CsaV3_6G053130 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G053130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 31010239 .. 31012077 (-)
RNA-Seq Expression	CsaV3_6G053130
Synteny	CsaV3_6G053130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGGAGTGCGACGATGATCGGAGCCCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCGTACGTTCCAAACCCTAGTCTTTTCATTTCCCCATCATAACCCTTCTCTTCTGTTTCGATTTCGATTTCGATTTCTATCATCGATTCCATCTCATAATTTTGCAGATCCTTGGGAGCATTTAGTGGGAATGGGATTGGGAGCCGTCTTCGTCAATCAGCTGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGATAAGGCCAAAGCCGCCAACGAGCGCCGCTACTTTGGTATTTGTTTTCTTCTCTCATCTTATTTCCTCTATGTTCCTCTTATACCATTCCAAATTTCGATTCCTGCTCTTACTCTTTTATCAACTCCATCGATTTGGGCTTCGTATTTTTATCTAATAAATTTCGTCTCCTTCTTTTTCTGTCCCCTACATGTACACTTATTGTGTGACTTCCCGCCTTATGTCGCGTGAGGTCGTAAGGTTTGGCCAATGTTCTATAACCTTTTAAGGATCAGAGTATGATAATCGTCTGCACATGGGTTTGAATATGGTGGACCAATGGGTTGTTAATTTCCGTGTTAGACCGCAATTACATAGAAAATATTAAGTTATTAGGTTATTGTAATTTTAAGAATGGAAGGAGTGGCATTTTTTAATGAACAAGAGGCGAGATCAGAAAAGAAGAGATTGGGGTGATCAAATATTTCCCCAGCCAAGGTGCATATAGGAACACCCCCCATAGCAATTAATGAGTTACAGTGATTAGTTTAGGTACACAATCCCTATGTGGAGCATTTCAATATGAGATCATATTAATCTTGTGGAGGGAATTTGATGATATTTTGGATGCTTTTCCTAATGGAGAGAAGTTATAAGACAAACAATTCTGAAAAAAAAAATGCTTACATGAATTTGTTATGCTGTTTTCAATCATCTTCCTTACTACACCTTAAGAAACAATCTAAATGCTAAAACACGTGGCACTCCCCAATATTAATATGATCTCTTGGTAATGTACAAGTTGGTTAACGAAGAAAGAAAATAAAAGACTATGCAATCTAAAACATACTTAACAACATGTAGTTGGAGGCAAAAGGTGAACTTCGGTTAAGGATGGGGACTACAATTCCGCTCTCTTCCATAGGGTGGCAAGATGCCATAGGAGTAGGAATAGAATTAGCCCTTTGATTTCTGAGGCTGGGGAGGTGTTTCAGAAGGACGAGATGATTGAGAAGGAGATCCTTAGTCCCATGTTATACAGCCCGGAGGTCTCCACCAAACCCTTTGTTCAAGGGATTGTGGGGAACCCTCCTCGAGCTTGCTCGCGCTCTCATTTTGTCTACTTCTCTTTCTTCCTACTTATGAGAGGATGTAGTCCTCGTTGCGGCACATCTTATCAATAGAATGTCATCTTGGATCCTCCACCTCCAAACACCTCTTGAATGTCTCAAGGAGTTCTACCCTACCACACACCAAATTGCTTATGTTCTCACCAAAGGATTACCTAGGCAGAACTTTGACTCTTGTCTTAGCAAGTTGGGTCTCATTGTGACATCTATGCTCCAACTTGAGGGGGAGGGGGAGTGTTGGAAATAAGTTAAAATAGCCAGTAAACATATATGTTTCAGAAGGATGAGATGATTGAGAAGGAGATCCTTAGTTTCCTCCCCATGTTATAGAGCCCGGAGGTCTCCACCAAACCCTTTGTTCAAGGGATCGTGGGGAACCCTCCTCGAGGTTGCTTGCTCTCTCATGAGGGAGAGTGTTGGAAATAAGAGGCTA

mRNA sequence

ATGGCATGGAGTGCGACGATGATCGGAGCCCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCTTGGGAGCATTTAGTGGGAATGGGATTGGGAGCCGTCTTCGTCAATCAGCTGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGATAAGGCCAAAGCCGCCAACGAGCGCCGCTACTTTGGTATTTGTTTTCTTCTCTCATCTTATTTCCTCTATGTTCCTCTTATACCATTCCAAATTTCGATTCCTGCTCTTACTCTTTTATCAACTCCATCGATTTGGGCTTCGTATTTTTATCTAATAAATTTCGTCTCCTTCTTTTTCTGTCCCCTACATGTACACTTATTGTGTGACTTCCCGCCTTATGTCGCGTGA

Coding sequence (CDS)

ATGGCATGGAGTGCGACGATGATCGGAGCCCTTCTGGGCCTCGGCACTCAGATGTACTCCAATGCTCTCCGTAAACTCCCTTACATGCGCCATCCTTGGGAGCATTTAGTGGGAATGGGATTGGGAGCCGTCTTCGTCAATCAGCTGGTCAAATGGGACGCTAAGCTCCAGGAGGACCTTGACAAGATGCTCGATAAGGCCAAAGCCGCCAACGAGCGCCGCTACTTTGGTATTTGTTTTCTTCTCTCATCTTATTTCCTCTATGTTCCTCTTATACCATTCCAAATTTCGATTCCTGCTCTTACTCTTTTATCAACTCCATCGATTTGGGCTTCGTATTTTTATCTAATAAATTTCGTCTCCTTCTTTTTCTGTCCCCTACATGTACACTTATTGTGTGACTTCCCGCCTTATGTCGCGTGA

Protein sequence

MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDLDKMLDKAKAANERRYFGICFLLSSYFLYVPLIPFQISIPALTLLSTPSIWASYFYLINFVSFFFCPLHVHLLCDFPPYVA*

Homology

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BLAST of CsaV3_6G053130 vs. NCBI nr
Match: KAE8647788.1 (hypothetical protein Csa_003686 [Cucumis sativus])

HSP 1 Score: 289.3 bits (739), Expect = 1.8e-74
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
           MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL
Sbjct: 1   MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61  DKMLDKAKAANERRYFGICFLLSSYFLYVPLIPFQISIPALTLLSTPSIWASYFYLINFV 120
           DKMLDKAKAANERRYFGICFLLSSYFLYVPLIPFQISIPALTLLSTPSIWASYFYLINFV
Sbjct: 61  DKMLDKAKAANERRYFGICFLLSSYFLYVPLIPFQISIPALTLLSTPSIWASYFYLINFV 120

Query: 121 SFFFCPLHVHLLCDFPPYVA 141
           SFFFCPLHVHLLCDFPPYVA
Sbjct: 121 SFFFCPLHVHLLCDFPPYVA 140

[Close]

BLAST of CsaV3_6G053130 vs. NCBI nr
Match: KAG2685031.1 (hypothetical protein I3760_10G105500 [Carya illinoinensis] >KAG6692281.1 hypothetical protein I3842_10G107300 [Carya illinoinensis] >KAG7960060.1 hypothetical protein I3843_10G102900 [Carya illinoinensis])

HSP 1 Score: 164.1 bits (414), Expect = 8.9e-37
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQLVKWDA+LQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLDKAKAANERRYFGICFLLSSYFLYV 90
          DKML KAKAANERRYFGI F  SS F  V
Sbjct: 61 DKMLAKAKAANERRYFGISFSFSSSFFSV 89

[Close]

BLAST of CsaV3_6G053130 vs. NCBI nr
Match: KAA0052414.1 (uncharacterized protein E6C27_scaffold120G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLDKAKAANERRYFG 78
          DKMLDKAKAANERRYFG
Sbjct: 61 DKMLDKAKAANERRYFG 77

[Close]

BLAST of CsaV3_6G053130 vs. NCBI nr
Match: KAG2689400.1 (hypothetical protein I3760_09G137100 [Carya illinoinensis] >KAG6696262.1 hypothetical protein I3842_09G139500 [Carya illinoinensis] >KAG7963797.1 hypothetical protein I3843_09G135800 [Carya illinoinensis])

HSP 1 Score: 162.9 bits (411), Expect = 2.0e-36
Identity = 78/82 (95.12%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVFVNQLVKWDA+LQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFVNQLVKWDAQLQEDL 60

Query: 61 DKMLDKAKAANERRYFGICFLL 83
          DKMLDKAKAANERRYFG  FLL
Sbjct: 61 DKMLDKAKAANERRYFGNFFLL 82

[Close]

BLAST of CsaV3_6G053130 vs. NCBI nr
Match: XP_008439421.1 (PREDICTED: uncharacterized protein LOC103484235 [Cucumis melo])

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLDKAKAANERRYF 77
          DKMLDKAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of CsaV3_6G053130 vs. ExPASy TrEMBL
Match: A0A5A7UAL0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G00090 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.6e-37
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLDKAKAANERRYFG 78
          DKMLDKAKAANERRYFG
Sbjct: 61 DKMLDKAKAANERRYFG 77

[Close]

BLAST of CsaV3_6G053130 vs. ExPASy TrEMBL
Match: A0A0A0KJ47 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538720 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLDKAKAANERRYF 77
          DKMLDKAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of CsaV3_6G053130 vs. ExPASy TrEMBL
Match: A0A1S3AYR6 (uncharacterized protein LOC103484235 OS=Cucumis melo OX=3656 GN=LOC103484235 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60

Query: 61 DKMLDKAKAANERRYF 77
          DKMLDKAKAANERRYF
Sbjct: 61 DKMLDKAKAANERRYF 76

[Close]

BLAST of CsaV3_6G053130 vs. ExPASy TrEMBL
Match: A0A067GPI2 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034827mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.1e-36
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQLVKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLDKAKAANERRYFGIC 80
          DKML+KAKAANERRYFG C
Sbjct: 61 DKMLEKAKAANERRYFGRC 79

[Close]

BLAST of CsaV3_6G053130 vs. ExPASy TrEMBL
Match: A0A2H5P542 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_104510 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 8.1e-36
Identity = 74/79 (93.67%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHL+GMGLGAVFVNQLVKWDA+LQ+DL
Sbjct: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLLGMGLGAVFVNQLVKWDAQLQQDL 60

Query: 61 DKMLDKAKAANERRYFGIC 80
          DKML+KAKAANERRYFG C
Sbjct: 61 DKMLEKAKAANERRYFGRC 79

[Close]

BLAST of CsaV3_6G053130 vs. TAIR 10
Match: AT4G20150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, mitochondrial respiratory chain complex I, respiratory chain complex I; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-33
Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MAWSATMIGALLGLGTQMYSNALRKLPYMRHPWEHLVGMGLGAVFVNQLVKWDAKLQEDL 60
          M  SATM+GALLGLGTQMYSNALRKLPYMRHPWEH+VGMGLGAVF NQLVKWD KL+EDL
Sbjct: 1  MPISATMVGALLGLGTQMYSNALRKLPYMRHPWEHVVGMGLGAVFANQLVKWDVKLKEDL 60

Query: 61 DKMLDKAKAANERRYF 77
          D ML KA+AANERRYF
Sbjct: 61 DVMLAKARAANERRYF 76

The following BLAST results are available for this feature:

BLAST of CsaV3_6G053130 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647788.1	1.8e-74	100.00	hypothetical protein Csa_003686 [Cucumis sativus]	[more]
KAG2685031.1	8.9e-37	89.89	hypothetical protein I3760_10G105500 [Carya illinoinensis] >KAG6692281.1 hypothe...	[more]
KAA0052414.1	2.0e-36	100.00	uncharacterized protein E6C27_scaffold120G00090 [Cucumis melo var. makuwa]	[more]
KAG2689400.1	2.0e-36	95.12	hypothetical protein I3760_09G137100 [Carya illinoinensis] >KAG6696262.1 hypothe...	[more]
XP_008439421.1	1.3e-35	100.00	PREDICTED: uncharacterized protein LOC103484235 [Cucumis melo]	[more]

BLAST of CsaV3_6G053130 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G053130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAL0	9.6e-37	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KJ47	6.2e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G538720 PE=4 SV=1	[more]
A0A1S3AYR6	6.2e-36	100.00	uncharacterized protein LOC103484235 OS=Cucumis melo OX=3656 GN=LOC103484235 PE=...	[more]
A0A067GPI2	8.1e-36	93.67	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034827mg PE=4 SV=1	[more]
A0A2H5P542	8.1e-36	93.67	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_104510 PE=4 SV=1	[more]

BLAST of CsaV3_6G053130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G20150.1	1.7e-33	86.84	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 53..73
None	No IPR available	PANTHER	PTHR36052	EXCITATORY AMINO ACID TRANSPORTER	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G053130.1	CsaV3_6G053130.1	mRNA