CsaV3_6G052090 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G052090
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 30325898 .. 30326077 (-)
RNA-Seq Expression	CsaV3_6G052090
Synteny	CsaV3_6G052090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCCATCAACAGGGCTGGGCAACACCAAGGAATCACCGAAGATCAAGTAAATGCGGGAAAAACAGTCTGGGTGGAGAAATGTGACCTGAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAAGCGGAAAGGACCGAGAACGAAGCTATCATGTTAGATTGA

mRNA sequence

ATGAAACCCATCAACAGGGCTGGGCAACACCAAGGAATCACCGAAGATCAAGTAAATGCGGGAAAAACAGTCTGGGTGGAGAAATGTGACCTGAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAAGCGGAAAGGACCGAGAACGAAGCTATCATGTTAGATTGA

Coding sequence (CDS)

ATGAAACCCATCAACAGGGCTGGGCAACACCAAGGAATCACCGAAGATCAAGTAAATGCGGGAAAAACAGTCTGGGTGGAGAAATGTGACCTGAAATTTAGATTGAATACACAAATGGAAGGTCCCATAAACATCAACGAAGCGGAAAGGACCGAGAACGAAGCTATCATGTTAGATTGA

Protein sequence

MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD*

Homology

[Close]

BLAST of CsaV3_6G052090 vs. NCBI nr
Match: KGN49433.1 (hypothetical protein Csa_004453 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 8.7e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 60
          MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

[Close]

BLAST of CsaV3_6G052090 vs. NCBI nr
Match: KAA0052515.1 (hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK13310.1 hypothetical protein E5676_scaffold255G009330 [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 1.9e-20
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 60
          MKPIN AGQHQ I EDQVNAG TVW+EKCDLKFRLNTQMEGPININE ERTENEAIMLD
Sbjct: 1  MKPINGAGQHQEIDEDQVNAG-TVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

[Close]

BLAST of CsaV3_6G052090 vs. ExPASy TrEMBL
Match: A0A0A0KIR4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.2e-26
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 60
          MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD
Sbjct: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 59

[Close]

BLAST of CsaV3_6G052090 vs. ExPASy TrEMBL
Match: A0A5D3CPG0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009330 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 9.1e-21
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 1  MKPINRAGQHQGITEDQVNAGKTVWVEKCDLKFRLNTQMEGPININEAERTENEAIMLD 60
          MKPIN AGQHQ I EDQVNAG TVW+EKCDLKFRLNTQMEGPININE ERTENEAIMLD
Sbjct: 1  MKPINGAGQHQEIDEDQVNAG-TVWLEKCDLKFRLNTQMEGPININEPERTENEAIMLD 58

The following BLAST results are available for this feature:

BLAST of CsaV3_6G052090 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49433.1	8.7e-26	100.00	hypothetical protein Csa_004453 [Cucumis sativus]	[more]
KAA0052515.1	1.9e-20	89.83	hypothetical protein E6C27_scaffold120G001150 [Cucumis melo var. makuwa] >TYK133...	[more]

BLAST of CsaV3_6G052090 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G052090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIR4	4.2e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524700 PE=4 SV=1	[more]
A0A5D3CPG0	9.1e-21	89.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_6G052090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G052090.1	CsaV3_6G052090.1	mRNA