CsaV3_7G006950 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G006950
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 4356407 .. 4357344 (+)
RNA-Seq ExpressionCsaV3_7G006950
SyntenyCsaV3_7G006950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAGATTCCCTCTACAATAAAACCCAACCTCTAATTTAGATGGAAGTAATTCCTCCAAACTTTGCATGCATGAATTATACCCATGTAATGAGAACAAAAATCATAATCGAATCTCAATTTCGCTTTAATTACTTACATTGAATCATTATATGTGTTTTGATGATCTTTAATTGCATTTTTTGCATTGTTTAGTTGGTAATCCTTTAACTAATAAAACTTTTTGTGTACTTAAAAGATGGCCAACGCTATTCATCTATATAAAACCTCAAATAATCCAACTTCTAACTCAAACCCACATTACCATTCTTATTGTTAGTTCTATCAACAATGGCTCGTTTTACTCTTCTCATTGCGTTTGTTGCAACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTCCTCCTCCTCCATTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCAGGGCTCCCGGATTTCAACGTGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTTCATTTTTTGGCCCCAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCCACTAATCCTTCTCCTTGATCAGAAACTGAGTTTCATTCTCTAATAAACAGTACTCTCTCTTCTCTCTCTAGCTCTCTTTCTATGTGGGTTATTTGGTGGTATTGTTATGGATGAAAAATAATGAGACTTTTTGTTTAGTTTTTTCTTTTTTCGTCTAAGTTTTCATTGGAAGCTCAAGACGAAGAGTTGTCTCTTAATATGTAATCCTCAAAAACAGGGTGTGAAAGTGCACATTTGATTCCAAGCATTTGTGTGTTTGTCACTTTTTCCTGTTTATTTTGTGTGGAAATAATGATGTATTATTATATTATAATGCATGGAATAAGAATTTAGTATTGTTGTGTGTGCAAAACTATCCCTTTC

mRNA sequence

ATGGCTCGTTTTACTCTTCTCATTGCGTTTGTTGCAACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTCCTCCTCCTCCATTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCAGGGCTCCCGGATTTCAACGTGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTTCATTTTTTGGCCCCAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCCACTAATCCTTCTCCTTGA

Coding sequence (CDS)

ATGGCTCGTTTTACTCTTCTCATTGCGTTTGTTGCAACATTGCTTCTTTCAAGCTTGAGTTCTTCTTCCTCTTCCTCCTCCTCCATTATCGTATCTCGTAAGCTCTTGGCTTCGGATTTTCCAGGGCTCCCGGATTTCAACGTGCCACCATTTTACCCTGAATTCAAATTGCCTCCTCCATTTTCATTTTTTGGCCCCAATACTCCTTCTTCCATCTTTCCCAACTTCCCATTTTTCTCTCCACCCACTAATCCTTCTCCTTGA

Protein sequence

MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPPFSFFGPNTPSSIFPNFPFFSPPTNPSP*
Homology
[Close]
BLAST of CsaV3_7G006950 vs. NCBI nr
Match: KGN43761.1 (hypothetical protein Csa_017175 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60
          MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60

Query: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 88
          FSFFGPNTPSSIFPNFPFFSPPTNPSP
Sbjct: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 87

[Close]
BLAST of CsaV3_7G006950 vs. NCBI nr
Match: KAG6571864.1 (hypothetical protein SDJN03_28592, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.4 bits (241), Expect = 6.4e-17
Identity = 63/96 (65.62%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 1  MARFTLLIAFVATLLLSSLSS--SSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLP 60
          MAR  +LIA VATL LSS +S  SS SSSS++VSRKLLA +   +PD  VPP  P F LP
Sbjct: 1  MARLPILIACVATLFLSSFTSSCSSCSSSSLVVSRKLLALE---MPDMKVPPVSPGFSLP 60

Query: 61 PPFSFFGPNTPS-------SIFPNFPFFSPPTNPSP 88
          PPFSFFGPNTPS       S FPNFPFF PPTNPSP
Sbjct: 61 PPFSFFGPNTPSSSFPNIPSSFPNFPFFFPPTNPSP 93

[Close]
BLAST of CsaV3_7G006950 vs. ExPASy TrEMBL
Match: A0A0A0K7G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60
          MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP
Sbjct: 1  MARFTLLIAFVATLLLSSLSSSSSSSSSIIVSRKLLASDFPGLPDFNVPPFYPEFKLPPP 60

Query: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 88
          FSFFGPNTPSSIFPNFPFFSPPTNPSP
Sbjct: 61 FSFFGPNTPSSIFPNFPFFSPPTNPSP 87

The following BLAST results are available for this feature:
BLAST of CsaV3_7G006950 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN43761.12.1e-36100.00hypothetical protein Csa_017175 [Cucumis sativus][more]
KAG6571864.16.4e-1765.63hypothetical protein SDJN03_28592, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsaV3_7G006950 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G006950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7G81.0e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066190 PE=4 SV=1[more]
BLAST of CsaV3_7G006950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G006950.1CsaV3_7G006950.1mRNA