CsaV3_6G052800 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G052800
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-H2 finger protein ATL74-like
Location	chr6: 30789183 .. 30789671 (+)
RNA-Seq Expression	CsaV3_6G052800
Synteny	CsaV3_6G052800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCCTCACCTTCTCCTTCCCTTAATCCATCCCCAAGCGTGTCTATCACGGACCCTCACGAGCATGTACTAGGTGGCAACTTCAACCTCATTGTTCTCGTCGTTGCAATTGTTTGCGCCGTTGTTTGCACGCTTGGTCTAAATACCATGCTGATATGTATACTTCAATGTGCGAATCACTCTCTTAGACAAACAGTCCAATGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACATGGTTGCCCTCCCAACTTCAACTTACACCAACTCTGGATCACCGATTTCGCCTTCATCTACTTCAGCCTGTGCTATCTGCCTCATCGACTTCTCAAACGGGGATAAAGTACGAGTGCTGCCGAACTGTGCTCATAGGTATCATGTCAGTTGCATTGATAAATGGTTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGTCCAAGGACTCTATAGATCACATTGTGTAA

mRNA sequence

ATGGAGCCCTCACCTTCTCCTTCCCTTAATCCATCCCCAAGCGTGTCTATCACGGACCCTCACGAGCATGTACTAGGTGGCAACTTCAACCTCATTGTTCTCGTCGTTGCAATTGTTTGCGCCGTTGTTTGCACGCTTGGTCTAAATACCATGCTGATATGTATACTTCAATGTGCGAATCACTCTCTTAGACAAACAGTCCAATGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACATGGTTGCCCTCCCAACTTCAACTTACACCAACTCTGGATCACCGATTTCGCCTTCATCTACTTCAGCCTGTGCTATCTGCCTCATCGACTTCTCAAACGGGGATAAAGTACGAGTGCTGCCGAACTGTGCTCATAGGTATCATGTCAGTTGCATTGATAAATGGTTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGTCCAAGGACTCTATAGATCACATTGTGTAA

Coding sequence (CDS)

ATGGAGCCCTCACCTTCTCCTTCCCTTAATCCATCCCCAAGCGTGTCTATCACGGACCCTCACGAGCATGTACTAGGTGGCAACTTCAACCTCATTGTTCTCGTCGTTGCAATTGTTTGCGCCGTTGTTTGCACGCTTGGTCTAAATACCATGCTGATATGTATACTTCAATGTGCGAATCACTCTCTTAGACAAACAGTCCAATGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACATGGTTGCCCTCCCAACTTCAACTTACACCAACTCTGGATCACCGATTTCGCCTTCATCTACTTCAGCCTGTGCTATCTGCCTCATCGACTTCTCAAACGGGGATAAAGTACGAGTGCTGCCGAACTGTGCTCATAGGTATCATGTCAGTTGCATTGATAAATGGTTGCTGTCTCACTCTTCTTGCCCCACCTGCAGGCATCAGCTCAAGTCCAAGGACTCTATAGATCACATTGTGTAA

Protein sequence

MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV*

Homology

[Close]

BLAST of CsaV3_6G052800 vs. NCBI nr
Match: KAE8647779.1 (hypothetical protein Csa_003277 [Cucumis sativus])

HSP 1 Score: 328.2 bits (840), Expect = 4.1e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60
           MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN
Sbjct: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60

Query: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120
           HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV
Sbjct: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120

Query: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 163
           RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV
Sbjct: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 162

[Close]

BLAST of CsaV3_6G052800 vs. NCBI nr
Match: KAA0052444.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] >TYK13378.1 RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 307.4 bits (786), Expect = 7.5e-80
Identity = 151/162 (93.21%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60
           MEPS SPSLNPSPSVSI DP EH LGGNFNLIV+VVAIVCAVVCTLGLNTMLICILQCAN
Sbjct: 7   MEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCAN 66

Query: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120
           HS RQTVQWVALRGLNSGMKKQD+VALPTSTYTNSGSP SPSSTSACAICLIDFSNGD +
Sbjct: 67  HSFRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSSTSACAICLIDFSNGDTI 126

Query: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 163
           RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 127 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 168

[Close]

BLAST of CsaV3_6G052800 vs. NCBI nr
Match: XP_008439485.1 (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 303.9 bits (777), Expect = 8.3e-79
Identity = 152/164 (92.68%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60
           MEPS SPSLNPSPSVSI DP EH LGGNFNLIV+VVAIVCAVVCTLGLNTMLICILQCAN
Sbjct: 7   MEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCAN 66

Query: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPI--SPSSTSACAICLIDFSNGD 120
           HSLRQTVQWVALRGLNSGMKKQD+VALPTSTYTNSGSP   SPSSTSACAICLIDFSNGD
Sbjct: 67  HSLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGD 126

Query: 121 KVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 163
            +RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 127 TIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 170

[Close]

BLAST of CsaV3_6G052800 vs. NCBI nr
Match: ADN34219.1 (ring zinc finger [Cucumis melo subsp. melo])

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-70
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 19  DPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 78
           DP EH LGGNFNLIV+VVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG
Sbjct: 2   DPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 61

Query: 79  MKKQDMVALPTSTYTNSGSPI--SPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCID 138
           MKKQD+VALPTSTYTNSGSP   SPSSTSACAICLIDFSNGD +RVLPNCAHRYHVSCID
Sbjct: 62  MKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCID 121

Query: 139 KWLLSHSSCPTCRHQLKSKDSIDHIV 163
           KWLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 122 KWLLSHSSCPTCRHQLKSKDSIEHIV 147

[Close]

BLAST of CsaV3_6G052800 vs. NCBI nr
Match: XP_022977991.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 255.4 bits (651), Expect = 3.4e-64
Identity = 130/168 (77.38%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MEP--SPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQC 60
           MEP  SP+PS NP PSVS   PH+   G NFNL+V+V AIVCAVVCTLGLNTML CILQC
Sbjct: 19  MEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVCAVVCTLGLNTMLTCILQC 78

Query: 61  ANHSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGD 120
           ANH+LRQTVQWVALRGLN GMKKQDM+ALPTSTYTNS SP     TSACAICL+DFSNGD
Sbjct: 79  ANHTLRQTVQWVALRGLNLGMKKQDMIALPTSTYTNSDSP-----TSACAICLVDFSNGD 138

Query: 121 KVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLK----SKDSIDHIV 163
           K+R+LPNCAHRYHV+CID+WLLSHSSCPTCRHQLK    S  SI HIV
Sbjct: 139 KLRMLPNCAHRYHVACIDQWLLSHSSCPTCRHQLKPPKDSATSIHHIV 181

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-23
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 12  SPSVSITDPHEHVLGGNF-----------NLIVLVVAIVCAVVCTLGLNTMLICILQCAN 71
           +P++S TD +   LG +            ++++++ A++CA++C LG+N++L C+L+C  
Sbjct: 11  TPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTR 70

Query: 72  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 131
                         +  G+KK+ +  +P  +Y    SP      + C ICL DF  G+ V
Sbjct: 71  RFTPNEDPVDTNANVAKGIKKRALKVIPVDSY----SPELKMKATECLICLGDFVEGETV 130

Query: 132 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQL 153
           RVLP C H +HV CID WLLSHSSCPTCR  L
Sbjct: 131 RVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-21
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 20  PHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGM 79
           P E ++    +++V++ A++CA++C  G    L  +++CA   LR+          N G+
Sbjct: 17  PSEEMIAAESDMVVILSALLCALICVAG----LAAVVRCA--WLRRFTAGGDSPSPNKGL 76

Query: 80  KKQDMVALPTSTYT----NSGSPISPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCI 139
           KK+ + +LP ST+T     SG+      ++ CAICL DF++G+++RVLP C H +HV CI
Sbjct: 77  KKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECI 136

Query: 140 DKWLLSHSSCPTCRHQL 153
           DKWL+S SSCP+CR  L
Sbjct: 137 DKWLVSRSSCPSCRRIL 147

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-21
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 30  NLIVLVVAIVCAVVCTLGLNTMLICILQCA-NHSLRQTVQWVALRGLNSGMKKQDMVALP 89
           N+++++ A++CA++  LGLN++L C ++C    S       VA R   +G+KK+++   P
Sbjct: 33  NMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR---AGLKKRELKKFP 92

Query: 90  TSTYTNSGSPISPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCIDKWLLSHSSCPTC 149
            + Y   GS     + + CAICL +F++G++VRVLP C H +H+SCID WL+SHSSCP C
Sbjct: 93  VAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNC 150

Query: 150 RHQL 153
           RH L
Sbjct: 153 RHSL 150

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.2e-21
Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 10  NPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANH-SLRQTVQ 69
           NP P   I D +      + N+++++ A++CA++C L LN+ L C+L+     +    V 
Sbjct: 17  NPKPKGGINDTY-----FDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVS 76

Query: 70  WVALRGLN-------SGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKVR 129
             +    N       +G+KKQ +  +P   Y   GS I     + C ICL DF +G+KVR
Sbjct: 77  NASNANANLGRLAAATGLKKQALKQIPVGLY---GSGIIDMKATECLICLGDFEDGEKVR 136

Query: 130 VLPNCAHRYHVSCIDKWLLSHSSCPTCRHQL 153
           VLP C H +HV CID WLLS SSCPTCR  L
Sbjct: 137 VLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 20  PHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGL---N 79
           P E +L    +++V++ A++CA+VC  G    L  + +CA       V   A+      N
Sbjct: 15  PPEEILAAETDMVVILSALLCALVCVAG----LAAVARCAWLRRLTGVNPAAVGEAPPPN 74

Query: 80  SGMKKQDMVALPTSTYTNSGSPISPS------------STSACAICLIDFSNGDKVRVLP 139
            G+KK+ + ALP STYT S S  + +            S++ CAIC+ +FS G+++R+LP
Sbjct: 75  KGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILP 134

Query: 140 NCAHRYHVSCIDKWLLSHSSCPTCRHQL 153
            C+H +HV+CIDKWL S SSCP+CR  L
Sbjct: 135 LCSHAFHVACIDKWLTSRSSCPSCRRIL 158

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy TrEMBL
Match: A0A0A0KJ24 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86
Identity = 162/162 (100.00%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60
           MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN
Sbjct: 7   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 66

Query: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120
           HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV
Sbjct: 67  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 126

Query: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 163
           RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV
Sbjct: 127 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 168

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy TrEMBL
Match: A0A5A7UAN6 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010060 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.6e-80
Identity = 151/162 (93.21%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60
           MEPS SPSLNPSPSVSI DP EH LGGNFNLIV+VVAIVCAVVCTLGLNTMLICILQCAN
Sbjct: 7   MEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCAN 66

Query: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120
           HS RQTVQWVALRGLNSGMKKQD+VALPTSTYTNSGSP SPSSTSACAICLIDFSNGD +
Sbjct: 67  HSFRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSSTSACAICLIDFSNGDTI 126

Query: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 163
           RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 127 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 168

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy TrEMBL
Match: A0A1S3AYW1 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.0e-79
Identity = 152/164 (92.68%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60
           MEPS SPSLNPSPSVSI DP EH LGGNFNLIV+VVAIVCAVVCTLGLNTMLICILQCAN
Sbjct: 7   MEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCAN 66

Query: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPI--SPSSTSACAICLIDFSNGD 120
           HSLRQTVQWVALRGLNSGMKKQD+VALPTSTYTNSGSP   SPSSTSACAICLIDFSNGD
Sbjct: 67  HSLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGD 126

Query: 121 KVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 163
            +RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 127 TIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 170

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy TrEMBL
Match: E5GCL9 (Ring zinc finger OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 5.3e-71
Identity = 136/146 (93.15%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 19  DPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 78
           DP EH LGGNFNLIV+VVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG
Sbjct: 2   DPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 61

Query: 79  MKKQDMVALPTSTYTNSGSPI--SPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCID 138
           MKKQD+VALPTSTYTNSGSP   SPSSTSACAICLIDFSNGD +RVLPNCAHRYHVSCID
Sbjct: 62  MKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCID 121

Query: 139 KWLLSHSSCPTCRHQLKSKDSIDHIV 163
           KWLLSHSSCPTCRHQLKSKDSI+HIV
Sbjct: 122 KWLLSHSSCPTCRHQLKSKDSIEHIV 147

[Close]

BLAST of CsaV3_6G052800 vs. ExPASy TrEMBL
Match: A0A6J1ILJ0 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-64
Identity = 130/168 (77.38%), Postives = 141/168 (83.93%), Query Frame = 0


Query: 1   MEP--SPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQC 60
           MEP  SP+PS NP PSVS   PH+   G NFNL+V+V AIVCAVVCTLGLNTML CILQC
Sbjct: 19  MEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVCAVVCTLGLNTMLTCILQC 78

Query: 61  ANHSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGD 120
           ANH+LRQTVQWVALRGLN GMKKQDM+ALPTSTYTNS SP     TSACAICL+DFSNGD
Sbjct: 79  ANHTLRQTVQWVALRGLNLGMKKQDMIALPTSTYTNSDSP-----TSACAICLVDFSNGD 138

Query: 121 KVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLK----SKDSIDHIV 163
           K+R+LPNCAHRYHV+CID+WLLSHSSCPTCRHQLK    S  SI HIV
Sbjct: 139 KLRMLPNCAHRYHVACIDQWLLSHSSCPTCRHQLKPPKDSATSIHHIV 181

[Close]

BLAST of CsaV3_6G052800 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-24
Identity = 56/152 (36.84%), Postives = 85/152 (55.92%), Query Frame = 0


Query: 12  SPSVSITDPHEHVLGGNF-----------NLIVLVVAIVCAVVCTLGLNTMLICILQCAN 71
           +P++S TD +   LG +            ++++++ A++CA++C LG+N++L C+L+C  
Sbjct: 11  TPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTR 70

Query: 72  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 131
                         +  G+KK+ +  +P  +Y    SP      + C ICL DF  G+ V
Sbjct: 71  RFTPNEDPVDTNANVAKGIKKRALKVIPVDSY----SPELKMKATECLICLGDFVEGETV 130

Query: 132 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQL 153
           RVLP C H +HV CID WLLSHSSCPTCR  L
Sbjct: 131 RVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of CsaV3_6G052800 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-22
Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 0


Query: 20  PHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSGM 79
           P E ++    +++V++ A++CA++C  G    L  +++CA   LR+          N G+
Sbjct: 17  PSEEMIAAESDMVVILSALLCALICVAG----LAAVVRCA--WLRRFTAGGDSPSPNKGL 76

Query: 80  KKQDMVALPTSTYT----NSGSPISPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCI 139
           KK+ + +LP ST+T     SG+      ++ CAICL DF++G+++RVLP C H +HV CI
Sbjct: 77  KKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVECI 136

Query: 140 DKWLLSHSSCPTCRHQL 153
           DKWL+S SSCP+CR  L
Sbjct: 137 DKWLVSRSSCPSCRRIL 147

[Close]

BLAST of CsaV3_6G052800 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-22
Identity = 53/124 (42.74%), Postives = 82/124 (66.13%), Query Frame = 0


Query: 30  NLIVLVVAIVCAVVCTLGLNTMLICILQCA-NHSLRQTVQWVALRGLNSGMKKQDMVALP 89
           N+++++ A++CA++  LGLN++L C ++C    S       VA R   +G+KK+++   P
Sbjct: 33  NMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR---AGLKKRELKKFP 92

Query: 90  TSTYTNSGSPISPSSTSACAICLIDFSNGDKVRVLPNCAHRYHVSCIDKWLLSHSSCPTC 149
            + Y   GS     + + CAICL +F++G++VRVLP C H +H+SCID WL+SHSSCP C
Sbjct: 93  VAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHSSCPNC 150

Query: 150 RHQL 153
           RH L
Sbjct: 153 RHSL 150

[Close]

BLAST of CsaV3_6G052800 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 101.7 bits (252), Expect = 5.8e-22
Identity = 59/151 (39.07%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 10  NPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANH-SLRQTVQ 69
           NP P   I D +      + N+++++ A++CA++C L LN+ L C+L+     +    V 
Sbjct: 17  NPKPKGGINDTY-----FDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVS 76

Query: 70  WVALRGLN-------SGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKVR 129
             +    N       +G+KKQ +  +P   Y   GS I     + C ICL DF +G+KVR
Sbjct: 77  NASNANANLGRLAAATGLKKQALKQIPVGLY---GSGIIDMKATECLICLGDFEDGEKVR 136

Query: 130 VLPNCAHRYHVSCIDKWLLSHSSCPTCRHQL 153
           VLP C H +HV CID WLLS SSCPTCR  L
Sbjct: 137 VLPKCNHGFHVRCIDTWLLSRSSCPTCRQSL 159

[Close]

BLAST of CsaV3_6G052800 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = 0


Query: 20  PHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGL---N 79
           P E +L    +++V++ A++CA+VC  G    L  + +CA       V   A+      N
Sbjct: 15  PPEEILAAETDMVVILSALLCALVCVAG----LAAVARCAWLRRLTGVNPAAVGEAPPPN 74

Query: 80  SGMKKQDMVALPTSTYTNSGSPISPS------------STSACAICLIDFSNGDKVRVLP 139
            G+KK+ + ALP STYT S S  + +            S++ CAIC+ +FS G+++R+LP
Sbjct: 75  KGLKKKALQALPKSTYTASASTAAAADDLPCSSVGDGDSSTECAICITEFSEGEEIRILP 134

Query: 140 NCAHRYHVSCIDKWLLSHSSCPTCRHQL 153
            C+H +HV+CIDKWL S SSCP+CR  L
Sbjct: 135 LCSHAFHVACIDKWLTSRSSCPSCRRIL 158

The following BLAST results are available for this feature:

BLAST of CsaV3_6G052800 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647779.1	4.1e-86	100.00	hypothetical protein Csa_003277 [Cucumis sativus]	[more]
KAA0052444.1	7.5e-80	93.21	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] >TYK13378.1 RING-H2...	[more]
XP_008439485.1	8.3e-79	92.68	PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo]	[more]
ADN34219.1	1.1e-70	93.15	ring zinc finger [Cucumis melo subsp. melo]	[more]
XP_022977991.1	3.4e-64	77.38	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]

BLAST of CsaV3_6G052800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLC6	3.9e-23	36.84	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
O22755	2.2e-21	39.42	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LZV8	2.8e-21	42.74	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9SG96	8.2e-21	39.07	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9ZT49	1.8e-20	38.51	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]

BLAST of CsaV3_6G052800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ24	2.0e-86	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 P...	[more]
A0A5A7UAN6	3.6e-80	93.21	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AYW1	4.0e-79	92.68	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 S...	[more]
E5GCL9	5.3e-71	93.15	Ring zinc finger OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1ILJ0	1.6e-64	77.38	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE...	[more]

BLAST of CsaV3_6G052800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05280.1	2.8e-24	36.84	RING/U-box superfamily protein	[more]
AT2G17450.1	1.5e-22	39.42	RING-H2 finger A3A	[more]
AT5G01880.1	2.0e-22	42.74	RING/U-box superfamily protein	[more]
AT3G10910.1	5.8e-22	39.07	RING/U-box superfamily protein	[more]
AT4G35480.1	1.3e-21	38.51	RING-H2 finger A3B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 107..148 e-value: 6.8E-7 score: 38.9
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 106..149 e-value: 2.5E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 107..149 score: 12.061441
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 69..155 e-value: 7.0E-22 score: 78.9
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 23..160
None	No IPR available	PANTHER	PTHR45798:SF33	OS06G0666500 PROTEIN	coord: 23..160
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 107..149 e-value: 3.38707E-17 score: 68.8677
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 106..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G052800.1	CsaV3_6G052800.1	mRNA