CsaV3_7G000970 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G000970
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 899573 .. 900421 (+)
RNA-Seq ExpressionCsaV3_7G000970
SyntenyCsaV3_7G000970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTAACAAAGTTTTGTCAATGGGGGTATTAAGACAACTCATTATATCAGTAGAGTTATTTGTTGTACCGTACGCGGACGTATACCTTCCAAACTAAGTTTTGTTAATGTAGTTTCTCCCCCTAATTCCTTTTATATAAATGGAACCCTTTGTGGCTTTTACAAAATCGTCAAACGAAAAATCTTTAACACAAAGCCTTCTTCATCATATAACTTCTCTCGGCCCAGTACACACAACTTTTCCATCGCTCTATCTTGTTTAGAACTGCAGTACTACTAAACAAGAGAGAGTGAGTGTGAGTGTGAGTGTTTGTGTGAGTGTGAGTGTCTGCAGATTGATTTTGATTTTTGTCTTTGTTCCTATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTCATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTAAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAGAAGAAAAATTGAAGAAGCCCCTCTAGCCAACAAATGAAACTTCTACTTGAAGAGAAGAGAAGAGGGATGATTTGTATTTGTAATTCTTTTTTAACATTTTTTTTAAAAGGGATATACATTTGTGTAATATCACTTTTAACTTTTAATAAATGAAATTATTGAAT

mRNA sequence

ATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTCATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTAAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAG

Coding sequence (CDS)

ATGAATTGCTTCCTTGCCAAGTGTGGGACATTAAACCAAGTGCTAAGAATTCGAGAAGATGGTCATAACAGAAAGGAAAGAAAAATAGAAAGAGATGATGATATTGTCATTGGCGAGGCACCAAAAACGATGAAGATCAGCAGGAAGGGGCATCGACGAGTAAGAAGTAAGGAGAGAAAGATGATGCCGTCGTCGTCGAGGTTGCAACGATCACAGATAGAGAGAGTTGAGTTGGGTGGATGGCTTGCAGCATGGTTGGAAGAGGCCGAAGGAGAAAGAGAGAAGGATGAAGTTAAGGAGTTGGAGAAGGAAATCAAAAGGTAG

Protein sequence

MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERKMMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR*
Homology
BLAST of CsaV3_7G000970 vs. NCBI nr
Match: KGN43248.1 (hypothetical protein Csa_020351 [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 7.0e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
           MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

BLAST of CsaV3_7G000970 vs. NCBI nr
Match: KAG6589009.1 (hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           M CF  KCG   QV RI+ D  ++K  + ++DD   + EAP  +   R+  +RV SKERK
Sbjct: 1   MACFFLKCGGSRQVPRIQNDDGSKKPMETQQDD--TVDEAPVEISNQRQHQQRVDSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
               ++ L+R    + E  GWLAAWLEEAEG  EKDE+K L++  KR
Sbjct: 61  ----TTSLKRG--GKSESSGWLAAWLEEAEGHGEKDEIKALKEAAKR 99

BLAST of CsaV3_7G000970 vs. NCBI nr
Match: KAG6572110.1 (hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.0 bits (175), Expect = 3.5e-09
Identity = 52/105 (49.52%), Postives = 64/105 (60.95%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISR--KGHRRVRSKE 60
           M+CFL  CG   Q +RI+ D + RK +K+ R D IV+ E P T K  +  +  RRV   E
Sbjct: 1   MDCFLV-CGVSRQAMRIQADNNKRKVKKVVR-DGIVVDETPTTTKGKKWQRRRRRVGDNE 60

Query: 61  RKMMPSSSRLQRSQIERVELGGWLAAWLEEAE-GEREKDEVKELE 103
           R+    +SRLQR+   RVE GGWLAAWLEEAE  E EK   K LE
Sbjct: 61  RE----TSRLQRTDGGRVESGGWLAAWLEEAEMKELEKAHAKGLE 99

BLAST of CsaV3_7G000970 vs. NCBI nr
Match: KAG6589008.1 (hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-08
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 13  QVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERKMMPSSSRLQRSQ 72
           QV RI +D  ++K RK +RDD   +G+  + +   R+  RRV +KE+K M   S   R +
Sbjct: 130 QVSRIYDDEGSKKSRKTQRDD--TVGDTLEAIGNKRRRQRRVDNKEQKTM---SFTLRQR 189

Query: 73  IERVELGGWLAAWLEEAEGEREKDEVKELEK 104
            ER ELGGWLAAWLEEAE   EKDE+K LE+
Sbjct: 190 GERNELGGWLAAWLEEAESHTEKDEIKALEE 215

BLAST of CsaV3_7G000970 vs. NCBI nr
Match: KAG7011763.1 (Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 2.4e-05
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 0

Query: 15  LRIREDGHNRKERKIERDDDIVIGEAPKTMKISR--KGHRRVRSKERKMMPSSSRLQRSQ 74
           +RI+ D + RK +K+ R D IV+ E P T K  +  +  RRV   ER+    +SRLQR+ 
Sbjct: 226 MRIQADNNKRKVKKVVR-DGIVVDETPTTTKGKKWQRRRRRVGDNERE----TSRLQRTD 285

Query: 75  IERVELGGWLAAWLEEAE-GEREKDEVKELE 103
             RVE GGWLAAWLEEAE  E EK   K LE
Sbjct: 286 GGRVESGGWLAAWLEEAEMKELEKAHAKGLE 311

BLAST of CsaV3_7G000970 vs. ExPASy TrEMBL
Match: A0A0A0K1A5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.4e-50
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60
           MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK
Sbjct: 1   MNCFLAKCGTLNQVLRIREDGHNRKERKIERDDDIVIGEAPKTMKISRKGHRRVRSKERK 60

Query: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 108
           MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR
Sbjct: 61  MMPSSSRLQRSQIERVELGGWLAAWLEEAEGEREKDEVKELEKEIKR 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43248.17.0e-50100.00hypothetical protein Csa_020351 [Cucumis sativus][more]
KAG6589009.11.6e-0944.86hypothetical protein SDJN03_17574, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6572110.13.5e-0949.52hypothetical protein SDJN03_28838, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589008.12.3e-0849.45hypothetical protein SDJN03_17573, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7011763.12.4e-0549.45Ubiquitin-conjugating enzyme E2 28 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K1A53.4e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G011880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 84..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G000970.1CsaV3_7G000970.1mRNA