CsaV3_6G051280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G051280
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Locationchr6: 29846370 .. 29846755 (-)
RNA-Seq ExpressionCsaV3_6G051280
SyntenyCsaV3_6G051280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAAGTTAGGAATGAGATTGAAGAGCTTTCTGAGATTCCATTTGAGGAGAAAGTGGAGCACTGTGGAATAAAAGTATGGGAAGTTGAAGGTTATGGTACAGTTTTTGAAAGGAGAAGATCAGAAAATAGATTGGAGAGACAAATTATATTTCCATTACAATCCTGTTTGTAGAAATAAAATAACTTTCTTCCGCCATCCTTTTAGGTATTAATTTCCCCTCTTTTTCCAACATTTTCACTTTCTCCAATGGTGTACAGTCAAGTTATGCACCTGATGAAATTGAGGGAATCGGAAAGAATGGGTTGGTGACTGCCGGGATGAGTTGCTATCCGCCAAGTCCACGCCCAGACATGGCAATGGGGCTAACTCCTCACTCATAA

mRNA sequence

ATGGACGAAGTTAGGAATGAGATTGAAGAGCTTTCTGAGATTCCATTTGAGGAGAAAGTGGAGCACTGTGGAATAAAAGTATGGGAAGTTGAAGGTTATGGTATTAATTTCCCCTCTTTTTCCAACATTTTCACTTTCTCCAATGGTGTACAGTCAAGTTATGCACCTGATGAAATTGAGGGAATCGGAAAGAATGGGTTGGTGACTGCCGGGATGAGTTGCTATCCGCCAAGTCCACGCCCAGACATGGCAATGGGGCTAACTCCTCACTCATAA

Coding sequence (CDS)

ATGGACGAAGTTAGGAATGAGATTGAAGAGCTTTCTGAGATTCCATTTGAGGAGAAAGTGGAGCACTGTGGAATAAAAGTATGGGAAGTTGAAGGTTATGGTATTAATTTCCCCTCTTTTTCCAACATTTTCACTTTCTCCAATGGTGTACAGTCAAGTTATGCACCTGATGAAATTGAGGGAATCGGAAAGAATGGGTTGGTGACTGCCGGGATGAGTTGCTATCCGCCAAGTCCACGCCCAGACATGGCAATGGGGCTAACTCCTCACTCATAA

Protein sequence

MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIEGIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS*
Homology
BLAST of CsaV3_6G051280 vs. NCBI nr
Match: KGN49349.1 (hypothetical protein Csa_002973 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 6.8e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIE 60
          MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIE
Sbjct: 1  MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIE 60

Query: 61 GIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 92
          GIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS
Sbjct: 61 GIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 91

BLAST of CsaV3_6G051280 vs. ExPASy TrEMBL
Match: A0A0A0KKH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520470 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.3e-46
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 1  MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIE 60
          MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIE
Sbjct: 1  MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAPDEIE 60

Query: 61 GIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 92
          GIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS
Sbjct: 61 GIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 91

BLAST of CsaV3_6G051280 vs. ExPASy TrEMBL
Match: A0A7J7GVN6 (Fe2OG dioxygenase domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_018078 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-04
Identity = 33/96 (34.38%), Postives = 56/96 (58.33%), Query Frame = 0

Query: 1   MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGIN--FPSFSNIFTFSNGVQS---SYA 60
           +++V+ EI+EL ++P EEK+++  I+  +VEG  +        N+ T   G+ +      
Sbjct: 81  VEKVKYEIKELYKLPLEEKMKY-KIQPGDVEGETLESYISELQNLATTIFGLMAKALKID 140

Query: 61  PDEIEGIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 92
             E+E +  +G+ +  MS YPP P+P+M MGL PHS
Sbjct: 141 KGEMEEMFDDGVQSVRMSYYPPCPQPEMVMGLRPHS 175

BLAST of CsaV3_6G051280 vs. ExPASy TrEMBL
Match: A0A6A6LYB9 (Fe2OG dioxygenase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_004411 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04
Identity = 32/108 (29.63%), Postives = 55/108 (50.93%), Query Frame = 0

Query: 1   MDEVRNEIEELSEIPFEEKVEHCGIKVWEVEGYGINFPSFSNIFTFSNGVQSSYAP---- 60
           ++ +RNEIEE   +P EEK+++  I+  +VEGYG        IF + + +     P    
Sbjct: 85  LENMRNEIEEFYNLPLEEKMKY-KIRQGDVEGYG-TMARVGGIFDWGDKLSMITNPIHRR 144

Query: 61  -------------DEIEGIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 92
                         E+E +  +G+ +  M+ YPP P+P++ +G+ PHS
Sbjct: 145 KPHLLPELPSSLRKEMEEMFDDGMQSVRMTYYPPCPQPELVLGIFPHS 190

BLAST of CsaV3_6G051280 vs. TAIR 10
Match: AT2G44800.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 0

Query: 47  SNGVQSSYAPDEIEGIGKNGLVTAGMSCYPPSPRPDMAMGLTPHS 92
           S G++ +Y  +EIE     G     ++CYP  P P+MA+G+ PHS
Sbjct: 191 SLGLEKNYLQEEIE----EGSQVMAVNCYPACPEPEMALGMPPHS 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49349.16.8e-46100.00hypothetical protein Csa_002973 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KKH93.3e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G520470 PE=4 SV=1[more]
A0A7J7GVN65.3e-0434.38Fe2OG dioxygenase domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC8... [more]
A0A6A6LYB97.0e-0429.63Fe2OG dioxygenase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH7... [more]
Match NameE-valueIdentityDescription
AT2G44800.14.0e-0440.002-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY51197Clavaminate synthase-likecoord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G051280.1CsaV3_6G051280.1mRNA