CsaV3_7G001950 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTTCTTACCTATAAATCAAACTTTCTACTTCACCTCCACACAATCAAAAACCAATTCTTCAATTAACAATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAAGCTTTATCCAACAAATCATCTCTGTTTCTCCCCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTTCTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTGTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGGTGGCGAGGGGAGAGAGGTTGAGATCGGAAGAAAAGATGGAGGAATTGGGAGATTGCAGCATCTGTTTGGATGAATTGAGTTGTGAAAAGAGGGAGGTGATGAGGATTCCTTGTGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTGAGAATCACAATTCTTGTCCTTTGTGTAGAAAGCCATTGCACCACGACGACGAGGACGACGAGGAGTACTCATGGTGATAATTCATCCATTCTTTTTTGTGAAGTTTTTCGTAATTGGGATTCTAATTCTATCAACTACTCTTTCTTCCCAAAGGGAAGAAAAGAAAATTCTTCAATCCTCTGTATTTTTTTACTACATCTGGTAGTAATGATCACAACTTTAGCAATGTTAATAGTAATACTATGCACAGATTCAAATCTTGTTATATTCTC ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAAGCTTTATCCAACAAATCATCTCTGTTTCTCCCCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTTCTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTGTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGGTGGCGAGGGGAGAGAGGTTGAGATCGGAAGAAAAGATGGAGGAATTGGGAGATTGCAGCATCTGTTTGGATGAATTGAGTTGTGAAAAGAGGGAGGTGATGAGGATTCCTTGTGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTGAGAATCACAATTCTTGTCCTTTGTGTAGAAAGCCATTGCACCACGACGACGAGGACGACGAGGAGTACTCATGGTGA ATGTCTTTTGCTATTTCTAATCCCATTCAGTACCGTCTCTACGCCTCCGGCACCGGAGGCAATGGAGTATTACAAGTTAATATAAGCTTTATCCAACAAATCATCTCTGTTTCTCCCCTCACCGGACGTCCCCATGAAGTCCTCCATCAAACTCCAAGGATTCCGTACCACAATGCTCTCTTTTATCTCTCCTTACGCCAACTCCAAAGTCCGTTGTTCTACATCACTCAAATTCTCTCCTCACTCAACATCCGCCCTGCCGCTTCCCAAAACATGGCTCGTCGTATCGCTTCCCACATCCTACAAATGCCTGACAGAAACAGCGAGACGAATTTCCATATCCTCGCTGAAGTGGATTTCATTCGACTGATTTGGCTGCCATCAATGGGTGGAGGCGGTGCAGGGGCGGAGGAAACAGTTGTGTTGGATGAAGCTCCGCCGGCAGTGAAGAGGGGAGTGGGGGTGGCGAGGGGAGAGAGGTTGAGATCGGAAGAAAAGATGGAGGAATTGGGAGATTGCAGCATCTGTTTGGATGAATTGAGTTGTGAAAAGAGGGAGGTGATGAGGATTCCTTGTGGCCATGTTTACCATGAATCGTGCATCTTCAAGTGGCTTGAGAATCACAATTCTTGTCCTTTGTGTAGAAAGCCATTGCACCACGACGACGAGGACGACGAGGAGTACTCATGGTGA MSFAISNPIQYRLYASGTGGNGVLQVNISFIQQIISVSPLTGRPHEVLHQTPRIPYHNALFYLSLRQLQSPLFYITQILSSLNIRPAASQNMARRIASHILQMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERLRSEEKMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRKPLHHDDEDDEEYSW* Homology
BLAST of CsaV3_7G001950 vs. NCBI nr
Match: XP_004144954.1 (uncharacterized protein LOC101214496 [Cucumis sativus] >KGN43349.1 hypothetical protein Csa_020356 [Cucumis sativus]) HSP 1 Score: 475.3 bits (1222), Expect = 2.9e-130 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. NCBI nr
Match: XP_011659694.1 (E3 ubiquitin-protein ligase RDUF1 [Cucumis sativus] >KGN43356.1 hypothetical protein Csa_020163 [Cucumis sativus]) HSP 1 Score: 472.6 bits (1215), Expect = 1.9e-129 Identity = 228/230 (99.13%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. NCBI nr
Match: XP_016899530.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis melo] >KAA0035774.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29842.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103 Identity = 186/227 (81.94%), Postives = 208/227 (91.63%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. NCBI nr
Match: XP_038883574.1 (E3 ubiquitin-protein ligase RNF181-like [Benincasa hispida]) HSP 1 Score: 299.7 bits (766), Expect = 2.2e-77 Identity = 150/226 (66.37%), Postives = 182/226 (80.53%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. NCBI nr
Match: XP_016901482.1 (PREDICTED: uncharacterized protein LOC107991269 [Cucumis melo] >KAA0044413.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa] >TYK29540.1 E3 ubiquitin-protein ligase RNF181-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 223.4 bits (568), Expect = 2.0e-54 Identity = 125/223 (56.05%), Postives = 163/223 (73.09%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 73.9 bits (180), Expect = 2.6e-12 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.2e-11 Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy Swiss-Prot
Match: Q9VHI7 (E3 ubiquitin-protein ligase Iruka OS=Drosophila melanogaster OX=7227 GN=Iru PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10 Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy Swiss-Prot
Match: Q9Y7K6 (Uncharacterized RING finger protein C2A9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC2A9.04c PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 3.2e-10 Identity = 33/90 (36.67%), Postives = 55/90 (61.11%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy Swiss-Prot
Match: Q94AK4 (E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 7.1e-10 Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy TrEMBL
Match: A0A0A0K2W2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G025210 PE=4 SV=1) HSP 1 Score: 475.3 bits (1222), Expect = 1.4e-130 Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy TrEMBL
Match: A0A0A0K696 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G026750 PE=4 SV=1) HSP 1 Score: 472.6 bits (1215), Expect = 9.2e-130 Identity = 228/230 (99.13%), Postives = 230/230 (100.00%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy TrEMBL
Match: A0A5D3E1S5 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G00800 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 8.7e-104 Identity = 186/227 (81.94%), Postives = 208/227 (91.63%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy TrEMBL
Match: A0A1S4DUZ4 (E3 ubiquitin-protein ligase RNF181-like OS=Cucumis melo OX=3656 GN=LOC107990564 PE=4 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 8.7e-104 Identity = 186/227 (81.94%), Postives = 208/227 (91.63%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. ExPASy TrEMBL
Match: A0A5A7TLM1 (E3 ubiquitin-protein ligase RNF181-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001430 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 9.8e-55 Identity = 125/223 (56.05%), Postives = 163/223 (73.09%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. TAIR 10
Match: AT5G37200.1 (RING/U-box superfamily protein ) HSP 1 Score: 75.9 bits (185), Expect = 4.8e-14 Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 73.9 bits (180), Expect = 1.8e-13 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. TAIR 10
Match: AT1G57730.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.0e-11 Identity = 26/57 (45.61%), Postives = 38/57 (66.67%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.0e-11 Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 0
BLAST of CsaV3_7G001950 vs. TAIR 10
Match: AT3G56580.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 5.0e-11 Identity = 28/73 (38.36%), Postives = 37/73 (50.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|