CsaV3_7G006990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G006990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	conserved peptide upstream open reading frame 45
Location	chr7: 4364457 .. 4367256 (-)
RNA-Seq Expression	CsaV3_7G006990
Synteny	CsaV3_7G006990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTGTGGATCAGTGACTGCTAAGCATGAGACAAAGGAAGATGAAAAGAAGGGTTATGTGAGTATCACATGGACACCAATTCCCAACCTTGAAGAACCTCATGTGCAAGAGGTTGTAAAGTTTGGAGTTGAAGAGTACAATAAGATATATAAAAAGCATTGGAAACTAAAGCAAGTTCAACAAGGTTGGTACTCATTGATCGACGGTACTCAAACTCAATATCGTTTCCTTTTAGAACAAGATCAAGTTCCTCCAGGTGATGAGAAAATTTATGAAGCTATTGTGTCAGTACAGGTATCATATCAGCCTCCTTATCAAGTAATCAACACTCTCTTACTTTTTATCCCATACTTCCACTAATTTAAATAAAGTACTCTACATCACTTATATGATGTGTGTACTGAAGTTTGATTATCTATGTTTATGTTATGTAGTTATGAATAAAAGGTATTTAAGTAATTGCTTTTTCTCGATCTTCATAAGCTTACAAGGAAGAGAAAAACGTATGGATTTCTTGTAGTGTCGTAATGCATTTGGTTAATTTGAAGATTTTGCTTCTAACAGTCTGAGGAAAGTTTTGAATAATTTTGGTTCCTATAACTTTTTAGAAGTTTACGAATCCATCAAACATAAACCTATAAATGATTTTAAACAATCTCTTTGTTCTTGTTTGAAGCTAAAGTTTTACTGTTTATTACTATTTCGAAATTAAAAGATACCAAAAACATTGAACAGATTTTAAGCTTTGGAATATATGAAATTAAAAGATACGAAAAACATTGAACAGATTTTAACCTTTGGAATATATTTAAATTTCATATATGTATAAGTTGGAAGGAAATTAGATTTTGAATGAACTTTAAAATTGATTGTTTTAGCTTTTGTTATGGCTAGGGTTTACTATTTTGACCGATCTCAAATTGACACGTTAATAAATTTGAGATTAAGTAGTTCACTCAGATTTATTAAAATAAACAAAAATATTTATAAATTATATCAAAATTTTGGATTTTATCCATTATAAAAACGGATAAATTTTTATCACGCTCTATCAATGCCACTTATAGAAACATATCAATATCTATCAATGCCGTCTATTATTAATAGAATTCAAAATTTTACTATATGTAAATATTTTTGTTAAAATTTGGTATTTTTTTACCATTCTCCAAATAAAAATTTATTTAAAATTAAATTAATTTAAGTCTAAATATAAAAGTTAGGGCTCAAAGTCAACCAAGACTAAACTCATCTGGTGTTGGTGCCTCAAATACTTCGGAGGTCACCCTTCGTTATATAAATTCAAACAGAGATCCAAAAATTAAAATTCACAAAATAATTATTTTCCGAATTAAATTTTCTTTGTCGAAATCTCGCGTGTATAGGTAGATTTTTCGAAATAAGTTAAGTAACAAAACTGTCACCTACATAATTGAGAGATATAGGACACCTAAAGGAAGAGACAAATGCTTGAGAGATGGTTTACCTAATGGGATCCGCACCCTAATCAATAGTCACACCCACGACCTTAGAAGATTGGTTAGGTTGGATCAACTAAGTTCACAGAAGACCTCTACACGACCCATGGAGGACTTTTGCAAGATCGTTTTAACCATACTATGAATGAATTAAGTTGTAACCTTTGTGCTTGTTTCAAGTTTAGCTTGAGAGTTTCTTGAATTTGCAATTCATGTGTTGAATTGCATGTCGGAATATTCAAAGTGAGATTGACAATCCTAACTTGTGAAGTGTTCGAATCTTGGACTCGAGAACTTGTTATTATCTCAATATATTTGATATTAAGACAATTCGTGTCTAACCCGAAAAAAGAATTTCTAATTTCAATCGATAATGATTTCGTATCATTTCAACCATTCCCTAATACTAAATAATAGTTACACAACAATAGTGAGTGAATCAATGTCTTTAACAATTAGTATAAGACAAAATATGATAACAATTGATATTAAATAGCAATTGGTATTTAACAACAATTATATAACAATTACTCTCAAATACCAATCACTATTATAACAATTACTCTCAAATACCAATCACTATCACTAATAATCAACATCTTTAACGATGAGATAACTACTGATCAGTATTTTAACAACTAGTATCAAATAATCATAAACAATCAAACAAACAATTATCTAACAATAATCCAACAAAAAATGGATATAAGAAATTTGTGGTTATGAACTGTGAGAGATATTTTGGTCATTCGAAAGTTGAGCTTTGCATAATCATAAAACGGTGTCGAGTTGAGCTTTGCATAATCATAAAACGGTGTCGAGAGTCTAATTTTAACACTTTAATTTGAGATTTGTACCCATTGGAATATCCTTTTTGACTCAAAACTGAAAACACTGCTCTGACACGAACCCTCTCATGGTGAAGGCCTAAATAAAGCAAAGCCCTTTTTTTTTTCACGACAACGCACGCTCAACGTACTCAAACCGCTCAATACCAATCTCGCAAATGGTTATGCGTATTAAATCTCCCAATTTCTCCTCGACCCTTCTCCCATCCAAAACAATCAAAACGAAAGGAAAATAAAGCCTTCACAAATCTCCTTATCTTCTTCCTCCGCTCCGGTCGGATCCATGGTGTTTCAGCCGTAATCAGCAATGCGTCATCGTTGATCCGATCTGGGTCGGTGATGAATCTCAAGAAAAAAGCCATGGAGTTTGAAAGAATTCGAGATTTGTTGCTCATTTGGTGCGGAATTCGAAGCCTCCGAGTGGCCCTCGTGGGTGGAAATCACACCGCTGCCAGGTTTTGCTCTCGCTAG

mRNA sequence

ATGAGTTGTGGATCAGTGACTGCTAAGCATGAGACAAAGGAAGATGAAAAGAAGGGTTATGTGAGTATCACATGGACACCAATTCCCAACCTTGAAGAACCTCATGTGCAAGAGGTTGTAAAGTTTGGAGTTGAAGAGTACAATAAGATATATAAAAAGCATTGGAAACTAAAGCAAGTTCAACAAGGTTGGTACTCATTGATCGACGGTACTCAAACTCAATATCGTTTCCTTTTAGAACAAGATCAAGTTCCTCCAGGTGATGAGAAAATTTATGAAGCTATTGTGTCAGTACAGGTATCATATCAGCCTCCTTATCAAGAAAATAAAGCCTTCACAAATCTCCTTATCTTCTTCCTCCGCTCCGGTCGGATCCATGGTGTTTCAGCCGTAATCAGCAATGCGTCATCGTTGATCCGATCTGGGTCGGTGATGAATCTCAAGAAAAAAGCCATGGAGTTTGAAAGAATTCGAGATTTGTTGCTCATTTGGTGCGGAATTCGAAGCCTCCGAGTGGCCCTCGTGGGTGGAAATCACACCGCTGCCAGGTTTTGCTCTCGCTAG

Coding sequence (CDS)

ATGAGTTGTGGATCAGTGACTGCTAAGCATGAGACAAAGGAAGATGAAAAGAAGGGTTATGTGAGTATCACATGGACACCAATTCCCAACCTTGAAGAACCTCATGTGCAAGAGGTTGTAAAGTTTGGAGTTGAAGAGTACAATAAGATATATAAAAAGCATTGGAAACTAAAGCAAGTTCAACAAGGTTGGTACTCATTGATCGACGGTACTCAAACTCAATATCGTTTCCTTTTAGAACAAGATCAAGTTCCTCCAGGTGATGAGAAAATTTATGAAGCTATTGTGTCAGTACAGGTATCATATCAGCCTCCTTATCAAGAAAATAAAGCCTTCACAAATCTCCTTATCTTCTTCCTCCGCTCCGGTCGGATCCATGGTGTTTCAGCCGTAATCAGCAATGCGTCATCGTTGATCCGATCTGGGTCGGTGATGAATCTCAAGAAAAAAGCCATGGAGTTTGAAAGAATTCGAGATTTGTTGCTCATTTGGTGCGGAATTCGAAGCCTCCGAGTGGCCCTCGTGGGTGGAAATCACACCGCTGCCAGGTTTTGCTCTCGCTAG

Protein sequence

MSCGSVTAKHETKEDEKKGYVSITWTPIPNLEEPHVQEVVKFGVEEYNKIYKKHWKLKQVQQGWYSLIDGTQTQYRFLLEQDQVPPGDEKIYEAIVSVQVSYQPPYQENKAFTNLLIFFLRSGRIHGVSAVISNASSLIRSGSVMNLKKKAMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR*

Homology

[Close]

BLAST of CsaV3_7G006990 vs. NCBI nr
Match: KAE8645820.1 (hypothetical protein Csa_017234 [Cucumis sativus])

HSP 1 Score: 379.8 bits (974), Expect = 1.4e-101
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSCGSVTAKHETKEDEKKGYVSITWTPIPNLEEPHVQEVVKFGVEEYNKIYKKHWKLKQV 60
           MSCGSVTAKHETKEDEKKGYVSITWTPIPNLEEPHVQEVVKFGVEEYNKIYKKHWKLKQV
Sbjct: 1   MSCGSVTAKHETKEDEKKGYVSITWTPIPNLEEPHVQEVVKFGVEEYNKIYKKHWKLKQV 60

Query: 61  QQGWYSLIDGTQTQYRFLLEQDQVPPGDEKIYEAIVSVQVSYQPPYQENKAFTNLLIFFL 120
           QQGWYSLIDGTQTQYRFLLEQDQVPPGDEKIYEAIVSVQVSYQPPYQENKAFTNLLIFFL
Sbjct: 61  QQGWYSLIDGTQTQYRFLLEQDQVPPGDEKIYEAIVSVQVSYQPPYQENKAFTNLLIFFL 120

Query: 121 RSGRIHGVSAVISNASSLIRSGSVMNLKKKAMEFERIRDLLLIWCGIRSLRVALVGGNHT 180
           RSGRIHGVSAVISNASSLIRSGSVMNLKKKAMEFERIRDLLLIWCGIRSLRVALVGGNHT
Sbjct: 121 RSGRIHGVSAVISNASSLIRSGSVMNLKKKAMEFERIRDLLLIWCGIRSLRVALVGGNHT 180

Query: 181 AARFCSR 188
           AARFCSR
Sbjct: 181 AARFCSR 187

[Close]

BLAST of CsaV3_7G006990 vs. NCBI nr
Match: KAG6571860.1 (hypothetical protein SDJN03_28588, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 121.3 bits (303), Expect = 8.8e-24
Identity = 60/107 (56.07%), Postives = 80/107 (74.77%), Query Frame = 0


Query: 1   MSCGSVTAKHETKE------DEKKGYVSITWTPIPNLEEPHVQEVVKFGVEEYNKIYKKH 60
           MS G+V    ++ +      D KKG+V ITWT I N+EE +VQE+ KF VEEYNK YKK 
Sbjct: 1   MSSGAVAHTGQSNDINHDMIDAKKGFVWITWTSIHNVEEANVQEIAKFAVEEYNKKYKKQ 60

Query: 61  WKLKQVQQGWYSLIDGTQTQYRFLLEQDQVPPGDEKIYEAIVSVQVS 102
           WK K++QQGWYS++   +TQYRFLLEQD V PGD+++Y+AIVS++V+
Sbjct: 61  WKCKRIQQGWYSVMK-DETQYRFLLEQDDVRPGDQQVYQAIVSLKVN 106

[Close]

BLAST of CsaV3_7G006990 vs. NCBI nr
Match: XP_016901668.1 (PREDICTED: uncharacterized protein LOC107991335 [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-14
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 145 MNLKKKAMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           MNLKK AMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR
Sbjct: 1   MNLKKIAMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 43

[Close]

BLAST of CsaV3_7G006990 vs. NCBI nr
Match: KRH21779.1 (hypothetical protein GLYMA_13G258400v4 [Glycine max])

HSP 1 Score: 65.1 bits (157), Expect = 7.5e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME ER+R L+L+WC IRS RVALVGGNHTAARFCSR
Sbjct: 1   MEVERVRQLMLMWCRIRSNRVALVGGNHTAARFCSR 36

[Close]

BLAST of CsaV3_7G006990 vs. NCBI nr
Match: KRH10590.1 (hypothetical protein GLYMA_15G057000v4 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-06
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME ER+R L+L+WC IRS RVALVGGNHTAARFCSR
Sbjct: 1   MEVERMRQLMLMWCRIRSNRVALVGGNHTAARFCSR 36

[Close]

BLAST of CsaV3_7G006990 vs. ExPASy TrEMBL
Match: A0A1S4E0B1 (uncharacterized protein LOC107991335 OS=Cucumis melo OX=3656 GN=LOC107991335 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 4.0e-14
Identity = 42/43 (97.67%), Postives = 42/43 (97.67%), Query Frame = 0


Query: 145 MNLKKKAMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           MNLKK AMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR
Sbjct: 1   MNLKKIAMEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 43

[Close]

BLAST of CsaV3_7G006990 vs. ExPASy TrEMBL
Match: K7M1X8 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G258400 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME ER+R L+L+WC IRS RVALVGGNHTAARFCSR
Sbjct: 1   MEVERVRQLMLMWCRIRSNRVALVGGNHTAARFCSR 36

[Close]

BLAST of CsaV3_7G006990 vs. ExPASy TrEMBL
Match: K7M9T9 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G057000 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.2e-07
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME ER+R L+L+WC IRS RVALVGGNHTAARFCSR
Sbjct: 1   MEVERMRQLMLMWCRIRSNRVALVGGNHTAARFCSR 36

[Close]

BLAST of CsaV3_7G006990 vs. ExPASy TrEMBL
Match: A0A1S3YRC9 (uncharacterized protein LOC107778954 OS=Nicotiana tabacum OX=4097 GN=LOC107778954 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME  RIR LLL+WC IRS RVALVGGNHTAARFC+R
Sbjct: 1   MEVARIRQLLLLWCRIRSSRVALVGGNHTAARFCTR 36

[Close]

BLAST of CsaV3_7G006990 vs. ExPASy TrEMBL
Match: A0A068TMD6 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00014729001 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-06
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME  RIR+LLL+WC  RS RVALVGGNHTAARFC+R
Sbjct: 1   MEIARIRELLLLWCRARSTRVALVGGNHTAARFCTR 36

[Close]

BLAST of CsaV3_7G006990 vs. TAIR 10
Match: AT1G58122.1 (conserved peptide upstream open reading frame 45 )

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-07
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 152 MEFERIRDLLLIWCGIRSLRVALVGGNHTAARFCSR 188
           ME +R+R L+ +W  ++S RV+L GGNHTAARFC+R
Sbjct: 1   MEIQRMRQLMSLWSNLKSSRVSLTGGNHTAARFCTR 36

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645820.1	1.4e-101	100.00	hypothetical protein Csa_017234 [Cucumis sativus]	[more]
KAG6571860.1	8.8e-24	56.07	hypothetical protein SDJN03_28588, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_016901668.1	8.2e-14	97.67	PREDICTED: uncharacterized protein LOC107991335 [Cucumis melo]	[more]
KRH21779.1	7.5e-07	80.56	hypothetical protein GLYMA_13G258400v4 [Glycine max]	[more]
KRH10590.1	1.3e-06	80.56	hypothetical protein GLYMA_15G057000v4 [Glycine max]	[more]

BLAST of CsaV3_7G006990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G006990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0B1	4.0e-14	97.67	uncharacterized protein LOC107991335 OS=Cucumis melo OX=3656 GN=LOC107991335 PE=...	[more]
K7M1X8	3.6e-07	80.56	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G258400 PE=4 SV=1	[more]
K7M9T9	6.2e-07	80.56	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_15G057000 PE=4 SV=1	[more]
A0A1S3YRC9	1.1e-06	80.56	uncharacterized protein LOC107778954 OS=Nicotiana tabacum OX=4097 GN=LOC10777895...	[more]
A0A068TMD6	1.4e-06	77.78	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00014729001 PE=4 ...	[more]

BLAST of CsaV3_7G006990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58122.1	2.7e-07	58.33	conserved peptide upstream open reading frame 45	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.10		coord: 24..116 e-value: 1.9E-9 score: 39.7
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 25..101
IPR000010	Cystatin domain	PFAM	PF16845	SQAPI	coord: 28..97 e-value: 2.6E-8 score: 34.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006990.1	CsaV3_7G006990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity