CsaV3_7G002640 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G002640
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 2045095 .. 2045615 (-)
RNA-Seq Expression	CsaV3_7G002640
Synteny	CsaV3_7G002640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAACATTGTATTCATCAACGTCTTAATTGGGTATTCAAAAATCACAACCCTGCTCCATTCTTCAATTTCTTGTTCCATTCAATCGAATTCTGATGCTATCCCCTACGCTTTCACATTCCCTCCAACCATTTCTCCCTCCCAACCTTCATTTTCCTCTTCAAAACTGCGGGACCGAACGAGAAGCAAACCAACTCCACGCTCTCTCGATCAAAACAGCCTCCTTGAATCACCCTTCAGTGTCTTCTCGTCTTTTGGCTCTTTATGCAGATCCCAGAATCAACAATCTTCAATATGCTCACTCCCTTTTCGACTGGATTCAAGAACCCACTTTGGTTTCTTGGAATTTACTCATCAAGTGCTACATCGAGAACCAACGTTCAAATGATGCCATTGCGTTGTTCTGCAAATTGCTTTGTGATTTCGTGCCTGATTCTTTTACATTGCCTTGTGTTCTAAAGGGTTGTGCTCGATTGGGTGCATTACAGGAAGGGAAACAGATTCATGGCTTGGTATTGA

mRNA sequence

ATGTATAACATTGTATTCATCAACGTCTTAATTGGGTATTCAAAAATCACAACCCTGCTCCATTCTTCAATTTCTTGTTCCATTCAATCGAATTCTGATGCTATCCCCTACGCTTTCACATTCCCTCCAACCATTTCTCCCTCCCAACCTTCATTTTCCTCTTCAAAACTGCGGGACCGAACGAGAAGCAAACCAACTCCACGCTCTCTCGATCAAAACAGCCTCCTTGAATCACCCTTCAGTGTCTTCTCGTCTTTTGGCTCTTTATGCAGATCCCAGAATCAACAATCTTCAATATGCTCACTCCCTTTTCGACTGGATTCAAGAACCCACTTTGGTTTCTTGGAATTTACTCATCAAGTGCTACATCGAGAACCAACGGTTGTGCTCGATTGGGTGCATTACAGGAAGGGAAACAGATTCATGGCTTGGTATTGA

Coding sequence (CDS)

ATGTATAACATTGTATTCATCAACGTCTTAATTGGGTATTCAAAAATCACAACCCTGCTCCATTCTTCAATTTCTTGTTCCATTCAATCGAATTCTGATGCTATCCCCTACGCTTTCACATTCCCTCCAACCATTTCTCCCTCCCAACCTTCATTTTCCTCTTCAAAACTGCGGGACCGAACGAGAAGCAAACCAACTCCACGCTCTCTCGATCAAAACAGCCTCCTTGAATCACCCTTCAGTGTCTTCTCGTCTTTTGGCTCTTTATGCAGATCCCAGAATCAACAATCTTCAATATGCTCACTCCCTTTTCGACTGGATTCAAGAACCCACTTTGGTTTCTTGGAATTTACTCATCAAGTGCTACATCGAGAACCAACGGTTGTGCTCGATTGGGTGCATTACAGGAAGGGAAACAGATTCATGGCTTGGTATTGA

Protein sequence

MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDRTRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQVLHREPTVVLDWVHYRKGNRFMAWY*

Homology

[Close]

BLAST of CsaV3_7G002640 vs. NCBI nr
Match: KGN43424.1 (hypothetical protein Csa_020260 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 5.0e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60
           MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR
Sbjct: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60

Query: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120
           TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ
Sbjct: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120

Query: 121 VLHREPTVVLDWVHYRKGNRFMAWY 146
           VLHREPTVVLDWVHYRKGNRFMAWY
Sbjct: 121 VLHREPTVVLDWVHYRKGNRFMAWY 145

[Close]

BLAST of CsaV3_7G002640 vs. ExPASy TrEMBL
Match: A0A0A0K363 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033320 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.4e-75
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60
           MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR
Sbjct: 1   MYNIVFINVLIGYSKITTLLHSSISCSIQSNSDAIPYAFTFPPTISPSQPSFSSSKLRDR 60

Query: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120
           TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ
Sbjct: 61  TRSKPTPRSLDQNSLLESPFSVFSSFGSLCRSQNQQSSICSLPFRLDSRTHFGFLEFTHQ 120

Query: 121 VLHREPTVVLDWVHYRKGNRFMAWY 146
           VLHREPTVVLDWVHYRKGNRFMAWY
Sbjct: 121 VLHREPTVVLDWVHYRKGNRFMAWY 145

The following BLAST results are available for this feature:

BLAST of CsaV3_7G002640 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN43424.1	5.0e-75	100.00	hypothetical protein Csa_020260 [Cucumis sativus]	[more]

BLAST of CsaV3_7G002640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G002640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K363	2.4e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G033320 PE=4 SV=1	[more]

BLAST of CsaV3_7G002640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G002640.1	CsaV3_7G002640.1	mRNA