CsaV3_7G002930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G002930
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 2217400 .. 2217811 (-)
RNA-Seq ExpressionCsaV3_7G002930
SyntenyCsaV3_7G002930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCGTTCTTGTCCTGTCCCCAAAAGTGGCAGCAAGAGACCTTTTAAGTGACGGCCGCGGCAGCTCCGCGGACACCCCTGGCTGCGGAAATTACTATAGATGCGGTGGGTACGGTAGAGGTGGAGGTGGAAATGGTTGCTCACATGGTTGCTGTGGTTTCAATCGTGATGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTTACCAATGTAAACCCCTAAGAAAATATATAGTTAGGATAGCGAGTTCGAAGAAGTGGAACCATTTATTTAACTAAAGAAGTTTGAAAATCTCATGCTAAAGGAAAACATCAAATTTTCACGAACGATTACACAATCCTTCTGACTAAATATAACTTCACACCTCTTTGAATAAAAATTTTAAGACTTTTTTGTATCTTCATTTTCAT

mRNA sequence

GTTCTTGTCCTGTCCCCAAAAGTGGCAGCAAGAGACCTTTTAAGTGACGGCCGCGGCAGCTCCGCGGACACCCCTGGCTGCGGAAATTACTATAGATGCGGTGGGTACGGTAGAGGTGGAGGTGGAAATGGTTGCTCACATGGTTGCTGTGGTTTCAATCGTGATGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTTACCAATGTAAACCCCTAA

Coding sequence (CDS)

GTTCTTGTCCTGTCCCCAAAAGTGGCAGCAAGAGACCTTTTAAGTGACGGCCGCGGCAGCTCCGCGGACACCCCTGGCTGCGGAAATTACTATAGATGCGGTGGGTACGGTAGAGGTGGAGGTGGAAATGGTTGCTCACATGGTTGCTGTGGTTTCAATCGTGATGGTCGATGCATCCAATGTTGCAACTATGCTAATGAAGTTACCAATGTAAACCCCTAA

Protein sequence

VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQCCNYANEVTNVNP*
Homology
[Close]
BLAST of CsaV3_7G002930 vs. NCBI nr
Match: KAE8645724.1 (hypothetical protein Csa_020254, partial [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.3e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 60
          VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ
Sbjct: 1  VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 60

Query: 61 CCNYANEVTNVNP 74
          CCNYANEVTNVNP
Sbjct: 61 CCNYANEVTNVNP 73

[Close]
BLAST of CsaV3_7G002930 vs. NCBI nr
Match: KAA0059145.1 (hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK02545.1 hypothetical protein E5676_scaffold201G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 65/73 (89.04%), Postives = 66/73 (90.41%), Query Frame = 0 

Query: 1  VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 60
          VLVLS KVA RDLL DG GSSADTPGCGNY RCGGYGRGGGG+GCSHGCCGFNR GRCIQ
Sbjct: 22 VLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRGGGGDGCSHGCCGFNRGGRCIQ 81

Query: 61 CCNYANEVTNVNP 74
          CCNYANEVTNV P
Sbjct: 82 CCNYANEVTNVKP 94

[Close]
BLAST of CsaV3_7G002930 vs. ExPASy TrEMBL
Match: A0A0A0K6K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.6e-35
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 60
          VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ
Sbjct: 22 VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 81

Query: 61 CCNYANEVTNVNP 74
          CCNYANEVTNVNP
Sbjct: 82 CCNYANEVTNVNP 94

[Close]
BLAST of CsaV3_7G002930 vs. ExPASy TrEMBL
Match: A0A5D3BTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00260 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.8e-30
Identity = 65/73 (89.04%), Postives = 66/73 (90.41%), Query Frame = 0 

Query: 1  VLVLSPKVAARDLLSDGRGSSADTPGCGNYYRCGGYGRGGGGNGCSHGCCGFNRDGRCIQ 60
          VLVLS KVA RDLL DG GSSADTPGCGNY RCGGYGRGGGG+GCSHGCCGFNR GRCIQ
Sbjct: 22 VLVLSSKVATRDLLHDGHGSSADTPGCGNYNRCGGYGRGGGGDGCSHGCCGFNRGGRCIQ 81

Query: 61 CCNYANEVTNVNP 74
          CCNYANEVTNV P
Sbjct: 82 CCNYANEVTNVKP 94

[Close]
BLAST of CsaV3_7G002930 vs. ExPASy TrEMBL
Match: A0A6P5TT15 (glycine-rich protein-like OS=Prunus avium OX=42229 GN=LOC110770230 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-04
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0 

Query: 17  GRGSSADTPGCGNY---YRCGGYGRGGGGNGCSHGCCGFNRDGR-CIQCCNYANEVTNVN 74
           GRG     PG G Y      GGYG GGGG  C +GCC  + +GR C++CCN+ANE  +  
Sbjct: 50  GRGGYGGNPGHGGYGGNPGRGGYGGGGGGGRCYYGCCRRSYNGRECVRCCNHANEAVDAQ 109

[Close]
BLAST of CsaV3_7G002930 vs. ExPASy TrEMBL
Match: A0A6P5TST7 (glycine-rich protein-like OS=Prunus avium OX=42229 GN=LOC110770232 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.6e-04
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 0 

Query: 17  GRGSSADTPGCGNY---YRCGGYGRGGGGNGCSHGCCGFNRDGR-CIQCCNYANEVTNVN 74
           GRG     PG G Y      GGYG GGGG  C +GCC  + +GR C++CCN+ANE  +  
Sbjct: 50  GRGGYGGNPGHGGYGGNPGRGGYGGGGGGGRCYYGCCRRSYNGRECVRCCNHANEAVDAQ 109

The following BLAST results are available for this feature:
BLAST of CsaV3_7G002930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645724.13.3e-35100.00hypothetical protein Csa_020254, partial [Cucumis sativus][more]
KAA0059145.11.6e-2989.04hypothetical protein E6C27_scaffold430G00610 [Cucumis melo var. makuwa] >TYK0254... [more]
BLAST of CsaV3_7G002930 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G002930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K6K91.6e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037550 PE=4 SV=1[more]
A0A5D3BTN87.8e-3089.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6P5TT159.6e-0447.54glycine-rich protein-like OS=Prunus avium OX=42229 GN=LOC110770230 PE=4 SV=1[more]
A0A6P5TST79.6e-0447.54glycine-rich protein-like OS=Prunus avium OX=42229 GN=LOC110770232 PE=4 SV=1[more]
BLAST of CsaV3_7G002930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002930.1CsaV3_7G002930.1mRNA