CsaV3_7G007330 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G007330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 4578260 .. 4578829 (-)
RNA-Seq Expression	CsaV3_7G007330
Synteny	CsaV3_7G007330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAGAAATCATTGATACTTGTAGGTATATGGTTACTACATGGTTTATGGGTATGTCACTAACAACCACGAAACCAAATTCGTTTTCGACGCAACTCGCCAACATATATCGGACGAATGGACCTGAATTATTTCAAACTTCAACTCAGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGTGAACACATAAGTTCACAGCATCACCTAGCAACTTTAGAACCAATTCCTATCTCCATCTTCATGCATGGTGACGGAACTTTGGAGGGATTAATTTTTCAGGAGTTATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGATGATGAAGTGAATAGTACTTGTAGGGTGTTTGAAAAGATTTATATCCTCTTGAAATTGTGATGGAGTTGTTGGTTTTTGAGACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGATGTACTGGAGAGTATGTAA

mRNA sequence

ATGGCCGAAGAAATCATTGATACTTGTAGGTATATGGTTACTACATGGTTTATGGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGAGTTATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGATGATGAAACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGATGTACTGGAGAGTATGTAA

Coding sequence (CDS)

ATGGCCGAAGAAATCATTGATACTTGTAGGTATATGGTTACTACATGGTTTATGGATGTCAGCACTTCCAAACATGTGAAGAAGGCAATAGAAACACAACAACTTTACTTTGAGTTATGTACAGAGATGTACATCATCAACATCGAACTTGTGGTCGACGAAATAATAAATCATTGGGTTAGAAAAGTTGAAGAAGAAGAAGAAGAAGATGATGAAACAACTCGTGAGATAGATCATCAACCACAAGTAATGACAGCTCCAACAAGCGACAGTGACGATGTACTGGAGAGTATGTAA

Protein sequence

MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWVRKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM*

Homology

[Close]

BLAST of CsaV3_7G007330 vs. NCBI nr
Match: KGN43802.1 (hypothetical protein Csa_017284 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 7.3e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60
          MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV
Sbjct: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60

Query: 61 RKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM 99
          RKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM
Sbjct: 61 RKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM 98

[Close]

BLAST of CsaV3_7G007330 vs. ExPASy TrEMBL
Match: A0A0A0K679 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068060 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.6e-46
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60
          MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV
Sbjct: 1  MAEEIIDTCRYMVTTWFMDVSTSKHVKKAIETQQLYFELCTEMYIINIELVVDEIINHWV 60

Query: 61 RKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM 99
          RKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM
Sbjct: 61 RKVEEEEEEDDETTREIDHQPQVMTAPTSDSDDVLESM 98

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43802.1	7.3e-46	100.00	hypothetical protein Csa_017284 [Cucumis sativus]	[more]

BLAST of CsaV3_7G007330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K679	3.6e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G068060 PE=4 SV=1	[more]

BLAST of CsaV3_7G007330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007330.1	CsaV3_7G007330.1	mRNA