CsaV3_7G004410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G004410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	chr7: 3175877 .. 3176782 (-)
RNA-Seq Expression	CsaV3_7G004410
Synteny	CsaV3_7G004410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTGCTATATAAATCGGCCGTTTTTGCCCTTTCCTCCCAATTCTCCTTTTCCAACCAAAACAAAACACACACAAGGGAGGAAATTAAAAAGGGCCACCCACCACATTTCCATGAAGAAAACAGGCCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGGCCTCCCCCGGCCTCCTCAAAACCAACTTCTCCCGTCAGGTAATATTCTAAAAAATTCACTCAAACTCTCGTTAATTCTCAAAACAAAACTGAAGATCAATGATTCTTGGGTATTTCAGGAAAAAGTCACTAGAGATGAGGAAAGTACTACACCGGCGAGAAGATCGCCGCCGTCTACGGCAGCAGATCAATTTGCTCCGAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCGCATAGATGATAAGCTTTGGCAATCAAAATGGCCTTCCATCATTTTTCTTTTCTGTCTTATTGTAAAAAAAAAAAAAAAAAAAACAATTGCTTTGAGGAAAGAAACCCCAATTCTGTATTGCAAGTGGTGGGTTTGTTTTTGTTTTTTTTTTTAGAGGTTGATCTTGTAATTCAATCATATAAATGTAATGTAAGAATATAACGTGACATGTATTTTTACTATGTCAGTCATTCTGCAGTGCTCTGTTTTGGTAACGACAAATTGACAATACAACTTTGGCCTTTTCAACTTGATCGTTTTAAAGTGGATATTATTTCCATCTTTCATTCTCATCCCATCAAAAGGAAAAACACTACAAAAAGAAAAAAAGTTCAAATGTTAGTCCTGTCCCTTTATTAATTTTGTCATCCAAATTCCAATGAATGTTTAGGAATCAACCCTATTTTAAAAGTGGTGATACAATTAAATTTTTTAAGTTTTTGG

mRNA sequence

ATGAAGAAAACAGGCCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGGCCTCCCCCGGCCTCCTCAAAACCAACTTCTCCCGTCAGGAAAAAGTCACTAGAGATGAGGAAAGTACTACACCGGCGAGAAGATCGCCGCCGTCTACGGCAGCAGATCAATTTGCTCCGAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCGCATAGATGA

Coding sequence (CDS)

ATGAAGAAAACAGGCCTCTTCGCTGCCTCCGTCGCCGCTGCCTCCGCCACCGCCCTCTCTGCTCCCCCGGCCTCCCCCGGCCTCCTCAAAACCAACTTCTCCCGTCAGGAAAAAGTCACTAGAGATGAGGAAAGTACTACACCGGCGAGAAGATCGCCGCCGTCTACGGCAGCAGATCAATTTGCTCCGAGATTCGATGGGTTGAGATTCATTGAAACTCTTGTCACTGCGCATAGATGA

Protein sequence

MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQFAPRFDGLRFIETLVTAHR*

Homology

[Close]

BLAST of CsaV3_7G004410 vs. NCBI nr
Match: KGN43613.1 (hypothetical protein Csa_020428 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 7.5e-33
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of CsaV3_7G004410 vs. NCBI nr
Match: XP_038888462.1 (uncharacterized protein LOC120078298 [Benincasa hispida])

HSP 1 Score: 133.3 bits (334), Expect = 9.5e-28
Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAPP+S G+LKT FS QE+VTRD+E TTP+RRSPPSTAA+Q
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSAGILKTTFSHQEQVTRDQEITTPSRRSPPSTAAEQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of CsaV3_7G004410 vs. NCBI nr
Match: KAA0031576.1 (hypothetical protein E6C27_scaffold139G003430 [Cucumis melo var. makuwa] >TYK07028.1 hypothetical protein E5676_scaffold13G003450 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 3.6e-27
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKV-TRDEESTTPARRSPPSTAAD 60
          MKKTGLFAASVAAASATALSAPP+SP  LKTNFS QEKV  RDEE TTP RRSPPSTA+D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CsaV3_7G004410 vs. NCBI nr
Match: XP_023554654.1 (uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 121.3 bits (303), Expect = 3.7e-24
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP +S G+LKT FS QEKV   +E T+P+R SPPSTAADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSTGVLKTTFSHQEKVISRDEETSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CsaV3_7G004410 vs. NCBI nr
Match: XP_022952670.1 (uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothetical protein SDJN03_29089, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011972.1 hypothetical protein SDJN02_26880 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.4e-23
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP +S G+LKT FS QEKV   +E T+P+R SPPSTA DQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CsaV3_7G004410 vs. ExPASy TrEMBL
Match: A0A0A0K2C1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.6e-33
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ
Sbjct: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 79

[Close]

BLAST of CsaV3_7G004410 vs. ExPASy TrEMBL
Match: A0A5D3C7A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003450 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 71/80 (88.75%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKV-TRDEESTTPARRSPPSTAAD 60
          MKKTGLFAASVAAASATALSAPP+SP  LKTNFS QEKV  RDEE TTP RRSPPSTA+D
Sbjct: 1  MKKTGLFAASVAAASATALSAPPSSPSTLKTNFSHQEKVIARDEEITTPTRRSPPSTASD 60

Query: 61 QFAPRFDGLRFIETLVTAHR 80
          QFAPRFDGLRFIETLVTAHR
Sbjct: 61 QFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CsaV3_7G004410 vs. ExPASy TrEMBL
Match: A0A6J1GMF4 (uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC111455296 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.9e-24
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP +S G+LKT FS QEKV   +E T+P+R SPPSTA DQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVISRDEETSPSRISPPSTAPDQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CsaV3_7G004410 vs. ExPASy TrEMBL
Match: A0A6J1I0M0 (uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 9.0e-24
Identity = 64/79 (81.01%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLLKTNFSRQEKVTRDEESTTPARRSPPSTAADQ 60
          MKKTGLFAASVAAASATALSAP +S G+LKT FS QEKV   +E ++P+R SPPSTAADQ
Sbjct: 3  MKKTGLFAASVAAASATALSAPSSSAGVLKTTFSHQEKVIIRDEESSPSRISPPSTAADQ 62

Query: 61 FAPRFDGLRFIETLVTAHR 80
          FAPRFDGLRFIETLVTAHR
Sbjct: 63 FAPRFDGLRFIETLVTAHR 81

[Close]

BLAST of CsaV3_7G004410 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSAPPASPGLL--KTNFSRQEKVTRDEESTTPARRSPPSTAA 60
          MKK+G FAASVAAASATA+SAP +S  L   K   SR E V   +   + ++R   S++A
Sbjct: 1  MKKSGFFAASVAAASATAISAPSSSGFLCNSKIQLSRDEAVAGKDIENSESQR---SSSA 60

Query: 61 DQFAPRFDGLRFIETLVTAHR 80
          D+FAPRFDGLRFIETLVTAHR
Sbjct: 61 DRFAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of CsaV3_7G004410 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 4.3e-10
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MKKTGLFAASVA-AASATALSAPPASPGLL----KTNFSRQEKVTRDEESTTPARRSPPS 60
          MKKTG+ AAS++ AASATA+SA   +  +     ++N SRQE     +E     + S   
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEA----KEKQRKKKGSSED 60

Query: 61 TAADQFAPRFDGLRFIETLVTAHR 80
             ++FAPRFDGLRFIETLVTAHR
Sbjct: 61 GGDEKFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of CsaV3_7G004410 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 2.4e-05
Identity = 34/83 (40.96%), Postives = 40/83 (48.19%), Query Frame = 0


Query: 1  MKKTGLFAASVAAASATALSA----PPASPGLLKTNFSRQEKVTRDEESTTPARRSPPST 60
          MK +    ASV A S  ALS+    PP SP + +                     S  + 
Sbjct: 1  MKVSSGVVASVIAVSTAALSSSSILPPVSPKVWE---------------------SRKTN 60

Query: 61 AADQFAPRFDGLRFIETLVTAHR 80
           +D F PRFDGLRFIETLVTAHR
Sbjct: 61 GSDNFEPRFDGLRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of CsaV3_7G004410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43613.1	7.5e-33	100.00	hypothetical protein Csa_020428 [Cucumis sativus]	[more]
XP_038888462.1	9.5e-28	87.34	uncharacterized protein LOC120078298 [Benincasa hispida]	[more]
KAA0031576.1	3.6e-27	88.75	hypothetical protein E6C27_scaffold139G003430 [Cucumis melo var. makuwa] >TYK070...	[more]
XP_023554654.1	3.7e-24	82.28	uncharacterized protein LOC111811842 [Cucurbita pepo subsp. pepo]	[more]
XP_022952670.1	1.4e-23	81.01	uncharacterized protein LOC111455296 [Cucurbita moschata] >KAG6572361.1 hypothet...	[more]

BLAST of CsaV3_7G004410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G004410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K2C1	3.6e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G047970 PE=4 SV=1	[more]
A0A5D3C7A0	1.7e-27	88.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1GMF4	6.9e-24	81.01	uncharacterized protein LOC111455296 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1I0M0	9.0e-24	81.01	uncharacterized protein LOC111468357 OS=Cucurbita maxima OX=3661 GN=LOC111468357...	[more]
E0CTD2	1.3e-11	60.49	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]

BLAST of CsaV3_7G004410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	4.3e-10	50.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	2.4e-05	40.96	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..62
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..79
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G004410.1	CsaV3_7G004410.1	mRNA