CsaV3_7G006610 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATACATCACCATTGTGGTTCATATCTTAGTCGAATCCTCATCACCTCAGTTCATTTCTATTCTACTTTTACAACTTCTCCTCCCACCATTCCCCTCATTTCCTTATTGAGACAATGCAAGACGTTGATCAATGCGAAGCTTGCTCACCAGCAAATTTTTGTCCATGGCTTCACCGAAATGTTCAGCTACGCCGTTGGTGCCTATATCGAGTGTGGTGCTTCTGCAGAAGCTGTATCACTCCTCCAACGTCTTATACCGTCACATTCCACCGTTTTCTGGTGGAATGCACTGATTCGACGCTCTGTGAAACTTGGTCTCCTTGATGATACATTGGGTTTTTATTGTCAGATGCAGAGGCTTGGGTGGTTGCCTGACCATTACACCTTTCCTTTTGTTCTCAAAGCCTGTGGTGAGATACCATCGTTACGGCATGGTGCTTCAGTTCATGCCATAGTTTGTGCAAATGGATTAGGGTCAAATGTATTTATTTGTAATTCAATTGTGGCTATGTACGGGCGATGTGGGGCATTGGATGATGCACACCAAATGTTCGATGAGGTGCTTGAAAGAAAGATTGAAGACATTGTGTCTTGGAATTCAATTCTTGCTGCTTATGTACAAGGTGGGCAGTCAAGAACTGCCCTTAGAATTGCTTTTCGAATGGGTAACCACTACAGTCTTAAACTTCGCCCGGATGCAATCACGCTTGTGAATATTCTTCCTGCTTGTGCGTCAGTATTTGCACTTCAACATGGTAAGCAGGTACATGGATTTTCAGTACGAAATGGATTGGTGGATGATGTATTTGTAGGCAATGCTCTCGTGAGTATGTATGCCAAATGCTCAAAGATGAATGAGGCGAACAAGGTCTTTGAGGGGATAAAGAAGAAGGATGTGGTTTCTTGGAATGCTATGGTCACCGGGTATTCTCAGATTGGTAGCTTTGATAGTGCCCTTTCCTTGTTTAAGATGATGCAAGAGGAAGATATCAAGTTAGATGTGATAACGTGGAGTGCTGTAATTGCTGGGTACGCTCAAAAGGGGCATGGTTTTGAAGCCCTTGATGTATTTAGACAAATGCAGCTTTATGGGTTGGAGCCCAATGTTGTTACTCTCGCGTCTCTTCTTTCAGGTTGTGCATCTGTGGGAGCATTGCTTTATGGGAAGCAAACACATGCGTATGTCATAAAAAATATTCTCAACTTGAATTGGAATGATAAAGAGGACGACTTGTTGGTTCTCAACGGTCTAATTGATATGTATGCTAAATGCAAAAGCTATAGAGTCGCTCGCAGCATTTTTGACTCGATAGAAGGAAAAGACAAGAATGTGGTGACTTGGACTGTGATGATTGGTGGATATGCTCAGCATGGGGAAGCCAATGATGCATTAAAACTGTTTGCTCAGATATTTAAACAGAAGACCTCTTTAAAGCCTAACGCCTTTACTCTATCATGTGCCTTGATGGCTTGTGCACGTTTGGGCGAGTTAAGGCTTGGAAGACAACTCCATGCCTATGCTTTGCGGAATGAAAATGAGTCTGAGGTTTTATATGTAGGCAATTGCCTCATTGACATGTATTCCAAATCGGGGGACATTGATGCTGCTCGAGCTGTGTTTGACAACATGAAATTACGAAATGTTGTTTCTTGGACTTCTTTGATGACGGGCTATGGTATGCATGGTCGTGGTGAAGAAGCTTTGCATCTTTTTGATCAAATGCAGAAACTGGGTTTTGCTGTTGATGGGATTACCTTTCTTGTCGTTTTATATGCTTGTAGTCACTCTGGAATGGTGGATCAAGGCATGATCTACTTCCACGATATGGTCAAGGGCTTTGGGATTACCCCTGGAGCCGAACATTATGCATGTATGGTCGATCTCTTGGGTCGTGCAGGTCGTCTTAACGAAGCAATGGAACTCATCAAAAACATGTCAATGGAGCCGACTGCAGTTGTATGGGTGGCATTATTAAGTGCCAGTAGAATCCATGCAAATATTGAGCTTGGGGAATATGCAGCAAGTAAATTGACAGAGTTAGGGGCAGAGAACGATGGTTCATACACATTACTTTCAAACTTGTATGCAAATGCACGACGTTGGAAAGACGTAGCAAGAATTAGGTCATTGATGAAGCATACCGGGATCAGAAAGAGGCCGGGATGTAGTTGGATACAAGGGAAGAAAAGCACTACAACTTTCTTTGTAGGTGATAGAAGTCATCCAGAATCAGAGCAAATATACAATCTTCTTTTGGATTTGATTAAACGAATAAAAGACATGGGGTACGTTCCTCAAACGAGCTTTGCTCTTCATGATGTTGATGATGAAGAGAAAGGTGATCTCCTGTTTGAGCATAGTGAAAAGTTGGCTGTTGCTTATGGGATTTTAACAACAGCCCCAGGACAGCCAATTCGGATACACAAGAATTTGCGCATCTGCGGTGATTGCCACAGTGCCTTAACCTACATTTCCATGATTATTGACCACGAGATCGTATTGAGAGACTCGAGTAGGTTCCATCATTTCAAGAAAGGCTCATGTTCTTGTAGAAGCTATTGGTGATGGAAAAATTCAGACGAAACTTTGAGGTTAGAATTTTATTTGATTTGTATTAGTTCATACCAGCACAATTCACATGTAGCATGACTTAAATGTAATCAAACATCAAAGTTTCTTCTCAAGTTCAATTCCCTACTACAAAATTGACATTACGTGATGCATGCAACTTTTAATTATTTAAATGTCAAGTAACATGTATCTTTTCCAGAAAAGGTCAAGAATAATAATAAAAAAGCGGAGTTTCACGGAATCTTTCATATATTTTCAAGCTTGCCTAAACTTGACATTTTAAAAAAGTCAAGTAATATCAAGTACACAAACTATATAATATTCTCTATTTTATTTTCCATTATCTCTCATTTTTGTTGAAAAACCCTACCTCCTTTGCGTGAAAGTAGCCACAACACACCCATCCCCCATCATCTTCTTCGATTTTCTCTTTCTCACATTAACTCTTTTTTTTGACCAACTCCTCTCAACGTTGAAAGCAGCCACAACTGCACGATTGTTGCTCTCTCATTCTCTCAACTCTCTCTAGCACTTCCTGCTTGAGTCATTGCTCCTAGGTCTGCGAGTCCACTTGGGGTTTTGAAAGATTTGATGTTCTCAGTCATCTGATGCGAATAGGTGACATGTAGGTTGGGTATTTATGTCTCCACTTAAGGTTTTCATTTTTCCTCTTTTGTTTTACTTTAATTCTAGAGAGAAAAGGGTAGTGTTGTGGGTCTCCTGATCGAGTGAAATTTGTTTTTGACATTGTATTATTTGTAGGTTTTTATAAATTCTACTCATGGGATGCGATAGGCTGTAGCTGTTTAATTTCACAGATGGGAAGCAGGGCAAAGTTTGGAAAGAAATTAATTCATCTATTGAATGTTTCTGTATTCAGTGACAGTTTAATTGTTGTAAATGTAATTCAATTGTGTTATTTTGTGATTTCTTCTCAAATTTGAATGACTAAATTAAATTTATCACCTCTTGCTTTTTTTTTTGATTTATTGATTATGGGTATTTATTTTGGTTTTAGGATCGGAGAGCGAGTAGTTCATTCACGAAGAGGGGTTCAATGATTTACATAAACATTAATTTATAAGAGCAGTTCGGTTATATAGGGATTTGATTCAAGACCTCTTTGAAAGTGAAAATAAAGAGGTTCGTAGCTTTAAAGCCAGATGTGACTTATGCTTCATTTTTTAGTACTATGTAATATGGATAAAGAAAATAACAATTTGTTTCAGAGTGTCCTCACAAACTGGACCAGAATGTGCTGCCCTTCCACCGTGGAACTCCTATGACCCATTTTCTTGGATTAGTTCTAAAGAGTTCCTAACAAATTCAGAGATGATTGCCAATCAGCTTAAATCTAAGGATATGAGGTAGGAAATTCTAACTGGCAGCCAAATTGTTTTTGTAACATTGGTCATTTTTATGATCTAATGGGTGGATTTTCAGCTTTATTGTAATGTAATGAAGGTAGTTGGTGTTTCTTGAGAAATTATTCAGTTAGGCCGCCATGATGTAGTTGGTAATTTTTCACTATTGAAAAGATTTTTGAATTTATATTTTGTAGTTATTAAGTGGCATACAAAGTTTTTGAACTTTCATTGTGCAGGACTCCCATGCACGAGTAGCAATAAATGCACTCATCGTCAGTCGTCTCCTTCTGCTCGTAGAACTCAAGGGTTGGCAACTGCATCTTTCCTTTGGCACCAACAACCCGAGGAGTGATGAGACTGGCTAG ATGATACATCACCATTGTGGTTCATATCTTAGTCGAATCCTCATCACCTCAGTTCATTTCTATTCTACTTTTACAACTTCTCCTCCCACCATTCCCCTCATTTCCTTATTGAGACAATGCAAGACGTTGATCAATGCGAAGCTTGCTCACCAGCAAATTTTTGTCCATGGCTTCACCGAAATGTTCAGCTACGCCGTTGGTGCCTATATCGAGTGTGGTGCTTCTGCAGAAGCTGTATCACTCCTCCAACGTCTTATACCGTCACATTCCACCGTTTTCTGGTGGAATGCACTGATTCGACGCTCTGTGAAACTTGGTCTCCTTGATGATACATTGGGTTTTTATTGTCAGATGCAGAGGCTTGGGTGGTTGCCTGACCATTACACCTTTCCTTTTGTTCTCAAAGCCTGTGGTGAGATACCATCGTTACGGCATGGTGCTTCAGTTCATGCCATAGTTTGTGCAAATGGATTAGGGTCAAATGTATTTATTTGTAATTCAATTGTGGCTATGTACGGGCGATGTGGGGCATTGGATGATGCACACCAAATGTTCGATGAGGTGCTTGAAAGAAAGATTGAAGACATTGTGTCTTGGAATTCAATTCTTGCTGCTTATGTACAAGGTGGGCAGTCAAGAACTGCCCTTAGAATTGCTTTTCGAATGGGTAACCACTACAGTCTTAAACTTCGCCCGGATGCAATCACGCTTGTGAATATTCTTCCTGCTTGTGCTGCCCTTTCCTTGTTTAAGATGATGCAAGAGGAAGATATCAAGTTAGATGTGATAACGTGGAGTGCTGTAATTGCTGGGTACGCTCAAAAGGGGCATGGTTTTGAAGCCCTTGATGTATTTAGACAAATGCAGCTTTATGGGTTGGAGCCCAATGTTGTTACTCTCGCGTCTCTTCTTTCAGGTTGTGCATCTGTGGGAGCATTGCTTTATGGGAAGCAAACACATGCGTATGTCATAAAAAATATTCTCAACTTGAATTGGAATGATAAAGAGGACGACTTGTTGGTTCTCAACGGTCTAATTGATATAGTGTCCTCACAAACTGGACCAGAATGTGCTGCCCTTCCACCGTGGAACTCCTATGACCCATTTTCTTGGATTAGTTCTAAAGAGTTCCTAACAAATTCAGAGATGATTGCCAATCAGCTTAAATCTAAGGATATGAGCTTTATTGACTCCCATGCACGAGTAGCAATAAATGCACTCATCGTCAGTCGTCTCCTTCTGCTCGTAGAACTCAAGGGTTGGCAACTGCATCTTTCCTTTGGCACCAACAACCCGAGGAGTGATGAGACTGGCTAG ATGATACATCACCATTGTGGTTCATATCTTAGTCGAATCCTCATCACCTCAGTTCATTTCTATTCTACTTTTACAACTTCTCCTCCCACCATTCCCCTCATTTCCTTATTGAGACAATGCAAGACGTTGATCAATGCGAAGCTTGCTCACCAGCAAATTTTTGTCCATGGCTTCACCGAAATGTTCAGCTACGCCGTTGGTGCCTATATCGAGTGTGGTGCTTCTGCAGAAGCTGTATCACTCCTCCAACGTCTTATACCGTCACATTCCACCGTTTTCTGGTGGAATGCACTGATTCGACGCTCTGTGAAACTTGGTCTCCTTGATGATACATTGGGTTTTTATTGTCAGATGCAGAGGCTTGGGTGGTTGCCTGACCATTACACCTTTCCTTTTGTTCTCAAAGCCTGTGGTGAGATACCATCGTTACGGCATGGTGCTTCAGTTCATGCCATAGTTTGTGCAAATGGATTAGGGTCAAATGTATTTATTTGTAATTCAATTGTGGCTATGTACGGGCGATGTGGGGCATTGGATGATGCACACCAAATGTTCGATGAGGTGCTTGAAAGAAAGATTGAAGACATTGTGTCTTGGAATTCAATTCTTGCTGCTTATGTACAAGGTGGGCAGTCAAGAACTGCCCTTAGAATTGCTTTTCGAATGGGTAACCACTACAGTCTTAAACTTCGCCCGGATGCAATCACGCTTGTGAATATTCTTCCTGCTTGTGCTGCCCTTTCCTTGTTTAAGATGATGCAAGAGGAAGATATCAAGTTAGATGTGATAACGTGGAGTGCTGTAATTGCTGGGTACGCTCAAAAGGGGCATGGTTTTGAAGCCCTTGATGTATTTAGACAAATGCAGCTTTATGGGTTGGAGCCCAATGTTGTTACTCTCGCGTCTCTTCTTTCAGGTTGTGCATCTGTGGGAGCATTGCTTTATGGGAAGCAAACACATGCGTATGTCATAAAAAATATTCTCAACTTGAATTGGAATGATAAAGAGGACGACTTGTTGGTTCTCAACGGTCTAATTGATATAGTGTCCTCACAAACTGGACCAGAATGTGCTGCCCTTCCACCGTGGAACTCCTATGACCCATTTTCTTGGATTAGTTCTAAAGAGTTCCTAACAAATTCAGAGATGATTGCCAATCAGCTTAAATCTAAGGATATGAGCTTTATTGACTCCCATGCACGAGTAGCAATAAATGCACTCATCGTCAGTCGTCTCCTTCTGCTCGTAGAACTCAAGGGTTGGCAACTGCATCTTTCCTTTGGCACCAACAACCCGAGGAGTGATGAGACTGGCTAG MIHHHCGSYLSRILITSVHFYSTFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACAALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDIVSSQTGPECAALPPWNSYDPFSWISSKEFLTNSEMIANQLKSKDMSFIDSHARVAINALIVSRLLLLVELKGWQLHLSFGTNNPRSDETG* Homology
BLAST of CsaV3_7G006610 vs. NCBI nr
Match: KGN43784.2 (hypothetical protein Csa_017356 [Cucumis sativus]) HSP 1 Score: 889.0 bits (2296), Expect = 1.6e-254 Identity = 438/438 (100.00%), Postives = 438/438 (100.00%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. NCBI nr
Match: XP_004137054.2 (pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658790.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658791.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658792.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658793.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658794.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658795.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658796.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658797.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658798.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658799.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_011658800.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744346.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744347.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744348.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744349.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744350.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744351.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744352.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus] >XP_031744353.1 pentatricopeptide repeat-containing protein At5g16860 [Cucumis sativus]) HSP 1 Score: 673.7 bits (1737), Expect = 1.1e-189 Identity = 347/421 (82.42%), Postives = 348/421 (82.66%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. NCBI nr
Match: KAA0031472.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06925.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 639.4 bits (1648), Expect = 2.2e-179 Identity = 329/421 (78.15%), Postives = 338/421 (80.29%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. NCBI nr
Match: KAA0031472.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK06925.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]) HSP 1 Score: 86.7 bits (213), Expect = 5.6e-13 Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 0
HSP 2 Score: 639.4 bits (1648), Expect = 2.2e-179 Identity = 329/421 (78.15%), Postives = 338/421 (80.29%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. NCBI nr
Match: XP_038889862.1 (pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889863.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889864.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889865.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889866.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889867.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889868.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889869.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889870.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889871.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889872.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889873.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889874.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida] >XP_038889875.1 pentatricopeptide repeat-containing protein At5g16860 [Benincasa hispida]) HSP 1 Score: 585.9 bits (1509), Expect = 2.9e-163 Identity = 301/421 (71.50%), Postives = 322/421 (76.48%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy Swiss-Prot
Match: Q9LFL5 (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H92 PE=2 SV=1) HSP 1 Score: 273.5 bits (698), Expect = 4.2e-72 Identity = 177/482 (36.72%), Postives = 244/482 (50.62%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 9.2e-35 Identity = 109/436 (25.00%), Postives = 206/436 (47.25%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy Swiss-Prot
Match: P0C899 (Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H77 PE=3 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.6e-34 Identity = 92/295 (31.19%), Postives = 153/295 (51.86%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy Swiss-Prot
Match: Q9LTV8 (Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H43 PE=2 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 2.3e-33 Identity = 99/366 (27.05%), Postives = 169/366 (46.17%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 5.1e-33 Identity = 108/432 (25.00%), Postives = 192/432 (44.44%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy TrEMBL
Match: A0A0A0K225 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G063940 PE=3 SV=1) HSP 1 Score: 673.7 bits (1737), Expect = 5.2e-190 Identity = 347/421 (82.42%), Postives = 348/421 (82.66%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy TrEMBL
Match: A0A1S3C0G3 (pentatricopeptide repeat-containing protein At5g16860 OS=Cucumis melo OX=3656 GN=LOC103495413 PE=3 SV=1) HSP 1 Score: 639.4 bits (1648), Expect = 1.1e-179 Identity = 329/421 (78.15%), Postives = 338/421 (80.29%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy TrEMBL
Match: A0A5A7SK77 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002350 PE=3 SV=1) HSP 1 Score: 639.4 bits (1648), Expect = 1.1e-179 Identity = 329/421 (78.15%), Postives = 338/421 (80.29%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy TrEMBL
Match: A0A5A7SK77 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G002350 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 2.7e-13 Identity = 56/107 (52.34%), Postives = 66/107 (61.68%), Query Frame = 0
HSP 2 Score: 557.8 bits (1436), Expect = 4.2e-155 Identity = 291/421 (69.12%), Postives = 316/421 (75.06%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. ExPASy TrEMBL
Match: A0A6J1CP62 (pentatricopeptide repeat-containing protein At5g16860 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013040 PE=3 SV=1) HSP 1 Score: 482.6 bits (1241), Expect = 1.7e-132 Identity = 248/361 (68.70%), Postives = 267/361 (73.96%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. TAIR 10
Match: AT5G16860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 273.5 bits (698), Expect = 3.0e-73 Identity = 177/482 (36.72%), Postives = 244/482 (50.62%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. TAIR 10
Match: AT3G22690.1 (CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 49784 Blast hits to 14716 proteins in 280 species: Archae - 2; Bacteria - 10; Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). ) HSP 1 Score: 149.4 bits (376), Expect = 6.6e-36 Identity = 109/436 (25.00%), Postives = 206/436 (47.25%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. TAIR 10
Match: AT3G22690.2 (INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). ) HSP 1 Score: 149.4 bits (376), Expect = 6.6e-36 Identity = 109/436 (25.00%), Postives = 206/436 (47.25%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. TAIR 10
Match: AT3G49142.1 (Tetratricopeptide repeat (TPR)-like superfamily protein ) HSP 1 Score: 148.7 bits (374), Expect = 1.1e-35 Identity = 92/295 (31.19%), Postives = 153/295 (51.86%), Query Frame = 0
BLAST of CsaV3_7G006610 vs. TAIR 10
Match: AT3G12770.1 (mitochondrial editing factor 22 ) HSP 1 Score: 144.8 bits (364), Expect = 1.6e-34 Identity = 99/366 (27.05%), Postives = 169/366 (46.17%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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