CsaV3_7G000400 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G000400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	30S ribosomal protein S31, mitochondrial
Location	chr7: 493878 .. 494408 (-)
RNA-Seq Expression	CsaV3_7G000400
Synteny	CsaV3_7G000400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGTTCCTAGTTCCACTCCTTGGCCTCTTCCTTTCAAGCTCATCTGATTTCAATCGCTTTTGTGTTCCTTCTGATTGCATAAAACTTTACTTTCATGATTTGTAATTTTGAAAAAAACAAATCAAGGGTTTCTCGAGGTTTGGGTTTATCTCAAGTCAAGAATTGTTCTATAGTGATTAATCGTCTTGCTGGCGTGTTTTCGATTTCATATTTGACCCATTTTCCTTCGAATCATATCTGCAAATTAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG

mRNA sequence

ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG

Coding sequence (CDS)

ATGGCGATGGCGCAGTGGTTCGGCGCAGTAGCTAGGGGAGTTATGGCGGCGGAGAGACGTTCTCCTTCTCTAACGTCGTCCATGGCGGTCGAAGGACTGGTCCCGATTCTCTGTGGACGAGGTGACAAGAGGACGAAGAGAGGGAAGAGATTCAAAGGCTCCTACGGAAACGCTAGGCCGAAGAAGGAGAAGAAGATACAGCGAATCAAGGATAAAATCGAGGGTTCAATTGCCTGCAACTCTGGGATTGATTTTGAGAAGCTTGCATTACAAATTGATGTTTAG

Protein sequence

MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV*

Homology

[Close]

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: KAE8645652.1 (hypothetical protein Csa_020557 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 2.5e-43
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV 95
          KKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV
Sbjct: 61 KKEKKIQRIKDKIEGSIACNSGIDFEKLALQIDV 94

[Close]

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_011658557.1 (30S ribosomal protein S31, mitochondrial [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 3.7e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_008448047.1 (PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1 30S ribosomal protein S31 [Cucumis melo var. makuwa] >TYK22378.1 30S ribosomal protein S31 [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 4.6e-29
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQW GAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDK+TKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_022933003.1 (30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30S ribosomal protein S31, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023529503.1 30S ribosomal protein S31, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo] >KAG6588415.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022258.1 30S ribosomal protein S31, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.4 bits (337), Expect = 5.1e-28
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. NCBI nr
Match: XP_038888313.1 (30S ribosomal protein S31, mitochondrial [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 3.3e-27
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQ  GA+ARGVMAAERRSPSLTSSMA EGLVPILCGRGDK+TK+GKRFKGSYGNARP
Sbjct: 1  MAMAQLCGALARGVMAAERRSPSLTSSMAAEGLVPILCGRGDKKTKKGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy Swiss-Prot
Match: Q9SJU8 (30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g21290 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-15
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKRTKRGKR 60
          MA  QW GA+ R +M  +R S +L  S     L P           LCGRGDK+TK+GKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIE 75
          FKGSYGN+R KK+K I+RIKDK+E
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLE 84

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy Swiss-Prot
Match: P47909 (30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0528100 PE=3 SV=2)

HSP 1 Score: 72.8 bits (177), Expect = 2.4e-12
Identity = 32/39 (82.05%), Postives = 38/39 (97.44%), Query Frame = 0


Query: 36 ILCGRGDKRTKRGKRFKGSYGNARPKKEKKIQRIKDKIE 75
          + CGRGDK+TKRGKRFKGSYGNARPK+EKKI+RIKD++E
Sbjct: 30 VTCGRGDKKTKRGKRFKGSYGNARPKREKKIERIKDRVE 68

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy Swiss-Prot
Match: P47910 (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 PE=1 SV=2)

HSP 1 Score: 50.1 bits (118), Expect = 1.6e-05
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 13 GVMAAERRSPSLTSSMAVEGLVPIL-CGRGDKRTKRGKRFKGSYGNARPKKEKK 66
          GV  +   + SL+SS++    +P++ CGRGD++T +GKRF  S+GNARPK + K
Sbjct: 28 GVSLSSPPTLSLSSSVSTSPALPLIYCGRGDRKTAKGKRFNHSFGNARPKNKNK 81

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy TrEMBL
Match: A0A0A0K141 (30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006280 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.8e-31
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy TrEMBL
Match: A0A5A7SX60 (30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G001030 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQW GAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDK+TKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy TrEMBL
Match: A0A1S3BI88 (30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.2e-29
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAMAQW GAVARGV+AAERRSPSLTSSMAVEGLVPILCGRGDK+TKRGKRFKGSYGNARP
Sbjct: 1  MAMAQWCGAVARGVIAAERRSPSLTSSMAVEGLVPILCGRGDKKTKRGKRFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKI+RIKDKIE
Sbjct: 61 KKEKKIERIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy TrEMBL
Match: A0A6J1F3E9 (30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111439636 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.5e-28
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARP 60
          MAM QW GAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARP
Sbjct: 1  MAMMQWCGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARP 60

Query: 61 KKEKKIQRIKDKIE 75
          KKEKKIQRIKDKIE
Sbjct: 61 KKEKKIQRIKDKIE 74

[Close]

BLAST of CsaV3_7G000400 vs. ExPASy TrEMBL
Match: A0A6J1GKP4 (30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111455241 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.3e-26
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 3  MAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPILCGRGDKRTKRGKRFKGSYGNARPKK 62
          MAQW GA+A+ VMAAERRSPSLTSSMAVEGLVPILCGRGDK+TK+GK FKGSYGNARPKK
Sbjct: 1  MAQWCGALAKRVMAAERRSPSLTSSMAVEGLVPILCGRGDKKTKKGKIFKGSYGNARPKK 60

Query: 63 EKKIQRIKDKIE 75
          EKKIQRIKDKIE
Sbjct: 61 EKKIQRIKDKIE 72

[Close]

BLAST of CsaV3_7G000400 vs. TAIR 10
Match: AT2G21290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-16
Identity = 44/84 (52.38%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 1  MAMAQWFGAVARGVMAAERRSPSLTSSMAVEGLVPI----------LCGRGDKRTKRGKR 60
          MA  QW GA+ R +M  +R S +L  S     L P           LCGRGDK+TK+GKR
Sbjct: 1  MAAMQWCGAMTRRIMMTQRTSAALNCSARYSSLSPACAAPAVSEMDLCGRGDKKTKKGKR 60

Query: 61 FKGSYGNARPKKEKKIQRIKDKIE 75
          FKGSYGN+R KK+K I+RIKDK+E
Sbjct: 61 FKGSYGNSRGKKQKMIERIKDKLE 84

[Close]

BLAST of CsaV3_7G000400 vs. TAIR 10
Match: AT2G38140.1 (plastid-specific ribosomal protein 4 )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 17/30 (56.67%), Postives = 24/30 (80.00%), Query Frame = 0


Query: 36 ILCGRGDKRTKRGKRFKGSYGNARPKKEKK 66
          + CGRGD++T +GKRF  S+GNARP+ + K
Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSK 82

The following BLAST results are available for this feature:

BLAST of CsaV3_7G000400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645652.1	2.5e-43	100.00	hypothetical protein Csa_020557 [Cucumis sativus]	[more]
XP_011658557.1	3.7e-31	100.00	30S ribosomal protein S31, mitochondrial [Cucumis sativus]	[more]
XP_008448047.1	4.6e-29	94.59	PREDICTED: 30S ribosomal protein S31, mitochondrial [Cucumis melo] >KAA0033759.1...	[more]
XP_022933003.1	5.1e-28	93.24	30S ribosomal protein S31, mitochondrial [Cucurbita moschata] >XP_023529502.1 30...	[more]
XP_038888313.1	3.3e-27	91.89	30S ribosomal protein S31, mitochondrial [Benincasa hispida]	[more]

BLAST of CsaV3_7G000400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJU8	6.7e-15	52.38	30S ribosomal protein S31, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g...	[more]
P47909	2.4e-12	82.05	30S ribosomal protein S31, mitochondrial OS=Oryza sativa subsp. japonica OX=3994...	[more]
P47910	1.6e-05	46.30	30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS31 P...	[more]

BLAST of CsaV3_7G000400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K141	1.8e-31	100.00	30S ribosomal protein S31, mitochondrial OS=Cucumis sativus OX=3659 GN=Csa_7G006...	[more]
A0A5A7SX60	2.2e-29	94.59	30S ribosomal protein S31 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BI88	2.2e-29	94.59	30S ribosomal protein S31, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490344...	[more]
A0A6J1F3E9	2.5e-28	93.24	30S ribosomal protein S31, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1GKP4	2.3e-26	90.28	30S ribosomal protein S31, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of CsaV3_7G000400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21290.1	4.7e-16	52.38	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G38140.1	2.4e-04	56.67	plastid-specific ribosomal protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030826	30S ribosomal protein	TIGRFAM	TIGR04560	TIGR04560	coord: 39..62 e-value: 1.7E-10 score: 38.7
IPR030826	30S ribosomal protein	PFAM	PF17067	RPS31	coord: 32..65 e-value: 3.7E-9 score: 36.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..66
None	No IPR available	PANTHER	PTHR34550:SF3	30S RIBOSOMAL PROTEIN S31, MITOCHONDRIAL	coord: 1..74
IPR044695	30S ribosomal protein S31, plant	PANTHER	PTHR34550	30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G000400.1	CsaV3_7G000400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome