CsaV3_6G051560 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G051560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription factor bHLH144
Location	chr6: 29996501 .. 29997250 (+)
RNA-Seq Expression	CsaV3_6G051560
Synteny	CsaV3_6G051560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTCATGCAGAGTGACCTCAACTTTTACCTCAAGAAGGCAACGCATCCCACAGCAACCCAGGGGGACGATAATCATATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTGCCTCCTGGGAGAAAGAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTTTGTCCCCAAAATTTCATCATCTTTGACCACACTGACAATCGAAGCCAAATCATGTTTCATCCTGCACTTGCCAACAAACTCAGTGGTCCTACTGCAAATATGTGCTCAAAGTATATCCAAAAGAACTTCTGCGTCAATGACAAGCATCACGAAGATAGAGAAATATCATCTCCTTTGATGGAGGATTTGGACGATATCGATGCATTATTGAGCTTGGAAAACGAAAATCACGAGGACCTTGATGGATCTGAAGATGACGAGGTCAGCACTGCAAGATCTCATTTGAATTATGGAAATCAATCCCCCGATTCTTCATCCTCCTCCACTTACAGCTCAAAACCCAGGAAGAATCACTCATTTAATCCTGTCCACAAGTCGTCAAGCAGTGGAAGCAGCTGCAACAGCGACGTGAAACAGTTAAAACTGAAGAAAATGGTGAGAAAACTGAGAGAGATTCTCCCCGGTGGTTACCAAATGACAACAGTTGCTGTTCTAGACGAAGCTGTTAAATACCTGAAGTCTCTGAAGGACGAGGTGCAGAAACTCGGAGTCGGGGGCTTGGAGAACTAA

mRNA sequence

ATGGACTTCATGCAGAGTGACCTCAACTTTTACCTCAAGAAGGCAACGCATCCCACAGCAACCCAGGGGGACGATAATCATATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTGCCTCCTGGGAGAAAGAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTTTGTCCCCAAAATTTCATCATCTTTGACCACACTGACAATCGAAGCCAAATCATGTTTCATCCTGCACTTGCCAACAAACTCAGTGGTCCTACTGCAAATATGTGCTCAAAGTATATCCAAAAGAACTTCTGCGTCAATGACAAGCATCACGAAGATAGAGAAATATCATCTCCTTTGATGGAGGATTTGGACGATATCGATGCATTATTGAGCTTGGAAAACGAAAATCACGAGGACCTTGATGGATCTGAAGATGACGAGGTCAGCACTGCAAGATCTCATTTGAATTATGGAAATCAATCCCCCGATTCTTCATCCTCCTCCACTTACAGCTCAAAACCCAGGAAGAATCACTCATTTAATCCTGTCCACAAGTCGTCAAGCAGTGGAAGCAGCTGCAACAGCGACGTGAAACAGTTAAAACTGAAGAAAATGGTGAGAAAACTGAGAGAGATTCTCCCCGGTGGTTACCAAATGACAACAGTTGCTGTTCTAGACGAAGCTGTTAAATACCTGAAGTCTCTGAAGGACGAGGTGCAGAAACTCGGAGTCGGGGGCTTGGAGAACTAA

Coding sequence (CDS)

ATGGACTTCATGCAGAGTGACCTCAACTTTTACCTCAAGAAGGCAACGCATCCCACAGCAACCCAGGGGGACGATAATCATATGCAGATTCCTCTGTCATCTGCCTTTCCTTCTGTTTTGCCTCCTGGGAGAAAGAACTTGGGACCTTTCAATACTGTTGAGTTTCAACCTTCTGAAGTTTGTCCCCAAAATTTCATCATCTTTGACCACACTGACAATCGAAGCCAAATCATGTTTCATCCTGCACTTGCCAACAAACTCAGTGGTCCTACTGCAAATATGTGCTCAAAGTATATCCAAAAGAACTTCTGCGTCAATGACAAGCATCACGAAGATAGAGAAATATCATCTCCTTTGATGGAGGATTTGGACGATATCGATGCATTATTGAGCTTGGAAAACGAAAATCACGAGGACCTTGATGGATCTGAAGATGACGAGGTCAGCACTGCAAGATCTCATTTGAATTATGGAAATCAATCCCCCGATTCTTCATCCTCCTCCACTTACAGCTCAAAACCCAGGAAGAATCACTCATTTAATCCTGTCCACAAGTCGTCAAGCAGTGGAAGCAGCTGCAACAGCGACGTGAAACAGTTAAAACTGAAGAAAATGGTGAGAAAACTGAGAGAGATTCTCCCCGGTGGTTACCAAATGACAACAGTTGCTGTTCTAGACGAAGCTGTTAAATACCTGAAGTCTCTGAAGGACGAGGTGCAGAAACTCGGAGTCGGGGGCTTGGAGAACTAA

Protein sequence

MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLMEDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLGVGGLEN*

Homology

[Close]

BLAST of CsaV3_6G051560 vs. NCBI nr
Match: XP_004134628.1 (transcription factor bHLH144 [Cucumis sativus] >XP_004134630.1 transcription factor bHLH144 [Cucumis sativus] >XP_031743511.1 transcription factor bHLH144 [Cucumis sativus] >KGN49377.1 hypothetical protein Csa_003727 [Cucumis sativus])

HSP 1 Score: 496.1 bits (1276), Expect = 1.7e-136
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF
Sbjct: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ
Sbjct: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 241 KLGVGGLEN 249

[Close]

BLAST of CsaV3_6G051560 vs. NCBI nr
Match: XP_008439654.1 (PREDICTED: transcription factor bHLH144 [Cucumis melo] >XP_008439656.1 PREDICTED: transcription factor bHLH144 [Cucumis melo])

HSP 1 Score: 483.8 bits (1244), Expect = 9.0e-133
Identity = 242/249 (97.19%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFCVND H+EDREISSPLM
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLM 120

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSLENENHE LDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF
Sbjct: 121 EDLDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSC+SD+KQLKLKKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQ
Sbjct: 181 NPVHKSSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQ 240

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 241 KLGVGGLEN 249

[Close]

BLAST of CsaV3_6G051560 vs. NCBI nr
Match: KAA0052558.1 (transcription factor bHLH144 [Cucumis melo var. makuwa] >TYK13268.1 transcription factor bHLH144 [Cucumis melo var. makuwa])

HSP 1 Score: 478.0 bits (1229), Expect = 4.9e-131
Identity = 240/249 (96.39%), Postives = 244/249 (97.99%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           M   QSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV
Sbjct: 32  MQVCQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 91

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFCVND H+EDREISSPLM
Sbjct: 92  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLM 151

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSLENENHE LDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF
Sbjct: 152 EDLDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 211

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSC+SD+KQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ
Sbjct: 212 NPVHKSSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 271

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 272 KLGVGGLEN 280

[Close]

BLAST of CsaV3_6G051560 vs. NCBI nr
Match: XP_038881999.1 (transcription factor bHLH144 [Benincasa hispida])

HSP 1 Score: 456.1 bits (1172), Expect = 2.0e-124
Identity = 229/249 (91.97%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLNFYLK+A HP A QGDDNHMQIPLSSAFPSVLPPGRKNLGPFN VEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKQAMHPRANQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNNVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFC+ND+H+EDREISSPLM
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCINDEHYEDREISSPLM 120

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSL++E+HEDLDGSED+E STARSHLNYGNQSPDSSSSS YSSKPRKN SF
Sbjct: 121 EDLDDIDALLSLDDEDHEDLDGSEDEERSTARSHLNYGNQSPDSSSSS-YSSKPRKNKSF 180

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSC+SD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQ
Sbjct: 181 NPVHKSSSSGSSCDSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQ 240

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 241 KLGVGGLEN 248

[Close]

BLAST of CsaV3_6G051560 vs. NCBI nr
Match: XP_023544178.1 (transcription factor bHLH144 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 224/251 (89.24%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLN YLK A  PTA QG DNHMQIPLSSAFPSVLPPGR NLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNCYLKNAMLPTANQGGDNHMQIPLSSAFPSVLPPGRNNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHED-REISSPL 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNF VND+H++D REISSPL
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120

Query: 121 MEDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHS 180
           MEDLDDIDALLSLE+E+HED+DGSED+E+STARSHLNYGNQSPDSSSSS YSSKPRKN S
Sbjct: 121 MEDLDDIDALLSLEDEDHEDIDGSEDEEISTARSHLNYGNQSPDSSSSS-YSSKPRKNQS 180

Query: 181 FNPVHKSSSSG-SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDE 240
           FNPVHK SSSG SS +SD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDE
Sbjct: 181 FNPVHKLSSSGRSSRDSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240

Query: 241 VQKLGVGGLEN 250
           VQKLGVGGLEN
Sbjct: 241 VQKLGVGGLEN 250

[Close]

BLAST of CsaV3_6G051560 vs. ExPASy Swiss-Prot
Match: Q9ASX9 (Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.9e-35
Identity = 102/239 (42.68%), Postives = 142/239 (59.41%), Query Frame = 0


Query: 23  GDDN-HMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHP 82
           GD N H      S++ ++ PP  K   P++ VE QPS VCP+NF+IFD T +RSQ+M+HP
Sbjct: 14  GDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHP 73

Query: 83  ALANKL-SGPTANMCSKYIQKNF---CVNDKHHEDREISSPLMEDLDDIDALLSLE---- 142
            L +KL + P+ N  +   Q  +      +  + ++E+SS   ED ++IDALLS +    
Sbjct: 74  ELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALLSADEDYE 133

Query: 143 --NENHEDLDGSEDDEVSTAR-SHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHKSSSSG 202
             ++N  + DG + +EVSTAR S  +YGN + +S  SS Y      N++      S S+ 
Sbjct: 134 ENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSS-YGYNNNNNNNSRKQSLSGSAS 193

Query: 203 SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLGVGGLEN 250
           SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK E QKLGVG   N
Sbjct: 194 SSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

[Close]

BLAST of CsaV3_6G051560 vs. ExPASy TrEMBL
Match: A0A0A0KLX4 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522710 PE=4 SV=1)

HSP 1 Score: 496.1 bits (1276), Expect = 8.4e-137
Identity = 249/249 (100.00%), Postives = 249/249 (100.00%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF
Sbjct: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ
Sbjct: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 241 KLGVGGLEN 249

[Close]

BLAST of CsaV3_6G051560 vs. ExPASy TrEMBL
Match: A0A1S3AYV1 (transcription factor bHLH144 OS=Cucumis melo OX=3656 GN=LOC103484384 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 4.3e-133
Identity = 242/249 (97.19%), Postives = 246/249 (98.80%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFCVND H+EDREISSPLM
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLM 120

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSLENENHE LDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF
Sbjct: 121 EDLDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSC+SD+KQLKLKKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDEVQ
Sbjct: 181 NPVHKSSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDEVQ 240

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 241 KLGVGGLEN 249

[Close]

BLAST of CsaV3_6G051560 vs. ExPASy TrEMBL
Match: A0A5A7UBJ4 (Transcription factor bHLH144 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008860 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.4e-131
Identity = 240/249 (96.39%), Postives = 244/249 (97.99%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           M   QSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV
Sbjct: 32  MQVCQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 91

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHEDREISSPLM 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNFCVND H+EDREISSPLM
Sbjct: 92  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFCVNDNHYEDREISSPLM 151

Query: 121 EDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 180
           EDLDDIDALLSLENENHE LDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF
Sbjct: 152 EDLDDIDALLSLENENHEGLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHSF 211

Query: 181 NPVHKSSSSGSSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 240
           NPVHKSSSSGSSC+SD+KQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ
Sbjct: 212 NPVHKSSSSGSSCSSDMKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQ 271

Query: 241 KLGVGGLEN 250
           KLGVGGLEN
Sbjct: 272 KLGVGGLEN 280

[Close]

BLAST of CsaV3_6G051560 vs. ExPASy TrEMBL
Match: A0A6J1EDR8 (transcription factor bHLH144-like OS=Cucurbita moschata OX=3662 GN=LOC111433273 PE=4 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.8e-116
Identity = 222/251 (88.45%), Postives = 236/251 (94.02%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLN YLK A  PTA QG DNHMQIPLSSA+PSVLPPGR NLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNCYLKNAMLPTANQGGDNHMQIPLSSAYPSVLPPGRNNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHED-REISSPL 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNF VND+H++D REISSPL
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120

Query: 121 MEDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHS 180
           MEDLDDIDALLSL++E+HED+DGSED+E+STARSHLNYGNQSPDSSSSS YSSKPRKN S
Sbjct: 121 MEDLDDIDALLSLDDEDHEDIDGSEDEEISTARSHLNYGNQSPDSSSSS-YSSKPRKNRS 180

Query: 181 FNPVHKSSSSG-SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDE 240
           FNPVHK SSSG SS +SD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDE
Sbjct: 181 FNPVHKLSSSGRSSRDSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240

Query: 241 VQKLGVGGLEN 250
           VQKLGVGGLEN
Sbjct: 241 VQKLGVGGLEN 250

[Close]

BLAST of CsaV3_6G051560 vs. ExPASy TrEMBL
Match: A0A6J1INB7 (transcription factor bHLH144-like OS=Cucurbita maxima OX=3661 GN=LOC111477984 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 8.2e-116
Identity = 221/251 (88.05%), Postives = 233/251 (92.83%), Query Frame = 0


Query: 1   MDFMQSDLNFYLKKATHPTATQGDDNHMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEV 60
           MDFMQSDLN YLK    PTA QG DNHMQIPLSSAFPSVLP GR NLGPFNTVEFQPSEV
Sbjct: 1   MDFMQSDLNCYLKNTMLPTANQGGDNHMQIPLSSAFPSVLPTGRNNLGPFNTVEFQPSEV 60

Query: 61  CPQNFIIFDHTDNRSQIMFHPALANKLSGPTANMCSKYIQKNFCVNDKHHED-REISSPL 120
           CPQNFIIFDHTDNRSQIMFHPA+ANKLSGPTANMCSKYIQKNF VND+H++D REISSPL
Sbjct: 61  CPQNFIIFDHTDNRSQIMFHPAIANKLSGPTANMCSKYIQKNFYVNDEHNDDSREISSPL 120

Query: 121 MEDLDDIDALLSLENENHEDLDGSEDDEVSTARSHLNYGNQSPDSSSSSTYSSKPRKNHS 180
           MEDLDDIDALLSLE+E+HED+DG ED+E+STARSHLNYGNQSPDSSSS  YSS+PRKN S
Sbjct: 121 MEDLDDIDALLSLEDEDHEDIDGYEDEEISTARSHLNYGNQSPDSSSS--YSSEPRKNQS 180

Query: 181 FNPVHKSSSSG-SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDE 240
           FNPVHK SSSG SSCNSD+KQLK+KKMVRKLREILPGGYQMTTV VLDEAVKYLKSLKDE
Sbjct: 181 FNPVHKLSSSGRSSCNSDMKQLKVKKMVRKLREILPGGYQMTTVTVLDEAVKYLKSLKDE 240

Query: 241 VQKLGVGGLEN 250
           VQKLGVGGLEN
Sbjct: 241 VQKLGVGGLEN 249

[Close]

BLAST of CsaV3_6G051560 vs. TAIR 10
Match: AT1G29950.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 4.9e-36
Identity = 102/239 (42.68%), Postives = 142/239 (59.41%), Query Frame = 0


Query: 23  GDDN-HMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHP 82
           GD N H      S++ ++ PP  K   P++ VE QPS VCP+NF+IFD T +RSQ+M+HP
Sbjct: 14  GDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHP 73

Query: 83  ALANKL-SGPTANMCSKYIQKNF---CVNDKHHEDREISSPLMEDLDDIDALLSLE---- 142
            L +KL + P+ N  +   Q  +      +  + ++E+SS   ED ++IDALLS +    
Sbjct: 74  ELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALLSADEDYE 133

Query: 143 --NENHEDLDGSEDDEVSTAR-SHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHKSSSSG 202
             ++N  + DG + +EVSTAR S  +YGN + +S  SS Y      N++      S S+ 
Sbjct: 134 ENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSS-YGYNNNNNNNSRKQSLSGSAS 193

Query: 203 SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLGVGGLEN 250
           SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK E QKLGVG   N
Sbjct: 194 SSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

[Close]

BLAST of CsaV3_6G051560 vs. TAIR 10
Match: AT1G29950.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 4.9e-36
Identity = 102/239 (42.68%), Postives = 142/239 (59.41%), Query Frame = 0


Query: 23  GDDN-HMQIPLSSAFPSVLPPGRKNLGPFNTVEFQPSEVCPQNFIIFDHTDNRSQIMFHP 82
           GD N H      S++ ++ PP  K   P++ VE QPS VCP+NF+IFD T +RSQ+M+HP
Sbjct: 14  GDRNMHNPYASGSSYDALFPPCAKL--PYHGVELQPSAVCPKNFVIFDQTYDRSQVMYHP 73

Query: 83  ALANKL-SGPTANMCSKYIQKNF---CVNDKHHEDREISSPLMEDLDDIDALLSLE---- 142
            L +KL + P+ N  +   Q  +      +  + ++E+SS   ED ++IDALLS +    
Sbjct: 74  ELTHKLMNTPSLNNLASTFQNEYVGGSYGNYGNYEQEVSSSYQEDPNEIDALLSADEDYE 133

Query: 143 --NENHEDLDGSEDDEVSTAR-SHLNYGNQSPDSSSSSTYSSKPRKNHSFNPVHKSSSSG 202
             ++N  + DG + +EVSTAR S  +YGN + +S  SS Y      N++      S S+ 
Sbjct: 134 ENDDNEGEEDGGDSEEVSTARTSSRDYGNTTAESCCSS-YGYNNNNNNNSRKQSLSGSAS 193

Query: 203 SSCNSDVKQLKLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKLGVGGLEN 250
           SS N    + K+KKM+  LR I+PGG QM T  VLDEAV+YLKSLK E QKLGVG   N
Sbjct: 194 SSNNDGKGRKKMKKMMGVLRRIVPGGEQMNTACVLDEAVQYLKSLKIEAQKLGVGHFSN 249

[Close]

BLAST of CsaV3_6G051560 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 201 KLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKL 243
           ++ + +R L+ ++PGG +M T ++LDEA+ Y+K LK +VQ L
Sbjct: 140 RISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 181

[Close]

BLAST of CsaV3_6G051560 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 201 KLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKL 243
           ++ + +R L+ ++PGG +M T ++LDEA+ Y+K LK +VQ L
Sbjct: 143 RISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 184

[Close]

BLAST of CsaV3_6G051560 vs. TAIR 10
Match: AT4G00120.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 8.4e-04
Identity = 18/42 (42.86%), Postives = 31/42 (73.81%), Query Frame = 0


Query: 201 KLKKMVRKLREILPGGYQMTTVAVLDEAVKYLKSLKDEVQKL 243
           ++ + +R L+ I+PGG +M T ++LDEA++Y K LK +V+ L
Sbjct: 133 RISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRIL 174

The following BLAST results are available for this feature:

BLAST of CsaV3_6G051560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134628.1	1.7e-136	100.00	transcription factor bHLH144 [Cucumis sativus] >XP_004134630.1 transcription fac...	[more]
XP_008439654.1	9.0e-133	97.19	PREDICTED: transcription factor bHLH144 [Cucumis melo] >XP_008439656.1 PREDICTED...	[more]
KAA0052558.1	4.9e-131	96.39	transcription factor bHLH144 [Cucumis melo var. makuwa] >TYK13268.1 transcriptio...	[more]
XP_038881999.1	2.0e-124	91.97	transcription factor bHLH144 [Benincasa hispida]	[more]
XP_023544178.1	2.0e-116	89.24	transcription factor bHLH144 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G051560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ASX9	6.9e-35	42.68	Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=...	[more]

BLAST of CsaV3_6G051560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLX4	8.4e-137	100.00	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G522710 PE=4 S...	[more]
A0A1S3AYV1	4.3e-133	97.19	transcription factor bHLH144 OS=Cucumis melo OX=3656 GN=LOC103484384 PE=4 SV=1	[more]
A0A5A7UBJ4	2.4e-131	96.39	Transcription factor bHLH144 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A6J1EDR8	4.8e-116	88.45	transcription factor bHLH144-like OS=Cucurbita moschata OX=3662 GN=LOC111433273 ...	[more]
A0A6J1INB7	8.2e-116	88.05	transcription factor bHLH144-like OS=Cucurbita maxima OX=3661 GN=LOC111477984 PE...	[more]

BLAST of CsaV3_6G051560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29950.1	4.9e-36	42.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G29950.2	4.9e-36	42.68	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G50330.1	2.9e-04	42.86	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	2.9e-04	42.86	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT4G00120.1	8.4e-04	42.86	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 137..196
None	No IPR available	PANTHER	PTHR36066:SF11	TRANSCRIPTION FACTOR BHLH144	coord: 4..247
IPR037546	Transcription factor SAC51-like	PANTHER	PTHR36066	TRANSCRIPTION FACTOR BHLH145	coord: 4..247
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 186..235 score: 8.917859
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 201..243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G051560.1	CsaV3_6G051560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity