CsaV3_6G052300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G052300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA-damage-repair/toleration protein DRT111, chloroplastic
Location	chr6: 30504591 .. 30508900 (+)
RNA-Seq Expression	CsaV3_6G052300
Synteny	CsaV3_6G052300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGAAAAATTTTTCTTTTGACTACGTCAGTTTCTCTAATACTTAGCTATACGTTTGTTAATTCGTCTTTCTTCGTTAATTTAGTGTATTTCATACACATTTTTTTTCCGTTTTGATACTGTTTACCAATCCGTCACCATCCGTATTTTGCTGGGAAAACCCTATTTTTCTACTTCATCACTGTCACTCAAATCCCTAAATTTTGAGTACTCGAAAGTTTTGCAAATTTATCAAATTTTGCCGACCACCGTCGACTGGAAATTTCCTTCTTCGACTCTGTTCCCATCTTGAAATCTCCGATGTTCTAGATATTTCAAGGAGAGAAGACAAAAGCTAGGTGTACGGTATGCTTGGTGGATTGTACGGGGACCTTCCTCCGCCCTCTTCGGCTGAGGAAGATAAGCCAACAAATTCTACCGTCTGGTCGAGCAGCACAAAGATGGCGCCTCCGACTCTTCGGAAGCCATCGTCCGTATTCGCGCCACAGACCGTTCTCAGATCTCAAAGCAAAATAAAAGCCGCCACCTCGACACACCCTAAGGTTTCGGTGTCAACGCAGGTGGAGGCATCTCAGCCAATTCTGGCCGAGGCTATTACACAACCGGCATTGGTGGCTGTGACGTCTACGGTTGTAGAGGAGTATGATCCAGCGAGGCCGAATGACTATGAGGAGTATAGGGTGGAGAAGAAGAGGAAGGCTATGGAGGCTGAGATGAGGAAGGAGCTTGAGAGACGTAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGAAAGAGAACATTCTGATTCTAGGATAAATATTTCGGGCGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCTCCACCAAGTAGCGTAGACGGCTTCAGCATTGGAAAGTCGGAGACTGGGGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACAGCGGCACAAAGGATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTTGGGAAGCAAGAACAAGGAATTACCACTCCTCTGATGGCAAAAAAGACAGATTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAAGTGAAGAGTGTTAACTTCAACGGGCTACCTACTCGGGTTCTTCTTCTCAGAAACATGGTACGTCCATGTAGAATTCTGTTAATTTTAAATGAGTTTTAGGCAGCAGAGTTTGTTTTCGGGGCAAGAATTTTAGTAGTTCTTGCTCATTGCTCAGAAATTTCGCAATTCTTAGTTAGATTGGATAAAATAGTTGGGAAGTAGGCTGATATTTGGATGGGAAATTTCTGGTTATGTCATAGCTTTCCTCGGGTTTCATTGGCTCTTTCTGTTTATATCCCTAACCAATGTTTTTTTATGGAAGAAGTCTAACTGAGGTAATAGAGGAGGCAAGAGGCCCGATTCAAATTCTAGATGACCTACAACCTTTGTGGTAGGAAGGATAAAAGGATTTGAAGAATAAATCCTTCAGTCCTATTTTTAGTAAAATTTCTGGTAAAAGAGCTTGTTGGATCACAGACTGGAAGAAGGAAGCAAAAATCTCTTGGTTTAATGTTGCCAAACCATTGTTTAGGGATATAAACTCAAAGATATCAAAGATTACTAGGAAATGAAATTACAAGTTCTGAATAAATAGGTGTTTTGGTTTTTGGAAACTGTTCCTTTTCTCCTATTGTTTTATGGCCAGTTTCATCTTTGTTAAGGAAACTTTTGAATTCTCAGCTAAATTCTGAATTTTTTTTCTTCAGTGTCAAAAAACCTGTTAATCATATATATCCTTATTGTGAATCATATAAATCAACGTATTTTTTTCTTAGAAAAACAAAAGAACCAAGTGTTTCTTTGTGAAATATGAGAAGAACTAGTGAGTAGACAAACATAAAGTTCAAAAAATAGGAAACTGAATACGAAATCATTGTCAAACAGGATCTAAATGTTTCGGGTGTGATACTATTGGGGTTTCATGAAGTTAGTTGGTAAAGAGGTACTGGGTAGTACTACTAGAGTATGAGCTGTTTTCAAGCTTTAACGGAAGCTGTCATTTTCTATATTCTATTTTGTAAACTTCCATTTTGGTTATGAGTTACATTCAGCTTTTTTATTTGATCATAGGGGTTATTTGAACACCTTATGTGAGAATATTTACTCTCATGAAAGACCACTATTTGTAAACTGTACGTGGAGTTTCATGACAAATGTATGACAGATTGTGTAAATATGGTAGAAAAAACAAGATATATTTCAGATTATTATTATTTAACATAAGAATCTTGTTTTATATGGTTGAACCTTTCCCTCCCTGTATCCTAGCGAGTAGCGACTACTACATACAATTGTGAAGCTAGGTTATGTTTTAATTGTCACTAAACAATTTAGATGATAGATGTCACATAGTGGTTTAATATTCTAATCTTTCATTTGTGCTTATGATGCTTTGGAGATTTAGTAATTTCCGCTGTTTAATAATTTAACGGATTTTACATCCTTTAAGCGTTTGCATTAGGAGAGTTAGACAAGGTAATTGGGAGGTGTACCAGTGTATATAAACTGATTAGAGAGACTGTGAGAGGGAGAGAGCAGACCTCTTATCCTGCCACTTGTATGGGATACTTATCCTGAATAGAGGTTATGAAATTTCTACCATAAACACAGAATTTTCATTAACTAACAATAAAAGATTTTGGGCCGTTTGTTTTTAGGTGGCAAATATGAATGCTTCTCAGTGGTGTTCTCATCCCAAATTATTTACTGGGCTTTCTTTATAGGATATTTGTTGGAGTTAGGGAAGCTTTATATTCTCTCAGTTTTTAATTTCTCTCCCTTTTGAAATTTGTATCTTTGGAAAGTAGTCTAGAACAAAAAGGAAAAAACAGTATCAATCAAGATAGGGATTCATCATTATGTAAGAAGAGTATCAACTTGTAGGGATATTTCTTTATAACCCAGATCAATTTCAGTTTTGATAGACGTGATCACACGTGAGTATAGCATGCTCTATTTATGCATAATGCTAAGCGAGTGGTTTTATCTCCGAGGATATCTCAATGATCGAGCCTTTGATGAATTAAGCATTTTTTATATTGTAGAAAGGCACTGCATTTTTCTTCAGACGTCTAAAGCATCTAAACTTGTGATTTTTTCTGATGAGAATAATGAGAATGGCTGCCTTGTTTGATTTTTCTTGAAGGTTGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTAACACGAGTTCTAATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACAAAGGCTTTGGTTGATCTTGATGGTCGGTACTTTGGTGGAAGAGTGGTTCGAGCTACATTTTACGACGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGAAATCCACAAAATACACCAGAAAAAAGAAACGCCAAACATGCTCATTCTTGATTGATGAAGCTACGATTAATTTGGATTGGATTGTGCAATAACTTTCCTATTGTAAAGAGATTTTCTCACGATGTTGTTGACTGAATGAATGAAGATCAAGAATGGAATTGTTGAACTTGAAATTATCTTATTAACTAGTGCAGATTGTTCTAATCTAATAGTTGCTTGAAGATTCATGTTTCGTTGGCAGATTACCAAAAACTGGCTTTCGTTGCAGTCATTATGACAACATTTTTGTTTGTTTCTCGAGACTGGACTGAATGATGGTGCACTTGGTAAGAGACATTTTGACCATCCAAGATAAACCCCTTGACGAGTTCATTCTTTTCTTGTATTCATAGTTCTATTGGTTAATAAAAGCTTAGGAAGATTAGCTTATTTATTTAGTCCCAGATTCAATGATGTCTTGATTGATTAGTCTCAACCAAGATTGTAATATGGTTTTGTTGGTACAATAAGAGACTGACAGCATCTCTGTTTGAATAGCACAACAAGTTGATGAAGCTTTTAGATTGGCATTGTTTTGGGCTTCGAGTGGATTGTCATTGGGCTTTGACTGTAATTCTTGGAAAAATCCAGGACTTACTTTTATGGTTAAATAAAAAACAAAAGGTAAAGTTCGTAGTATTGCTAAAGTTTCTTTTTCATGTAATAAACGATAAAGTATCTTGCAGTAGCCATTTCTATATAAGTTTTTGTTAATAAAAAATATTTCTTTTATTGT

mRNA sequence

ATGCTTGGTGGATTGTACGGGGACCTTCCTCCGCCCTCTTCGGCTGAGGAAGATAAGCCAACAAATTCTACCGTCTGGTCGAGCAGCACAAAGATGGCGCCTCCGACTCTTCGGAAGCCATCGTCCGTATTCGCGCCACAGACCGTTCTCAGATCTCAAAGCAAAATAAAAGCCGCCACCTCGACACACCCTAAGGTTTCGGTGTCAACGCAGGTGGAGGCATCTCAGCCAATTCTGGCCGAGGCTATTACACAACCGGCATTGGTGGCTGTGACGTCTACGGTTGTAGAGGAGTATGATCCAGCGAGGCCGAATGACTATGAGGAGTATAGGGTGGAGAAGAAGAGGAAGGCTATGGAGGCTGAGATGAGGAAGGAGCTTGAGAGACGTAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGAAAGAGAACATTCTGATTCTAGGATAAATATTTCGGGCGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCTCCACCAAGTAGCGTAGACGGCTTCAGCATTGGAAAGTCGGAGACTGGGGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACAGCGGCACAAAGGATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTTGGGAAGCAAGAACAAGGAATTACCACTCCTCTGATGGCAAAAAAGACAGATTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAAGTGAAGAGTGTTAACTTCAACGGGCTACCTACTCGGGTTCTTCTTCTCAGAAACATGGTTGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTAACACGAGTTCTAATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACAAAGGCTTTGGTTGATCTTGATGGTCGGTACTTTGGTGGAAGAGTGGTTCGAGCTACATTTTACGACGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA

Coding sequence (CDS)

ATGCTTGGTGGATTGTACGGGGACCTTCCTCCGCCCTCTTCGGCTGAGGAAGATAAGCCAACAAATTCTACCGTCTGGTCGAGCAGCACAAAGATGGCGCCTCCGACTCTTCGGAAGCCATCGTCCGTATTCGCGCCACAGACCGTTCTCAGATCTCAAAGCAAAATAAAAGCCGCCACCTCGACACACCCTAAGGTTTCGGTGTCAACGCAGGTGGAGGCATCTCAGCCAATTCTGGCCGAGGCTATTACACAACCGGCATTGGTGGCTGTGACGTCTACGGTTGTAGAGGAGTATGATCCAGCGAGGCCGAATGACTATGAGGAGTATAGGGTGGAGAAGAAGAGGAAGGCTATGGAGGCTGAGATGAGGAAGGAGCTTGAGAGACGTAGACAAGAGGAGGAAGAGAGGGAGAAGAAGGAGCGAGAGGAGCGAGAAAGAGAACATTCTGATTCTAGGATAAATATTTCGGGCGAGGAAGCTTGGAGAAGGCGCGCGGCGAAGAGTGGGGCAATACCAAGATCGCCATCTCCACCAAGTAGCGTAGACGGCTTCAGCATTGGAAAGTCGGAGACTGGGGGGTTGGGAGTTGGTGCTGGTGGGCAGATGACAGCGGCACAAAGGATGATGGCTAAGATGGGGTGGAAAGAGGGGCAAGGGCTTGGGAAGCAAGAACAAGGAATTACCACTCCTCTGATGGCAAAAAAGACAGATTTGCGTGCTGGAGTAATTGTGAACGCTAATGATACGAAATCAGAGAAGAAAGTGAAGAGTGTTAACTTCAACGGGCTACCTACTCGGGTTCTTCTTCTCAGAAACATGGTTGGCCCGGGTGAGGTAGATGATGAGCTAGAAGAGGAAGTAGGATCAGAGTGTGCAAAGTATGGAACAGTAACACGAGTTCTAATATTCGAGATTACAGAACCCAATTTTCCAGTGGACGAGGCTGTTCGAATTTTTGTGCAGTTTGAAAGATCAGAAGAAACGACAAAGGCTTTGGTTGATCTTGATGGTCGGTACTTTGGTGGAAGAGTGGTTCGAGCTACATTTTACGACGAGGAAAGGTTCAGTAAGAATGAATTAGCTCCAATGCCAGGAGAAGTCCCTGGATTTACATGA

Protein sequence

MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAATSTHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAMEAEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPSSVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNELAPMPGEVPGFT*

Homology

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BLAST of CsaV3_6G052300 vs. NCBI nr
Match: XP_004134609.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KGN49456.1 hypothetical protein Csa_003083 [Cucumis sativus])

HSP 1 Score: 697.2 bits (1798), Expect = 7.7e-197
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

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BLAST of CsaV3_6G052300 vs. NCBI nr
Match: XP_008439555.1 (PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis melo])

HSP 1 Score: 689.1 bits (1777), Expect = 2.1e-194
Identity = 366/372 (98.39%), Postives = 369/372 (99.19%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ+KIKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQNKIKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
            THPK SVSTQVEASQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  LTHPKASVSTQVEASQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKER+EREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKERDEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKAKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

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BLAST of CsaV3_6G052300 vs. NCBI nr
Match: XP_038882071.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida])

HSP 1 Score: 682.2 bits (1759), Expect = 2.6e-192
Identity = 363/372 (97.58%), Postives = 366/372 (98.39%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK SVS  VE SQPILAE I QPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEVIAQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+SDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDE+RFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEDRFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

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BLAST of CsaV3_6G052300 vs. NCBI nr
Match: XP_022146691.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia])

HSP 1 Score: 674.9 bits (1740), Expect = 4.1e-190
Identity = 357/372 (95.97%), Postives = 365/372 (98.12%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S S  VE SQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERER++SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

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BLAST of CsaV3_6G052300 vs. NCBI nr
Match: XP_023003194.1 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 671.4 bits (1731), Expect = 4.5e-189
Identity = 356/372 (95.70%), Postives = 363/372 (97.58%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSK+K AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK SVS  VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

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BLAST of CsaV3_6G052300 vs. ExPASy Swiss-Prot
Match: P42698 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DRT111 PE=1 SV=2)

HSP 1 Score: 498.4 bits (1282), Expect = 6.9e-140
Identity = 282/389 (72.49%), Postives = 318/389 (81.75%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPP+  E+    +S+VWSSSTKMAPPTLRKP +   PQT+LR  +K K   
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV 60

Query: 61  STHPKVSVSTQVEASQPILAEA-----ITQPALVAVTSTVVEEYDPARPNDYEEYRVEKK 120
           S   K    +   +SQ +L  A       QPALV VTS+V+EEYDPARPNDYEEY+ EKK
Sbjct: 61  SAPYKPPPPS--NSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKK 120

Query: 121 RKAMEAEMRKELERRRQEEEEREKKERE----EREREHSD-SRINISGEEAWRRRAAK-- 180
           RKA EAEM++E+++RRQE+EER+K+ERE    ERER++SD SR+NISGEEAW+RRAA   
Sbjct: 121 RKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSG 180

Query: 181 --SGAIPRSPSPPSSVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQ 240
             SG   RS SPP +VDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGK EQ
Sbjct: 181 GGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKSEQ 240

Query: 241 GITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGLPTRVLLLRNMVGPGEVDD 300
           GITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG PTRVLLLRNMVGPG+VDD
Sbjct: 241 GITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQVDD 300

Query: 301 ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFG 360
           ELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGRYFG
Sbjct: 301 ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFG 360

Query: 361 GRVVRATFYDEERFSKNELAPMPGEVPGF 372
           GR VRATFYDEE+FSKNELAP+PGE+PG+
Sbjct: 361 GRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy Swiss-Prot
Match: Q96I25 (Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.4e-36
Identity = 148/412 (35.92%), Postives = 206/412 (50.00%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAATSTHP 64
           LY DL       E   + +  WS + K+    L+      A  T  +SQ + K +T   P
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKK---AALTQAKSQ-RTKQSTVLAP 62

Query: 65  KV-------SVSTQVEASQPILAEAITQP-----ALVAVTSTVVEEYDPARPNDYEEYRV 124
            +       S   Q+  + P +A  +  P     +   V   + +EYDP  PNDYE+   
Sbjct: 63  VIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV-- 122

Query: 125 EKKRKAMEAEMRKELERRRQ-EEEEREKKEREE----REREHSDSRINISGEEAWRRRAA 184
             KR+  E + ++ELER+++ EE E+ +K+R E      R   DS  +   E   R+R+ 
Sbjct: 123 -VKRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDEDEDYERERRKRSM 182

Query: 185 KSGAI------------------------PRSPS-----PPSSVDGFSIGKSETG---GL 244
              AI                        PRS S     PP   +     +S TG     
Sbjct: 183 GGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEQDRPRSPTGPSNSF 242

Query: 245 GVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDTKSEKK 304
               GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T+ +  
Sbjct: 243 LANMGG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKDAS 302

Query: 305 VKS-----VNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPN 363
            KS           PT+V+LLRNMVG GEVD++LE E   EC KYG V + +IFEI  P 
Sbjct: 303 KKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI--PG 362

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy Swiss-Prot
Match: Q8JZX4 (Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.6e-35
Identity = 149/416 (35.82%), Postives = 209/416 (50.24%), Query Frame = 0


Query: 5   LYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAATSTHP 64
           LY DL       E   + +  WS + K+    L+      A  T  +SQ + K +T   P
Sbjct: 3   LYDDL-----GVETSDSKTEGWSKNFKLLQSQLQVKK---AALTQAKSQ-RTKQSTVLAP 62

Query: 65  KV-------SVSTQVEASQPILAEAITQP-----ALVAVTSTVVEEYDPARPNDYEEYRV 124
            +       S   Q+  + P +A  +  P     +   V   + +EYDP  PNDYE+   
Sbjct: 63  VIDLKRGGSSDDRQIADTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKV-- 122

Query: 125 EKKRKAMEAEMRKELERRRQ-EEEEREKKEREE----REREHSDSRINISGEEAWRRRAA 184
             KR+  E + ++ELER+++ EE E+ +K+R E      R   DS  +   E   R+R+ 
Sbjct: 123 -VKRQREERQRQRELERQKEIEEREKRRKDRHEASGFSRRPDPDSDEDEDYERERRKRSM 182

Query: 185 KSGAI------------------------PRSPS-----PPSSVDGFSIGKSETG---GL 244
              AI                        PRS S     PP   +     +S TG     
Sbjct: 183 GGAAIAPPTSLVEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSF 242

Query: 245 GVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLRAGVIVNANDT---KS 304
               GG  T A ++M K G++EGQGLGK EQG++T L  +KT  R G I+  + T   ++
Sbjct: 243 LANMGG--TVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKIIVGDATEKGEA 302

Query: 305 EKKVKSVNFNGL------PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEI 363
           +   K  + N L      PT+V+LLRNMVG GEVD++LE E   EC KYG V + +IFEI
Sbjct: 303 QDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEI 362

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy Swiss-Prot
Match: Q2HJG2 (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.7e-18
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 268 VLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERS 327
           V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  +
Sbjct: 434 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA 493

Query: 328 EETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA 363
            ET KA+ DL+GR+F GR V A  YD+ERF  ++L+
Sbjct: 494 SETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLS 529

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy Swiss-Prot
Match: Q3UEB3 (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 6.7e-18
Identity = 45/96 (46.88%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 268 VLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITE-PNFPVDEAVRIFVQFERS 327
           V++LRNMV P ++DD+LE EV  EC K+G V RV+I++  +      +  V+IFV+F  +
Sbjct: 468 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA 527

Query: 328 EETTKALVDLDGRYFGGRVVRATFYDEERFSKNELA 363
            ET KA+  L+GR+FGGR V A  YD+ERF  ++L+
Sbjct: 528 SETHKAIQALNGRWFGGRKVVAEVYDQERFDNSDLS 563

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy TrEMBL
Match: A0A0A0KP45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1)

HSP 1 Score: 697.2 bits (1798), Expect = 3.7e-197
Identity = 372/372 (100.00%), Postives = 372/372 (100.00%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy TrEMBL
Match: A0A1S3AYL8 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484318 PE=4 SV=1)

HSP 1 Score: 689.1 bits (1777), Expect = 1.0e-194
Identity = 366/372 (98.39%), Postives = 369/372 (99.19%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQ+KIKAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQNKIKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
            THPK SVSTQVEASQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  LTHPKASVSTQVEASQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKER+EREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKERDEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKK KSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKAKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy TrEMBL
Match: A0A6J1D044 (DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015835 PE=4 SV=1)

HSP 1 Score: 674.9 bits (1740), Expect = 2.0e-190
Identity = 357/372 (95.97%), Postives = 365/372 (98.12%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSK+KAAT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKVKAAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S S  VE SQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYR+EKKRKAME
Sbjct: 61  STHPKASASASVEQSQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRMEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERER++SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREERERDYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGF+IGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 AADGFTIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVNFNG PTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNFNGQPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy TrEMBL
Match: A0A6J1KSL4 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111496883 PE=4 SV=1)

HSP 1 Score: 671.4 bits (1731), Expect = 2.2e-189
Identity = 356/372 (95.70%), Postives = 363/372 (97.58%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSK+K AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK SVS  VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKASVSAPVEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+SDSR+NISGEEAWRRRAAKSGAIPRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAIPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 372

[Close]

BLAST of CsaV3_6G052300 vs. ExPASy TrEMBL
Match: A0A6J1ELY8 (DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433765 PE=4 SV=1)

HSP 1 Score: 662.9 bits (1709), Expect = 7.8e-187
Identity = 353/372 (94.89%), Postives = 361/372 (97.04%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPPSSAEEDKP+NSTVWSSSTKMAPPTLRKPSSVFAP TVLRSQSK+K AT
Sbjct: 1   MLGGLYGDLPPPSSAEEDKPSNSTVWSSSTKMAPPTLRKPSSVFAPPTVLRSQSKVKPAT 60

Query: 61  STHPKVSVSTQVEASQPILAEAITQPALVAVTSTVVEEYDPARPNDYEEYRVEKKRKAME 120
           STHPK S    VE SQPILAEAITQPALVAVTSTV+EEYDPARPNDYEEYRVEKKRKAME
Sbjct: 61  STHPKAS----VEPSQPILAEAITQPALVAVTSTVIEEYDPARPNDYEEYRVEKKRKAME 120

Query: 121 AEMRKELERRRQEEEEREKKEREEREREHSDSRINISGEEAWRRRAAKSGAIPRSPSPPS 180
           AEMRKELERRRQEEEEREKKEREERERE+SDSR+NISGEEAWRRRAAKSGA+PRSPSPPS
Sbjct: 121 AEMRKELERRRQEEEEREKKEREEREREYSDSRLNISGEEAWRRRAAKSGAVPRSPSPPS 180

Query: 181 SVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240
           + DGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR
Sbjct: 181 TGDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDLR 240

Query: 241 AGVIVNANDTKSEKKVKSVNFNGLPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300
           AGVIVNANDTKSEKKVKSVN NGLPTRVL+LRNMVGPGEVDDELEEEVGSECAKYGTVTR
Sbjct: 241 AGVIVNANDTKSEKKVKSVNINGLPTRVLMLRNMVGPGEVDDELEEEVGSECAKYGTVTR 300

Query: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFSKNE 360
           VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF KNE
Sbjct: 301 VLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERFGKNE 360

Query: 361 LAPMPGEVPGFT 373
           LAPMPGEVPGFT
Sbjct: 361 LAPMPGEVPGFT 368

[Close]

BLAST of CsaV3_6G052300 vs. TAIR 10
Match: AT1G30480.1 (D111/G-patch domain-containing protein )

HSP 1 Score: 498.4 bits (1282), Expect = 4.9e-141
Identity = 282/389 (72.49%), Postives = 318/389 (81.75%), Query Frame = 0


Query: 1   MLGGLYGDLPPPSSAEEDKPTNSTVWSSSTKMAPPTLRKPSSVFAPQTVLRSQSKIKAAT 60
           MLGGLYGDLPPP+  E+    +S+VWSSSTKMAPPTLRKP +   PQT+LR  +K K   
Sbjct: 1   MLGGLYGDLPPPTDDEKPSGNSSSVWSSSTKMAPPTLRKPPAFAPPQTILRPLNKPKPIV 60

Query: 61  STHPKVSVSTQVEASQPILAEA-----ITQPALVAVTSTVVEEYDPARPNDYEEYRVEKK 120
           S   K    +   +SQ +L  A       QPALV VTS+V+EEYDPARPNDYEEY+ EKK
Sbjct: 61  SAPYKPPPPS--NSSQSVLIPANESAPSHQPALVGVTSSVIEEYDPARPNDYEEYKREKK 120

Query: 121 RKAMEAEMRKELERRRQEEEEREKKERE----EREREHSD-SRINISGEEAWRRRAAK-- 180
           RKA EAEM++E+++RRQE+EER+K+ERE    ERER++SD SR+NISGEEAW+RRAA   
Sbjct: 121 RKATEAEMKREMDKRRQEDEERDKREREEREKERERDNSDPSRLNISGEEAWKRRAAMSG 180

Query: 181 --SGAIPRSPSPPSSVDGFSIGKSETGGLGVGAGGQMTAAQRMMAKMGWKEGQGLGKQEQ 240
             SG   RS SPP +VDGFSIGKSET GLGVGAGGQMTAAQRMMAKMGWK+GQGLGK EQ
Sbjct: 181 GGSGGKGRSSSPPGNVDGFSIGKSETSGLGVGAGGQMTAAQRMMAKMGWKQGQGLGKSEQ 240

Query: 241 GITTPLMAKKTDLRAGVIVNANDTKS----EKKVKSVNFNGLPTRVLLLRNMVGPGEVDD 300
           GITTPLMAKKTD RAGVIVNA++ KS    +K VKSVN NG PTRVLLLRNMVGPG+VDD
Sbjct: 241 GITTPLMAKKTDRRAGVIVNASENKSSSAEKKVVKSVNINGEPTRVLLLRNMVGPGQVDD 300

Query: 301 ELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAVRIFVQFERSEETTKALVDLDGRYFG 360
           ELE+EVG EC KYGTVTRVLIFEITEPNFPV EAVRIFVQF R EETTKALVDLDGRYFG
Sbjct: 301 ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFG 360

Query: 361 GRVVRATFYDEERFSKNELAPMPGEVPGF 372
           GR VRATFYDEE+FSKNELAP+PGE+PG+
Sbjct: 361 GRTVRATFYDEEKFSKNELAPVPGEIPGY 387

[Close]

BLAST of CsaV3_6G052300 vs. TAIR 10
Match: AT2G16940.1 (Splicing factor, CC1-like )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-07
Identity = 26/99 (26.26%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 263 GLPTRVLLLRNMVGPG-----EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAV 322
           G+P+  LLL+NM  P      + D++++E+V  EC+K+G +  + + +        +   
Sbjct: 461 GVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK--------NSVG 520

Query: 323 RIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF 357
            ++++FE ++    A   L GR+F G+++ AT+   E +
Sbjct: 521 FVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 551

[Close]

BLAST of CsaV3_6G052300 vs. TAIR 10
Match: AT2G16940.3 (Splicing factor, CC1-like )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-07
Identity = 26/99 (26.26%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 263 GLPTRVLLLRNMVGPG-----EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAV 322
           G+P+  LLL+NM  P      + D++++E+V  EC+K+G +  + + +        +   
Sbjct: 499 GVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK--------NSVG 558

Query: 323 RIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF 357
            ++++FE ++    A   L GR+F G+++ AT+   E +
Sbjct: 559 FVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 589

[Close]

BLAST of CsaV3_6G052300 vs. TAIR 10
Match: AT2G16940.2 (Splicing factor, CC1-like )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-07
Identity = 26/99 (26.26%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 263 GLPTRVLLLRNMVGPG-----EVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPVDEAV 322
           G+P+  LLL+NM  P      + D++++E+V  EC+K+G +  + + +        +   
Sbjct: 510 GVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDK--------NSVG 569

Query: 323 RIFVQFERSEETTKALVDLDGRYFGGRVVRATFYDEERF 357
            ++++FE ++    A   L GR+F G+++ AT+   E +
Sbjct: 570 FVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAY 600

The following BLAST results are available for this feature:

BLAST of CsaV3_6G052300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134609.1	7.7e-197	100.00	DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis sativus] >KG...	[more]
XP_008439555.1	2.1e-194	98.39	PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic [Cucumis m...	[more]
XP_038882071.1	2.6e-192	97.58	DNA-damage-repair/toleration protein DRT111, chloroplastic [Benincasa hispida]	[more]
XP_022146691.1	4.1e-190	95.97	DNA-damage-repair/toleration protein DRT111, chloroplastic [Momordica charantia]	[more]
XP_023003194.1	4.5e-189	95.70	DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Cucurbita maxim...	[more]

BLAST of CsaV3_6G052300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42698	6.9e-140	72.49	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thalia...	[more]
Q96I25	5.4e-36	35.92	Splicing factor 45 OS=Homo sapiens OX=9606 GN=RBM17 PE=1 SV=1	[more]
Q8JZX4	4.6e-35	35.82	Splicing factor 45 OS=Mus musculus OX=10090 GN=Rbm17 PE=1 SV=1	[more]
Q2HJG2	6.7e-18	46.88	Poly(U)-binding-splicing factor PUF60 OS=Bos taurus OX=9913 GN=PUF60 PE=2 SV=1	[more]
Q3UEB3	6.7e-18	46.88	Poly(U)-binding-splicing factor PUF60 OS=Mus musculus OX=10090 GN=Puf60 PE=1 SV=...	[more]

BLAST of CsaV3_6G052300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KP45	3.7e-197	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G525420 PE=4 SV=1	[more]
A0A1S3AYL8	1.0e-194	98.39	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Cucumis melo OX=36...	[more]
A0A6J1D044	2.0e-190	95.97	DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Momordica charanti...	[more]
A0A6J1KSL4	2.2e-189	95.70	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita max...	[more]
A0A6J1ELY8	7.8e-187	94.89	DNA-damage-repair/toleration protein DRT111, chloroplastic-like OS=Cucurbita mos...	[more]

BLAST of CsaV3_6G052300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30480.1	4.9e-141	72.49	D111/G-patch domain-containing protein	[more]
AT2G16940.1	2.4e-07	26.26	Splicing factor, CC1-like	[more]
AT2G16940.3	2.4e-07	26.26	Splicing factor, CC1-like	[more]
AT2G16940.2	2.4e-07	26.26	Splicing factor, CC1-like	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 116..153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..44
IPR000467	G-patch domain	SMART	SM00443	G-patch_5	coord: 200..246 e-value: 1.4E-15 score: 67.8
IPR000467	G-patch domain	PFAM	PF01585	G-patch	coord: 205..244 e-value: 8.9E-17 score: 60.7
IPR000467	G-patch domain	PROSITE	PS50174	G_PATCH	coord: 202..248 score: 15.451051
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 268..349 e-value: 6.1E-28 score: 108.8
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 263..361 e-value: 4.4E-26 score: 92.9
IPR040052	Splicing factor 45	PIRSF	PIRSF031066	SPF45	coord: 3..368 e-value: 9.4E-122 score: 405.2
IPR040052	Splicing factor 45	PANTHER	PTHR13288	SPLICING FACTOR 45 SPF45	coord: 1..363
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 267..353 score: 9.950859
IPR034653	SPF45, RNA recognition motif	CDD	cd12647	RRM_UHM_SPF45	coord: 265..361 e-value: 3.71019E-50 score: 161.671
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 269..355

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G052300.1	CsaV3_6G052300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
molecular_function	GO:0003676	nucleic acid binding