CsaV3_6G051710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G051710
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 30071975 .. 30073173 (+)
RNA-Seq ExpressionCsaV3_6G051710
SyntenyCsaV3_6G051710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTCTAATTAACACCAGTTATGGAATAATTTTTTCATCCAATAACCTAATACACTAACTTTAATTAGAACCTATATAGTTTGACATTATTTATTTTTGTTTAGGGTATATGTATGTATATATATAGAACATGGTTGACCCATTAAACAGGGGACCAAATTACAACATTAAACTCATTTCTCAACAACAAATAATATAAATTAGAAACCCCCATCCATCTCTACATATACATCATTCATTATATATCCACACCTCCCTCGAATAACATCTCCTCTTTCTTTCTCATTCTCCATTAAAAATTTGGCTCTCTCGTACCATTTTTGCACACAAAATGAAACTTACTCATCACCGTAACATCCAAATTAAAACCCTTTTGATTTCTCTTTCTCAAAAGTGAAAAATGGGTTTCAAGATTCCCTCTTCATTCTCATCACCAAATTACCTTTGTTTCTTTCAAATCTCTCTCTCTCTTATTCTCTTCTTCCTCCTAACTCCCACCACCTCTTCCTTTAAACCCCTTCCCGGCCATGAACCAAGCAACGTCCGCCACCGTACCACCGTTGTCCATGGCAGCGCAATCACCACACTACGGCGAGAAGTAGATCATCCTCATCATCATCATCATGAATACAGAAGCAACAAATTAGAAATGGAGATCAAAATTAACAAGATAAGCAAGAAGATGATCAAAAGGAAGGTTGTAGTACTCCCGGGCGGGTTTAAAAGCAGTAATCATAAAAATAAAAACGATAAAGGAAGTGCTTTCTCTGCAATGCTTCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCCCCTTGTCATAACGAAGACCCTCAATCTTCATCTCTTGCTTTTTACTGCCATCTTGATCGCCCTTGATTATTAATCTGCCTCTTTTATCCATTTGGGCATTCTTTTTCAGGTGGGTTTCAGCTAAGTTTCTTGCTTTTGTTTTTTTATTCTATTATAAAATCTCCCCCTTCTTGAAATTGTGACAAATTAAACAGTGTAATATGGTCTCCATATATAAATATATAGAAGAAAAAAAGGAAAACCATTACTCTTCTCTTCTTCTCTCTCTTTTTGTATATTATTTAGAATGTAATTGTTTACAACATAGAAATTTAGGAATTCGAAAAGTTATTTTCTTGGATTAACTATAAGCTGTCTCTCCAGATTTGTAGATAAAAACAAGTTATTTA

mRNA sequence

ATGGGTTTCAAGATTCCCTCTTCATTCTCATCACCAAATTACCTTTGTTTCTTTCAAATCTCTCTCTCTCTTATTCTCTTCTTCCTCCTAACTCCCACCACCTCTTCCTTTAAACCCCTTCCCGGCCATGAACCAAGCAACGTCCGCCACCGTACCACCGTTGTCCATGGCAGCGCAATCACCACACTACGGCGAGAAGTAGATCATCCTCATCATCATCATCATGAATACAGAAGCAACAAATTAGAAATGGAGATCAAAATTAACAAGATAAGCAAGAAGATGATCAAAAGGAAGGTTGTAGTACTCCCGGGCGGGTTTAAAAGCAGTAATCATAAAAATAAAAACGATAAAGGAAGTGCTTTCTCTGCAATGCTTCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCCCCTTGTCATAACGAAGACCCTCAATCTTCATCTCTTGCTTTTTACTGCCATCTTGATCGCCCTTGA

Coding sequence (CDS)

ATGGGTTTCAAGATTCCCTCTTCATTCTCATCACCAAATTACCTTTGTTTCTTTCAAATCTCTCTCTCTCTTATTCTCTTCTTCCTCCTAACTCCCACCACCTCTTCCTTTAAACCCCTTCCCGGCCATGAACCAAGCAACGTCCGCCACCGTACCACCGTTGTCCATGGCAGCGCAATCACCACACTACGGCGAGAAGTAGATCATCCTCATCATCATCATCATGAATACAGAAGCAACAAATTAGAAATGGAGATCAAAATTAACAAGATAAGCAAGAAGATGATCAAAAGGAAGGTTGTAGTACTCCCGGGCGGGTTTAAAAGCAGTAATCATAAAAATAAAAACGATAAAGGAAGTGCTTTCTCTGCAATGCTTCCAAAGGGATTTGTTCCTCCTTCTGGTTCTTCCCCTTGTCATAACGAAGACCCTCAATCTTCATCTCTTGCTTTTTACTGCCATCTTGATCGCCCTTGA

Protein sequence

MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP*
Homology
BLAST of CsaV3_6G051710 vs. NCBI nr
Match: KGN49393.1 (hypothetical protein Csa_004373 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 9.9e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60
           MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60

Query: 61  TTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGS 120
           TTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGS
Sbjct: 61  TTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGS 120

Query: 121 AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 159
           AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP
Sbjct: 121 AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 158

BLAST of CsaV3_6G051710 vs. NCBI nr
Match: KAA0052545.1 (hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK13280.1 hypothetical protein E5676_scaffold255G008990 [Cucumis melo var. makuwa])

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-61
Identity = 136/163 (83.44%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MGFKIPSSF---SSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHR-TTVVH 60
           MGFKIPSSF   SSPNYLCFFQISLSLILFFL+T TTSSFKPLP HE +NV HR T VVH
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSSFKPLP-HESNNVHHRATAVVH 60

Query: 61  GSA-ITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120
           GSA ITTL REVD  HHHH EYRS KLEMEIKINKISKKM K+ VV  PGGFKSSN+  K
Sbjct: 61  GSAMITTLGREVD--HHHHREYRSKKLEMEIKINKISKKMKKKGVV--PGGFKSSNNNKK 120

Query: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 159
           NDKGSAFS MLPKGFVPPSGSSPCHNE+PQSSSLAFYCHLDRP
Sbjct: 121 NDKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHLDRP 158

BLAST of CsaV3_6G051710 vs. NCBI nr
Match: KAG6581427.1 (hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-25
Identity = 81/160 (50.62%), Postives = 98/160 (61.25%), Query Frame = 0

Query: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60
           MGFKI S         FFQIS+SLILFFLL  ++SS K LP      +    T +HG A 
Sbjct: 1   MGFKIQSP--------FFQISISLILFFLLISSSSSAKLLPSRSDVQLHRHRTTLHGGAP 60

Query: 61  TT-----LRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120
           TT      +REVD       +Y++NKL+M IK NK  K   K+K        +  ++ N 
Sbjct: 61  TTPFLLNPQREVD-------QYKANKLQMAIK-NKSKKN--KKKTTA-----RFESNGNN 120

Query: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 156
           N+KG+AFS MLPKGFVPPSGSSPCHN+ PQSSS AFYCHL
Sbjct: 121 NNKGTAFSVMLPKGFVPPSGSSPCHNQSPQSSSPAFYCHL 137

BLAST of CsaV3_6G051710 vs. NCBI nr
Match: KAG7026467.1 (hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108.2 bits (269), Expect = 6.5e-20
Identity = 73/158 (46.20%), Postives = 90/158 (56.96%), Query Frame = 0

Query: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEP---SNVRHRTTVVHG 60
           MGFKI  S  SPNYL +  ISLSLILFFLL  ++SS +PLP   P   ++ RHRTT+  G
Sbjct: 1   MGFKIQPS-PSPNYLYYLSISLSLILFFLLI-SSSSAQPLPLRRPNLAAHHRHRTTLHVG 60

Query: 61  SAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKND 120
           +  TT              + + KL+ME                        +N K K +
Sbjct: 61  APTTT--------------FTAKKLQME------------------------TNKKKKKN 116

Query: 121 KGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 156
           K +AFSAMLPKGFVPPSGSSPCHNE+P+   +AFYCHL
Sbjct: 121 KATAFSAMLPKGFVPPSGSSPCHNENPE--FVAFYCHL 116

BLAST of CsaV3_6G051710 vs. NCBI nr
Match: KAG6594469.1 (hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 2.1e-18
Identity = 72/158 (45.57%), Postives = 88/158 (55.70%), Query Frame = 0

Query: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHE---PSNVRHRTTVVHG 60
           MGFKI  S  SPNYL +  ISLSLILFFLL  + SS +PLP       ++ RHRTT+  G
Sbjct: 1   MGFKIQPS-PSPNYLYYLSISLSLILFFLLI-SFSSAQPLPLRRLNLAAHHRHRTTLHVG 60

Query: 61  SAITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKND 120
           +  TT              + + KL+ME                        +N K K +
Sbjct: 61  APTTT--------------FTAKKLQME------------------------TNKKKKKN 116

Query: 121 KGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHL 156
           K +AFSAMLPKGFVPPSGSSPCHNE+P+   +AFYCHL
Sbjct: 121 KTTAFSAMLPKGFVPPSGSSPCHNENPE--FVAFYCHL 116

BLAST of CsaV3_6G051710 vs. ExPASy TrEMBL
Match: A0A0A0KIK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 4.8e-85
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60
           MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI
Sbjct: 1   MGFKIPSSFSSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAI 60

Query: 61  TTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGS 120
           TTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGS
Sbjct: 61  TTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGS 120

Query: 121 AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 159
           AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP
Sbjct: 121 AFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 158

BLAST of CsaV3_6G051710 vs. ExPASy TrEMBL
Match: A0A5A7UFQ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008990 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 9.7e-62
Identity = 136/163 (83.44%), Postives = 141/163 (86.50%), Query Frame = 0

Query: 1   MGFKIPSSF---SSPNYLCFFQISLSLILFFLLTPTTSSFKPLPGHEPSNVRHR-TTVVH 60
           MGFKIPSSF   SSPNYLCFFQISLSLILFFL+T TTSSFKPLP HE +NV HR T VVH
Sbjct: 1   MGFKIPSSFSPYSSPNYLCFFQISLSLILFFLITSTTSSFKPLP-HESNNVHHRATAVVH 60

Query: 61  GSA-ITTLRREVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNK 120
           GSA ITTL REVD  HHHH EYRS KLEMEIKINKISKKM K+ VV  PGGFKSSN+  K
Sbjct: 61  GSAMITTLGREVD--HHHHREYRSKKLEMEIKINKISKKMKKKGVV--PGGFKSSNNNKK 120

Query: 121 NDKGSAFSAMLPKGFVPPSGSSPCHNEDPQSSSLAFYCHLDRP 159
           NDKGSAFS MLPKGFVPPSGSSPCHNE+PQSSSLAFYCHLDRP
Sbjct: 121 NDKGSAFSVMLPKGFVPPSGSSPCHNENPQSSSLAFYCHLDRP 158

BLAST of CsaV3_6G051710 vs. ExPASy TrEMBL
Match: A0A444WWS8 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100459 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.6e-09
Identity = 49/140 (35.00%), Postives = 76/140 (54.29%), Query Frame = 0

Query: 24  LILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAITTLRREVDHPHHHHHEYRSNKLE 83
           +IL  L + ++SSF     H P+     ++ +  SA T L +     +H     ++NK +
Sbjct: 10  IILITLHSSSSSSFN--NNHYPNPSSSSSSPILSSA-TALSQ-----YHQVFFLKNNKKD 69

Query: 84  MEIKINKISKKMIKRKVVVLPGGFKSSNHKNKN--------DKGSAFSAMLPKGFVPPSG 143
            +  + K  ++++KR   ++      +N+KNKN            AFS MLPKGFVPPSG
Sbjct: 70  DDGDMIKKRRRIVKRNYKMMKKKRNKNNNKNKNKNSLSSSSSSSRAFSVMLPKGFVPPSG 129

Query: 144 SSPCHNEDPQSSSLAFYCHL 156
           SSPCHN+ P S+  +F+CHL
Sbjct: 130 SSPCHNDQPNSAYSSFHCHL 141

BLAST of CsaV3_6G051710 vs. ExPASy TrEMBL
Match: K7M133 (Uncharacterized protein OS=Glycine max OX=3847 GN=102664871 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 49/142 (34.51%), Postives = 68/142 (47.89%), Query Frame = 0

Query: 21  SLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAITTLRREVDHPHHHHHEYRSN 80
           +++L + FLL+ T SS         S+  H +T    +  ++      H H H   Y  N
Sbjct: 13  TITLFILFLLSYTASS---------SSSSHSSTQEIQNPSSSSTTNPTHYHQHQVFYLKN 72

Query: 81  -------KLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGSAFSAMLPKGFVPP 140
                  K E   K  +I +   K  +++        N +   D   AFS MLPKGFVPP
Sbjct: 73  KDSTTLSKQEQRFKKRRIKRNTSKNMMMMKHRKKMVKNLQQTRDSSRAFSVMLPKGFVPP 132

Query: 141 SGSSPCHNEDPQSSSLAFYCHL 156
           SGSSPCHN+ P S S +F+CHL
Sbjct: 133 SGSSPCHNDQPNSVS-SFHCHL 144

BLAST of CsaV3_6G051710 vs. ExPASy TrEMBL
Match: A0A445I8K3 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_031414 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.6e-08
Identity = 49/142 (34.51%), Postives = 68/142 (47.89%), Query Frame = 0

Query: 21  SLSLILFFLLTPTTSSFKPLPGHEPSNVRHRTTVVHGSAITTLRREVDHPHHHHHEYRSN 80
           +++L + FLL+ T SS         S+  H +T    +  ++      H H H   Y  N
Sbjct: 13  TITLFILFLLSYTASS--------SSSSSHSSTQEIQNPSSSSTTNPTHYHQHQVFYLKN 72

Query: 81  -------KLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGSAFSAMLPKGFVPP 140
                  K E   K  +I +   K  +++        N +   D   AFS MLPKGFVPP
Sbjct: 73  KDSTTLSKQEQRFKKRRIKRNTSKNMMMMKHRKKMVKNLQQTRDSSRAFSVMLPKGFVPP 132

Query: 141 SGSSPCHNEDPQSSSLAFYCHL 156
           SGSSPCHN+ P S S +F+CHL
Sbjct: 133 SGSSPCHNDQPNSVS-SFHCHL 145

BLAST of CsaV3_6G051710 vs. TAIR 10
Match: AT4G18335.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 4.7e-08
Identity = 42/147 (28.57%), Postives = 69/147 (46.94%), Query Frame = 0

Query: 18  FQISLSLILFFLLTPTTSSFKP-------------LPGHEPSNVRHRTTVVHGSAITTLR 77
           F +SL L L FL++P++SS                L G+E     H+   +  +    L 
Sbjct: 15  FIVSLILTLVFLISPSSSSSNQETRVSSTQKTEAYLNGYESP---HQLVYIKKTTPFILN 74

Query: 78  REVDHPHHHHHEYRSNKLEMEIKINKISKKMIKRKVVVLPGGFKSSNHKNKNDKGSAFSA 137
           + +   +H    Y +++     +     ++ +  +        K +N  N+  +   FS 
Sbjct: 75  QRLQRDNHRRRRY-NHQYYYYYRHTLRHRRGLHHRAGYFKMMAKKNNGLNRPVRQDTFSV 134

Query: 138 MLPKGFVPPSGSSPCHNEDPQSSSLAF 152
           MLPKGFVPPSGSSPCHN++P S++  F
Sbjct: 135 MLPKGFVPPSGSSPCHNQNPNSATTLF 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49393.19.9e-85100.00hypothetical protein Csa_004373 [Cucumis sativus][more]
KAA0052545.12.0e-6183.44hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa] >TYK132... [more]
KAG6581427.12.3e-2550.63hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026467.16.5e-2046.20hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6594469.12.1e-1845.57hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIK14.8e-85100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G523350 PE=4 SV=1[more]
A0A5A7UFQ99.7e-6283.44Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A444WWS85.6e-0935.00Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B10g100459 PE=4 SV=1[more]
K7M1333.6e-0834.51Uncharacterized protein OS=Glycine max OX=3847 GN=102664871 PE=4 SV=1[more]
A0A445I8K33.6e-0834.51Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_031414 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G18335.14.7e-0828.57unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G051710.1CsaV3_6G051710.1mRNA