CsaV3_7G006360 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G006360
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 3947262 .. 3948178 (+)
RNA-Seq Expression	CsaV3_7G006360
Synteny	CsaV3_7G006360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTCGTACCACTTTCGTTTAATAAATTGTAGTTTCTTATAGCTTTTTCTTTAGGACGTATATCAACGTCCTGAATTTAGTTATTTTATAAGTATTATGATGAGTTTACTGTCATATCTTATTTTTATTTTCACTCTTGTTTTGAGTGGGCTCTTTTTACTGTTTTCGCATTACATATATTCTGTCTATTCCCCTTCTTTTTGTAGATTGTGAAATTGGAATCTATATATATATACACCATAAATAACATATTTATTGTTTTCTAATTACTAACATTCAATCGATAGTCACAAAAGAGCAAGTGCACATATAAGTATATATAATTTTCCAAACGCAGTATTATCATCTCCCATGATCAATTAAGCGTTCAAGTAAAGATGAATGCATTTTAGTTCCAAAAAATTCAACACAAAGTACAATTGTATTAAGTCACTCAGATTCTAAAACGTAACAATAATGTCTCTATTGAAAAGTAACAAGGGAAGAGTAAAGATAGAGAGATTGAGTAAGATTAATATTCATACCTTTAAAGGCTTGTGCGGGTTAGAGCTTGACCACCTAAAAGTGAAATGAAAGTTAAAAGAGAAGTGAAATCGTATTCGTCATTCGAGAGCACTGAATTACGTGTTGAAAGGATCGGGAGCAATCGCCGTCGCGTTGGAGCAGAAGATGGAGGAAGAGGGAAATTGGGAGGAGAAGCCGCGTGGGGACCCGTTCGTGCCAGAGCTCGCCATCAGTCGTCGTGGGTCACCATTGTGAGGTGTGGTGTTCAACTTCAGAGCGGTTCGTCTCGTGGCGTTCGTGGAGGGAGAGATGGAGAGATGGAGAGAGAAAAAGGAAAGTAAAGAAAATTTTGTTTTTTTCTTTCCTAATTTCTCATGAAAAAAATTTAAAGAAGGAAAGTAAAAATATTTG

mRNA sequence

ATGAAAGTTAAAAGAGAAGTGAAATCGTATTCGTCATTCGAGAGCACTGAATTACGTGTTGAAAGGATCGGGAGCAATCGCCGTCGCGTTGGAGCAGAAGATGGAGGAAGAGGGAAATTGGGAGGAGAAGCCGCGTGGGGACCCGTTCGTGCCAGAGCTCGCCATCAGTCGTCGTGGGTCACCATTGTGAGGTGTGGTGTTCAACTTCAGAGCGGTTCGTCTCGTGGCGTTCGTGGAGGGAGAGATGGAGAGATGGAGAGAGAAAAAGGAAAGTAA

Coding sequence (CDS)

ATGAAAGTTAAAAGAGAAGTGAAATCGTATTCGTCATTCGAGAGCACTGAATTACGTGTTGAAAGGATCGGGAGCAATCGCCGTCGCGTTGGAGCAGAAGATGGAGGAAGAGGGAAATTGGGAGGAGAAGCCGCGTGGGGACCCGTTCGTGCCAGAGCTCGCCATCAGTCGTCGTGGGTCACCATTGTGAGGTGTGGTGTTCAACTTCAGAGCGGTTCGTCTCGTGGCGTTCGTGGAGGGAGAGATGGAGAGATGGAGAGAGAAAAAGGAAAGTAA

Protein sequence

MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWVTIVRCGVQLQSGSSRGVRGGRDGEMEREKGK*

Homology

[Close]

BLAST of CsaV3_7G006360 vs. NCBI nr
Match: KGN43703.1 (hypothetical protein Csa_017121 [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 5.1e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60
          MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV
Sbjct: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60

Query: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 92
          TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK
Sbjct: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 91

[Close]

BLAST of CsaV3_7G006360 vs. ExPASy TrEMBL
Match: A0A0A0K2I6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061700 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.4e-41
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60
          MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV
Sbjct: 1  MKVKREVKSYSSFESTELRVERIGSNRRRVGAEDGGRGKLGGEAAWGPVRARARHQSSWV 60

Query: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 92
          TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK
Sbjct: 61 TIVRCGVQLQSGSSRGVRGGRDGEMEREKGK 91

The following BLAST results are available for this feature:

BLAST of CsaV3_7G006360 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43703.1	5.1e-41	100.00	hypothetical protein Csa_017121 [Cucumis sativus]	[more]

BLAST of CsaV3_7G006360 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G006360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2I6	2.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G061700 PE=4 SV=1	[more]

BLAST of CsaV3_7G006360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G006360.1	CsaV3_7G006360.1	mRNA