CsaV3_6G051600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G051600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 30016914 .. 30017876 (+)
RNA-Seq Expression	CsaV3_6G051600
Synteny	CsaV3_6G051600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAACTCTTCCAAATCCCCCCCGCGCACCCAATTCATTATTTAGGCATTTTCCTCACCATTTTCCTTTTTCTTTAGTATTGAACAGTGTTTAAAATATTGATATTGACTCGTAAGCCTCAAGCAAATGCCTCAACCTCCCACTTCCTCCTCTGTATAAATAAACAACCGTATTCAAACCGAGTTGATACCGAGTTCAAGAGAGAGAGAATCAGAAAGAGAGATTTTAGAGAGAGAACGGATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGATTATTCGATATGAAACTAACCGAATTCTGTATGTATTTGTTAATTTGTTATAAAAATTTCCTTCCTCTTCAGTTTTTTTTTTCTCTTCGAGTCGTTATCAATTAATTCTCCTTTTGAATTGTGTTGATCTCTGTGGCTTTGAATATCTGTGACGACTGACGAAGTACCCATTAATCAATCAAGCAAAACTCTTGAGTGTTTTCGAATAGAATTCATTGGTTATAACATTGCGTTGAATATAATTTGGAAAGGGTTTAGAAGATTTTGAGTATAATTTTTCATGAGATGATCAGCGTGAGAGATAATGAATAAATTAGGTTAGAATAATTTTGATAAGTGAGAAGGCGGAGTTGGTCATCGACGGCGAAGAAGGAAGGGAAGAGTGATTGTGATGGAAGGATTGAATAATCTTTTTTCCAACTGTCTCGAACTATTATTCGAATATTAGAGCCTTTCACGTTTGTGTTTCTCTGGCAATATTCA

mRNA sequence

ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA

Coding sequence (CDS)

ATGGATGATGCAATTGATAGGAAGAAAACAAAGACGATGAAGAAGAGAGTGTTCAGCTTCCAGAGGCTCAGAGATTCCTGGAAGTGGAAATTTCTTAAGAATTTCAAGTGGAAGCGATTGAATCTCCAGATGGGTTTCTTTGATGCTATAATTTTCCGAATCGTTTCTTTGTTTGAGACTGTTGCGTTGGTAGGCATCGCCAGTTTCTTCTTCCTCTGTTGTGGCGGTTGCCGCTTTTGA

Protein sequence

MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFFFLCCGGCRF*

Homology

[Close]

BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KGN49382.1 (hypothetical protein Csa_004198 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 5.6e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 VALVGIASFFFLCCGGCRF 80
          VALVGIASFFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

[Close]

BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KAG7034699.1 (hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.3 bits (334), Expect = 9.5e-28
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTK  K+R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI SLFE 
Sbjct: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 VALVGIASFFFLCCGGCRF 80
          +AL+GIA FFFLCCGGCRF
Sbjct: 61 IALIGIAGFFFLCCGGCRF 77

[Close]

BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KAG6581417.1 (hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 3.9e-21
Identity = 56/70 (80.00%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTK  K+R FS QRLRDSWKWKFLK+FKWKRLNL +GF DAIIFRI SLFE 
Sbjct: 1  MDDAIDRKKTK--KRRAFSIQRLRDSWKWKFLKDFKWKRLNLHIGFLDAIIFRIASLFEA 60

Query: 61 VALVGIASFF 71
          +AL+GIA FF
Sbjct: 61 IALIGIAGFF 68

[Close]

BLAST of CsaV3_6G051600 vs. NCBI nr
Match: ESR62900.1 (hypothetical protein CICLE_v10017350mg [Citrus clementina])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 71 FFFLCCGGCRF 80
          FFFLCC GC F
Sbjct: 75 FFFLCC-GCHF 82

[Close]

BLAST of CsaV3_6G051600 vs. NCBI nr
Match: KDO78130.1 (hypothetical protein CISIN_1g036027mg [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 17 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 76

Query: 71 FFFLCCGGCRF 80
          FFFLCC GC F
Sbjct: 77 FFFLCC-GCHF 84

[Close]

BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A0A0KLX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.7e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60
          MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET
Sbjct: 1  MDDAIDRKKTKTMKKRVFSFQRLRDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFET 60

Query: 61 VALVGIASFFFLCCGGCRF 80
          VALVGIASFFFLCCGGCRF
Sbjct: 61 VALVGIASFFFLCCGGCRF 79

[Close]

BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A067GHI9 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-10
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 17 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 76

Query: 71 FFFLCCGGCRF 80
          FFFLCC GC F
Sbjct: 77 FFFLCC-GCHF 84

[Close]

BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: V4UFE9 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.4e-10
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 0


Query: 11 KTMKKRVFSFQRL--RDSWKWKFLKNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIAS 70
          K + +R   F+RL  R+S +WKFL   KWKRLNLQ+ FFD ++F+IVS+FE V LV  A 
Sbjct: 15 KRLNRRWVLFKRLIKRESLRWKFLG--KWKRLNLQISFFDDVLFKIVSVFEAVVLVATAC 74

Query: 71 FFFLCCGGCRF 80
          FFFLCC GC F
Sbjct: 75 FFFLCC-GCHF 82

[Close]

BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 0


Query: 10 TKTMKKRVFSFQRL-RDSWKWKFLKN-FKWKRLNLQMGFFDAIIFRIVSLFETVALVGIA 69
          + +  KR   F+RL ++SW+WKFL + FKWKRLN+Q+ FFD ++FRI S+ E + LV   
Sbjct: 7  SSSSSKRWVLFKRLIKESWRWKFLGSAFKWKRLNIQLSFFDDVLFRIASVLEAIYLVATL 66

Query: 70 SFFFLCCGGCRF 80
           FF+LCC GC F
Sbjct: 67 CFFYLCC-GCHF 77

[Close]

BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL
Match: A0A7N2LSF8 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 14 KKRVFSFQRLR--DSWKWKFLKN-FKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFF 73
          K R   F+RLR   +W+WKFL + FKWKRLNLQ+ F D ++FRI+S+FE + LV    FF
Sbjct: 5  KNRWIFFKRLRMQTAWRWKFLGSAFKWKRLNLQLSFVDDVLFRILSVFEAIVLVATLCFF 64

Query: 74 FLCCGGCRF 80
          +LCC GC F
Sbjct: 65 YLCC-GCHF 72

[Close]

BLAST of CsaV3_6G051600 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 14 KKRVFSFQRLRDSWKWKFL---KNFKWKRLNLQMGFFDAIIFRIVSLFETVALVGIASFF 73
          K ++  ++  ++  + KFL      KWKRLNL+M F + + +RI+S+ E + LV   +FF
Sbjct: 4  KGKLSIWKTTKERTRLKFLGLGGGLKWKRLNLKMTFLETLRYRIMSIIEAMVLVSKLAFF 63

Query: 74 FLCCGGCRF 80
          FLCC GC+F
Sbjct: 64 FLCC-GCKF 71

The following BLAST results are available for this feature:

BLAST of CsaV3_6G051600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49382.1	5.6e-36	100.00	hypothetical protein Csa_004198 [Cucumis sativus]	[more]
KAG7034699.1	9.5e-28	82.28	hypothetical protein SDJN02_04429, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6581417.1	3.9e-21	80.00	hypothetical protein SDJN03_21419, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ESR62900.1	1.5e-09	57.75	hypothetical protein CICLE_v10017350mg [Citrus clementina]	[more]
KDO78130.1	1.5e-09	57.75	hypothetical protein CISIN_1g036027mg [Citrus sinensis]	[more]

BLAST of CsaV3_6G051600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G051600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX9	2.7e-36	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G522750 PE=4 SV=1	[more]
A0A067GHI9	7.4e-10	57.75	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g036027mg PE=4 SV=1	[more]
V4UFE9	7.4e-10	57.75	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017350mg PE=4 ...	[more]
A0A1R3FVP9	1.3e-09	51.39	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1	[more]
A0A7N2LSF8	1.3e-09	55.07	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CsaV3_6G051600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46295.1	1.3e-06	40.58	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33726:SF3	TRANSMEMBRANE PROTEIN	coord: 13..79
None	No IPR available	PANTHER	PTHR33726	TRANSMEMBRANE PROTEIN	coord: 13..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G051600.1	CsaV3_6G051600.1	mRNA