CsaV3_6G051140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G051140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr6: 29774453 .. 29779108 (-)
RNA-Seq Expression	CsaV3_6G051140
Synteny	CsaV3_6G051140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGACTTCAACTGAAGCTTTGGTAAAAGCTCTCCTTAGGAATCCCCTATCCATAAAATCCAGATCACAAGCTCAACAACTCCACGCCCAGGTTCTCAAATTTCAAGCTTCATCTCTTTGCAATCTCTCCCTCCTTCTATCCATCTACTCTCACATTAATCTTCTCCACGATTCACTTCGTCTTTTCAACACCATTCATTTCCCTCCAGCGCTTGCTTGGAAATCTGTCATTCGTTGCTACACTTCTCATGGCCTTCCTCATCAGTCCTTGGGTTCTTTTATTGGAATGTTGGCCTCTGGGCTATACCCAGATCACAATGTCTTCCCTTCTGTTCTAAAATCTTGCGCATTGCTTATGGATTTGAATTTGGGGGAGTCTCTTCACGGCTACATCATAAGGGTGGGTTTGGATTTTGATTTGTATACTGGTAATGCGTTGATGAATATGTATTCGAAACTGCGGTTTCTGGAGGAGAGTGGAAGGCAGAGACTTGGTGCGGGTGAAGTGTTCGATGAAATGACTGAAAGAACACGAAGTGTTAGAACTGTCTCTGTCTTAGTTGGTAATGAGGGGAGGAAAGTAAGTGACATGGAAGCATTTAATTATGACGTTTCTTGCAGAAGCAGGGAATTTGAAGCCCAAGTTCTTGAAATAGACTACAAACCGAGAAATCAATATAGGGAATTGGAAGCCTGCAATCTTGGGCAACAAATCAAAGATATTTCTCATTCGAAGAGTGAGGATAGCGTGAGAAAGATCTTTGAGATGATGCCTGAAAAGGATCTTGTCTCATGGAACACTATAATTGCTGGAAATGCTCGGAATGGTTTGTATGAAGAAACTTTAAGGATGATTAGAGAGATGGGTGGTGCTAATTTGAAGCCCGATTCCTTTACTTTGTCTAGTGTGCTTCCTCTTATTGCAGAGAATGTGGATATTAGTAGAGGAAAAGAGATCCATGGATGTTCCATAAGACAGGGTCTTGATGCAGACATATATGTTGCAAGTAGCTTAATTGATATGTATGCAAAGTGCACACGAGTAGCGGATTCCTGTCGTGTATTTACTCTCTTGACTGAACGTGATGGGATTTCATGGAATTCTATCATTGCAGGGTGTGTGCAGAATGGTCTATTTGATGAAGGTCTAAGATTTTTTCGCCAAATGTTAATGGCTAAAATCAAGCCCAAGAGTTATTCCTTCTCAAGTATTATGCCAGCTTGCGCTCACTTGACAACATTGCATCTAGGAAAGCAGCTCCATGGATACATCACAAGGAATGGCTTTGATGAAAACATTTTCATAGCAAGTTCGCTTGTGGACATGTATGCAAAATGCGGAAACATTAGGACGGCCAAGCAGATCTTTGATAGGATGAGGTTACGGGACATGGTATCCTGGACTGCCATGATTATGGGATGTGCTTTGCACGGTCAAGCTCCTGATGCTATTGAATTATTTGAACAAATGGAAACAGAAGGAATAAAACCAAATCATGTAGCTTTCATGGCTGTATTAACAGCCTGTAGCCATGGCGGATTAGTTGATGAAGCTTGGAAATACTTTAATAGCATGACACGAGATTTCGGGATTGCTCCAGGAGTGGAACACTATGCTGCTGTTTCAGACCTCCTTGGACGAGCTGGAAGGTTGGAGGAAGCTTATGACTTTATCTGTGGGATGCATATAGGACCAACTGGGAGTATATGGGCCACATTGCTGTCTGCTTGTCGAGTTCACAAAAACATTGACATGGCTGAAAAGGTAGCTAATAGAATTCTCGAAGTTGATCCCAATAATACGGGAGCTTATATATTACTAGCAAACATATATTCTGCTGCAAGGAGATGGAAAGAGGCAGCAAAATGGAGAGCTTCAATGAGGCGCATAGGTATAAGAAAGACACCAGCCTGCAGCTGGATTGAAGTTAAAAACAAGGTATATGCTTTCATGGCTGGAGATGAATCTCATCCTTGTTATGAGAAAATAAGAGAAGCCATGGAAGTCCTAGTGGAGCTGATGGAAAAAGAGGGTTATGTGCCAGATACAAGTGAGGTTCATCACGATGTGGAAGAAGAGCAAAAGAAATACTTGGTTTGTAGCCATAGTGAGCGGCTTGCCATTGTGTTTGGTATTATCAACACACCAGCCGGGATGACAATTCGTGTGACAAAGAACCTCCGCGTGTGTACAGACTGTCACACGGCAACAAAGTTCATTTCAAAGATAGTTGGGAGGGAGATAGTTGTGAGGGATAACAGTCGATTTCACCATTTCAAGAATGGAACGTGTTCTTGTGGAGATTACTGGTGACAATAATAGTGGGAGATTTCTCACATTGTTCAGTTTTAAACTAATGCAAGTTGGATCATTGTCCCAAGTTCTTCTGGGCCTTAATATTGGAAAGTTTTCGATGATGAGTGCAGTAACCGTGGATAAGAGAAGGTAGGAAGGAAGCATCAAATTATTTGCCGATAGAAGACTTGGAATATCATTCATCACATTACAAAAGAAAAGAAAAGAAAACAAATCGGGTCTCACATGTGGGTAAAACCTTAAAAAACATTTTTACACAAATGATTAGTGAGAATATACTAACTTATACACAAATCATAAGAATTAAATTAAAATTCCTTTGTGCTGTGCTCAAATGATTTTTCTTTGTGTTTTGTAGCCCTTGTGGGGTTTTTTATATTTCAACTCTATTTTTTACAAATAATTTCTACACAACTTACTTTCTTTTTGCAAATTGTTTTCAAAATCATTCTATTTTAACACTTAAAAATCTCTTCTTGTTTGTACACTCTCTATCTCAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATAATAATTATATTATATTAAAAAATTGAAAATAAACCTATAAATTTCGTCCTTTTTTTTTTTTTTTTTGATCAACACGATAAAAAATAATCATAAGATTGTTATCAAGAAACCATATGGACTCTCAAAGTTTTGTTCATCATTTATGCTTTTGGGGTTTTGCTAAAAGAAATTATTAGGGGTGGGGTTCTTCTTGAAACCCTAAATTGCAGGTAGTGGACTGTGCTGGACCTTTCGCTTCGCCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAACATGCAGGTACGAACTAAACATACAACCTCTTATTCACTGTTTTCTATACTTTTGTATTCCCATTTTGGGTTGTGTTTCACTTTACTTGAGCAGTAACCAAACAGCCCTGCAAGTGATTCCAATTTATTTCGTACTTTTCGATTTCAGCTTATTCAACACTTAGAGATGAGTTTATAACTTCACTTCTTGTTGATCCTGTAACCCGTTGGTCAGTATCACTCAGCCGTTTCGTTTTGTTGATCGGAGGCCTTCCTCTGTTGTGATAGTCTGAATCCTCAAATTGTGGGAGATTAGGATTTTTCTATTTTTCATTCACTGGGAATAACTCACCACTTAGCTCACGGAGGAAAAAAAAGATGTATTTGTATATTTAGGGTTTGTTTATTTTCAGTTGCTATGTAATCCGAGTTATATCATTCTGCTGCTGCCTGCAAATGGGCTCTGCACGAAGGGAGCAACCAAGAATTATAACAATATTATGTTAAATTCTTAATTACGATTCAGTTGGTTAGTCTCGTGTGTGGATGTCAAGCCTCTTAATCAACAATTCATCTTTGAAATTTGAGATTGATGGTGGATTCCTGTCATTGCTCAAATTTGCTTTCGTTTGACCACGCGCTAATGTTGGTTTCTCACATTTGATTCAGGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTGTTAGTTTTCCATTCCTTCCGAGTCTTGATCTTCTATTGGTTTTCGTTTTAGTTTTCATGTCTGAATTCACATCTTTGTGTGTACAGTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGGTTGATATTTTTTTCTTTTTGTTTTCTTATTCATAATTTTCCTAGTGAGCTTCCTCTTCTCTCATTCTTAGTTTTTTTCTTTTGAAATTCTTCATTGGGTAGAAAATTATCTTAGATTTGTTTTTGTACCTTTCTAGCGTATATCTTCCTATAGTTGTAGTTAATCTGTACCTCTGAATGTAATGATCAATACCGTCTGCTGCACTACCTTAACTTGCCTTTCTCCCATGAACATGACTTTCAAGTCCTATTTTTATATGATTCCTTGGTAATTGTTCTCTTGATACATTTCTGCCTTTTCTTTTTCATCCCATGTATATGTATAAACCATCATTTGAACATTCAACGTGAATGATTTTAAGTGCATTCAGTGTGTGCGTATGTATTGCTTTTCAGTTTTGAAATGTGGGGTTATACCCAGCAAAATTTCATCATATTTTCTCATAGGATGCCATTTTGGACATAACTCAAAAATATAAAATGGTTTGTTTTCCGTTCCCTTTTTGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

mRNA sequence

ATGAGGACTTCAACTGAAGCTTTGGTAAAAGCTCTCCTTAGGAATCCCCTATCCATAAAATCCAGATCACAAGCTCAACAACTCCACGCCCAGGTTCTCAAATTTCAAGCTTCATCTCTTTGCAATCTCTCCCTCCTTCTATCCATCTACTCTCACATTAATCTTCTCCACGATTCACTTCGTCTTTTCAACACCATTCATTTCCCTCCAGCGCTTGCTTGGAAATCTGTCATTCGTTGCTACACTTCTCATGGCCTTCCTCATCAGTCCTTGGGTTCTTTTATTGGAATGTTGGCCTCTGGGCTATACCCAGATCACAATGTCTTCCCTTCTGTTCTAAAATCTTGCGCATTGCTTATGGATTTGAATTTGGGGGAGTCTCTTCACGGCTACATCATAAGGGTGGGTTTGGATTTTGATTTGTATACTGGTAATGCGTTGATGAATATGTATTCGAAACTGCGGTTTCTGGAGGAGAGTGGAAGGCAGAGACTTGGTGCGGGTGAAGTGTTCGATGAAATGACTGAAAGAACACGAAGTGTTAGAACTGTCTCTGTCTTAGTTGGTAATGAGGGGAGGAAAGTAGTGGACTGTGCTGGACCTTTCGCTTCGCCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAACATGCAGCTTATTCAACACTTAGAGATGAGTTTATAACTTCACTTCTTGTTGATCCTGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Coding sequence (CDS)

ATGAGGACTTCAACTGAAGCTTTGGTAAAAGCTCTCCTTAGGAATCCCCTATCCATAAAATCCAGATCACAAGCTCAACAACTCCACGCCCAGGTTCTCAAATTTCAAGCTTCATCTCTTTGCAATCTCTCCCTCCTTCTATCCATCTACTCTCACATTAATCTTCTCCACGATTCACTTCGTCTTTTCAACACCATTCATTTCCCTCCAGCGCTTGCTTGGAAATCTGTCATTCGTTGCTACACTTCTCATGGCCTTCCTCATCAGTCCTTGGGTTCTTTTATTGGAATGTTGGCCTCTGGGCTATACCCAGATCACAATGTCTTCCCTTCTGTTCTAAAATCTTGCGCATTGCTTATGGATTTGAATTTGGGGGAGTCTCTTCACGGCTACATCATAAGGGTGGGTTTGGATTTTGATTTGTATACTGGTAATGCGTTGATGAATATGTATTCGAAACTGCGGTTTCTGGAGGAGAGTGGAAGGCAGAGACTTGGTGCGGGTGAAGTGTTCGATGAAATGACTGAAAGAACACGAAGTGTTAGAACTGTCTCTGTCTTAGTTGGTAATGAGGGGAGGAAAGTAGTGGACTGTGCTGGACCTTTCGCTTCGCCTGCCTTCTCTGCTTCGTCGCGCCTATTGCAATTTGCGAGCGAACATGCAGCTTATTCAACACTTAGAGATGAGTTTATAACTTCACTTCTTGTTGATCCTGCCAGTGATAGATTTAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACCGGGCATGCCGACTTAAACAGATTTGAGTGGGCAGTGAACATTCAGCGTGATAGCTATGCATCTTATGTTGGACATTACCCCATTCTAGCGTACTTTGCTGTAGCAGAAAATGAATCTATTGGGAGGGAACGCTATAACTTTATGCAGAAAATGTTACTACCCTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLVGNEGRKVVDCAGPFASPAFSASSRLLQFASEHAAYSTLRDEFITSLLVDPASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIGRERYNFMQKMLLPCGLPPEREDD*

Homology

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BLAST of CsaV3_6G051140 vs. NCBI nr
Match: KAE8647725.1 (hypothetical protein Csa_003800 [Cucumis sativus])

HSP 1 Score: 644.0 bits (1660), Expect = 6.7e-181
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 0


Query: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60
           MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL
Sbjct: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60

Query: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
           RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
           DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 181 VRTVSVLVGNEGRKVVDCAGPFASPAFSASSRLLQFASEHAAYSTLRDEFITSLLVDPAS 240
           VRTVSVLVGNEGRKVVDCAGPFASPAFSASSRLLQFASEHAAYSTLRDEFITSLLVDPAS
Sbjct: 181 VRTVSVLVGNEGRKVVDCAGPFASPAFSASSRLLQFASEHAAYSTLRDEFITSLLVDPAS 240

Query: 241 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIG 300
           DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIG
Sbjct: 241 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIG 300

Query: 301 RERYNFMQKMLLPCGLPPEREDD 324
           RERYNFMQKMLLPCGLPPEREDD
Sbjct: 301 RERYNFMQKMLLPCGLPPEREDD 323

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BLAST of CsaV3_6G051140 vs. NCBI nr
Match: XP_011658262.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])

HSP 1 Score: 384.0 bits (985), Expect = 1.3e-102
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60
           MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL
Sbjct: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60

Query: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
           RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
           DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 181 VRTVSVLVGNEGRKVVD 198
           VRTVSVLVGNEGRKV D
Sbjct: 181 VRTVSVLVGNEGRKVSD 197

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BLAST of CsaV3_6G051140 vs. NCBI nr
Match: XP_008439708.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo] >ADN34022.1 hypothetical protein [Cucumis melo subsp. melo] >KAA0052596.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK13229.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 361.7 bits (927), Expect = 6.7e-96
Identity = 181/195 (92.82%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 62
           TSTEALV +LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL
Sbjct: 5   TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 64

Query: 63  FNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDL 122
           FNT+HFPPALAWKSVIRCYTSHGLPH+SLGSFIGMLASGLYPDHNVFPSVLK+CA+LMDL
Sbjct: 65  FNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDL 124

Query: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182
           NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL++SGRQRLGA +V DEMTERTRSVR
Sbjct: 125 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVR 184

Query: 183 TVSVLVGNEGRKVVD 198
           T SVLVGN+GRKV D
Sbjct: 185 TASVLVGNQGRKVSD 199

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BLAST of CsaV3_6G051140 vs. NCBI nr
Match: XP_038891906.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Benincasa hispida] >XP_038891907.1 putative pentatricopeptide repeat-containing protein At3g23330 [Benincasa hispida])

HSP 1 Score: 352.8 bits (904), Expect = 3.1e-93
Identity = 177/197 (89.85%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60
           MRT+TEALVKALLRNP SIKSRSQAQQLHAQVLKFQASSL NLSL+LS+YSHINLLHDS+
Sbjct: 1   MRTATEALVKALLRNPTSIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHINLLHDSI 60

Query: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
           RLFNT+ FPPALAWKS+IRCYTSHGLPHQSL SFIGMLASGLYPDHNVFPSVLKSCALL+
Sbjct: 61  RLFNTLQFPPALAWKSIIRCYTSHGLPHQSLPSFIGMLASGLYPDHNVFPSVLKSCALLV 120

Query: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
           DLNLGES+HGYII+VGL+FDLYTGNALMNMYSKL FL+ESGRQRLG GEVFDEMT+RTRS
Sbjct: 121 DLNLGESVHGYIIKVGLNFDLYTGNALMNMYSKLGFLQESGRQRLGTGEVFDEMTKRTRS 180

Query: 181 VRTVSVLVGNEGRKVVD 198
           VRT SVLVGNEGRKV D
Sbjct: 181 VRTASVLVGNEGRKVSD 197

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BLAST of CsaV3_6G051140 vs. NCBI nr
Match: XP_022978655.1 (putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima] >XP_022978656.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima] >XP_022978657.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima] >XP_022978658.1 putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima])

HSP 1 Score: 335.5 bits (859), Expect = 5.1e-88
Identity = 169/192 (88.02%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60
           MRTSTEALVKALL+NP +IKSRSQAQQLHAQVLKFQASSL NLSL+LS+YSHINLL DSL
Sbjct: 1   MRTSTEALVKALLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
           RLFNT+HFPP LAWKS+IRCYTSHGLPHQSL SFIGMLASGLYPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
           DL LGES+HGYI+RVGLDFDLYTGNALMNMYSKLRFL+ESGRQRLG GEVFDEMTERT +
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLQESGRQRLGTGEVFDEMTERTLT 180

Query: 181 VRTVSVLVGNEG 193
            RT S LVG+ G
Sbjct: 181 GRTSSALVGSVG 192

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BLAST of CsaV3_6G051140 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.0e-51
Identity = 104/200 (52.00%), Postives = 143/200 (71.50%), Query Frame = 0


Query: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 62
           +S++AL+K L++NP  IKS+SQA+QLHAQ ++ Q+ S  + S+++SIY+++ LLH++L L
Sbjct: 2   SSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLL 61

Query: 63  FNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDL 122
           F T+  PP LAWKSVIRC+T   L  ++L SF+ M ASG  PDHNVFPSVLKSC ++MDL
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182
             GES+HG+I+R+G+D DLYTGNALMNMY+KL  +      ++  G VFDEM +RT +  
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM----GSKISVGNVFDEMPQRTSN-- 181

Query: 183 TVSVLVGNEGRKVVDCAGPF 203
                 G+E  K   C  PF
Sbjct: 182 -----SGDEDVKAETCIMPF 190

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BLAST of CsaV3_6G051140 vs. ExPASy Swiss-Prot
Match: Q9LW64 (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.8e-43
Identity = 78/85 (91.76%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 239 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENES 298
           ASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENES
Sbjct: 3   ASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 299 IGRERYNFMQKMLLPCGLPPEREDD 324
           IGRERYNFMQKMLLPCGLPPERED+
Sbjct: 63  IGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy Swiss-Prot
Match: P58728 (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.8e-43
Identity = 78/85 (91.76%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 239 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENES 298
           ASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENES
Sbjct: 3   ASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 299 IGRERYNFMQKMLLPCGLPPEREDD 324
           IGRERYNFMQKMLLPCGLPPERE++
Sbjct: 63  IGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy Swiss-Prot
Match: Q9VHI4 (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 4.7e-28
Identity = 54/83 (65.06%), Postives = 67/83 (80.72%), Query Frame = 0


Query: 241 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESIG 300
           +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFA+AENES  
Sbjct: 3   ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 301 RERYNFMQKMLLPCGLPPEREDD 324
           R R+N M++ML PCG PPE+ +D
Sbjct: 63  RVRFNLMERMLQPCGPPPEKLED 85

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy Swiss-Prot
Match: Q56K13 (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.0e-26
Identity = 50/84 (59.52%), Postives = 67/84 (79.76%), Query Frame = 0


Query: 240 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENESI 299
           +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFA+AENES 
Sbjct: 2   TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 300 GRERYNFMQKMLLPCGLPPEREDD 324
            R R+N M+KML PCG P ++ ++
Sbjct: 62  ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy TrEMBL
Match: A0A0A0KHY2 (DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G520330 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 6.1e-103
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60
           MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL
Sbjct: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60

Query: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
           RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
           DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS
Sbjct: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180

Query: 181 VRTVSVLVGNEGRKVVD 198
           VRTVSVLVGNEGRKV D
Sbjct: 181 VRTVSVLVGNEGRKVSD 197

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy TrEMBL
Match: A0A5D3CSN4 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008440 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 3.2e-96
Identity = 181/195 (92.82%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 62
           TSTEALV +LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL
Sbjct: 5   TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 64

Query: 63  FNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDL 122
           FNT+HFPPALAWKSVIRCYTSHGLPH+SLGSFIGMLASGLYPDHNVFPSVLK+CA+LMDL
Sbjct: 65  FNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDL 124

Query: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182
           NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL++SGRQRLGA +V DEMTERTRSVR
Sbjct: 125 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVR 184

Query: 183 TVSVLVGNEGRKVVD 198
           T SVLVGN+GRKV D
Sbjct: 185 TASVLVGNQGRKVSD 199

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy TrEMBL
Match: E5GC23 (DYW_deaminase domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 3.2e-96
Identity = 181/195 (92.82%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 62
           TSTEALV +LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL
Sbjct: 5   TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 64

Query: 63  FNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDL 122
           FNT+HFPPALAWKSVIRCYTSHGLPH+SLGSFIGMLASGLYPDHNVFPSVLK+CA+LMDL
Sbjct: 65  FNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDL 124

Query: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182
           NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL++SGRQRLGA +V DEMTERTRSVR
Sbjct: 125 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVR 184

Query: 183 TVSVLVGNEGRKVVD 198
           T SVLVGN+GRKV D
Sbjct: 185 TASVLVGNQGRKVSD 199

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy TrEMBL
Match: A0A1S3AYZ6 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo OX=3656 GN=LOC103484425 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 3.2e-96
Identity = 181/195 (92.82%), Postives = 190/195 (97.44%), Query Frame = 0


Query: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 62
           TSTEALV +LLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL
Sbjct: 5   TSTEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 64

Query: 63  FNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDL 122
           FNT+HFPPALAWKSVIRCYTSHGLPH+SLGSFIGMLASGLYPDHNVFPSVLK+CA+LMDL
Sbjct: 65  FNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDL 124

Query: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182
           NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFL++SGRQRLGA +V DEMTERTRSVR
Sbjct: 125 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVR 184

Query: 183 TVSVLVGNEGRKVVD 198
           T SVLVGN+GRKV D
Sbjct: 185 TASVLVGNQGRKVSD 199

[Close]

BLAST of CsaV3_6G051140 vs. ExPASy TrEMBL
Match: A0A6J1ING2 (putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxima OX=3661 GN=LOC111478561 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.5e-88
Identity = 169/192 (88.02%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1   MRTSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSL 60
           MRTSTEALVKALL+NP +IKSRSQAQQLHAQVLKFQASSL NLSL+LS+YSHINLL DSL
Sbjct: 1   MRTSTEALVKALLKNPSAIKSRSQAQQLHAQVLKFQASSLSNLSLVLSLYSHINLLDDSL 60

Query: 61  RLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLM 120
           RLFNT+HFPP LAWKS+IRCYTSHGLPHQSL SFIGMLASGLYPDHNVFPSVLKSCALLM
Sbjct: 61  RLFNTLHFPPPLAWKSIIRCYTSHGLPHQSLASFIGMLASGLYPDHNVFPSVLKSCALLM 120

Query: 121 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRS 180
           DL LGES+HGYI+RVGLDFDLYTGNALMNMYSKLRFL+ESGRQRLG GEVFDEMTERT +
Sbjct: 121 DLRLGESVHGYILRVGLDFDLYTGNALMNMYSKLRFLQESGRQRLGTGEVFDEMTERTLT 180

Query: 181 VRTVSVLVGNEG 193
            RT S LVG+ G
Sbjct: 181 GRTSSALVGSVG 192

[Close]

BLAST of CsaV3_6G051140 vs. TAIR 10
Match: AT3G23330.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-52
Identity = 104/200 (52.00%), Postives = 143/200 (71.50%), Query Frame = 0


Query: 3   TSTEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRL 62
           +S++AL+K L++NP  IKS+SQA+QLHAQ ++ Q+ S  + S+++SIY+++ LLH++L L
Sbjct: 2   SSSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLL 61

Query: 63  FNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDL 122
           F T+  PP LAWKSVIRC+T   L  ++L SF+ M ASG  PDHNVFPSVLKSC ++MDL
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 123 NLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVR 182
             GES+HG+I+R+G+D DLYTGNALMNMY+KL  +      ++  G VFDEM +RT +  
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGM----GSKISVGNVFDEMPQRTSN-- 181

Query: 183 TVSVLVGNEGRKVVDCAGPF 203
                 G+E  K   C  PF
Sbjct: 182 -----SGDEDVKAETCIMPF 190

[Close]

BLAST of CsaV3_6G051140 vs. TAIR 10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-44
Identity = 78/85 (91.76%), Postives = 84/85 (98.82%), Query Frame = 0


Query: 239 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENES 298
           ASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFA+AENES
Sbjct: 3   ASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 299 IGRERYNFMQKMLLPCGLPPEREDD 324
           IGRERYNFMQKMLLPCGLPPERED+
Sbjct: 63  IGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of CsaV3_6G051140 vs. TAIR 10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10 )

HSP 1 Score: 176.0 bits (445), Expect = 4.8e-44
Identity = 78/85 (91.76%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 239 ASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAENES 298
           ASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFA+AENES
Sbjct: 3   ASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENES 62

Query: 299 IGRERYNFMQKMLLPCGLPPEREDD 324
           IGRERYNFMQKMLLPCGLPPERE++
Sbjct: 63  IGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of CsaV3_6G051140 vs. TAIR 10
Match: AT5G52630.1 (mitochondrial RNAediting factor 1 )

HSP 1 Score: 84.7 bits (208), Expect = 1.5e-16
Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 0


Query: 12  LLRNPLSIKSRSQAQQLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTIHFPP 71
           LL +    +S  +  QLH  V+K   S +    + L++ YS   L  DS R F       
Sbjct: 21  LLLSSARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKS 80

Query: 72  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 131
           +  W S+I C+  + LP  SL     M+A  L PD +V PS  KSCA+L   ++G S+H 
Sbjct: 81  STTWSSIISCFAQNELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDIGRSVHC 140

Query: 132 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTER 178
             ++ G D D++ G++L++MY+K         + + A ++FDEM +R
Sbjct: 141 LSMKTGYDADVFVGSSLVDMYAKC-------GEIVYARKMFDEMPQR 180

[Close]

BLAST of CsaV3_6G051140 vs. TAIR 10
Match: AT2G40720.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-15
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 44  SLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLY 103
           S L+ +YS   L   +L++F ++     +AW S+I CY+ + LP  S+  F  ML+ G++
Sbjct: 515 SSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIF 574

Query: 104 PDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRF 157
           PD     SVL + +    L  G+SLHGY +R+G+  D +  NAL++MY K  F
Sbjct: 575 PDSVSITSVLVAISSTASLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGF 627

The following BLAST results are available for this feature:

BLAST of CsaV3_6G051140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647725.1	6.7e-181	100.00	hypothetical protein Csa_003800 [Cucumis sativus]	[more]
XP_011658262.1	1.3e-102	99.49	putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus]	[more]
XP_008439708.1	6.7e-96	92.82	PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Cucum...	[more]
XP_038891906.1	3.1e-93	89.85	putative pentatricopeptide repeat-containing protein At3g23330 [Benincasa hispid...	[more]
XP_022978655.1	5.1e-88	88.02	putative pentatricopeptide repeat-containing protein At3g23330 [Cucurbita maxima...	[more]

BLAST of CsaV3_6G051140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LW63	3.0e-51	52.00	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]
Q9LW64	6.8e-43	91.76	Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P...	[more]
P58728	6.8e-43	91.76	Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P...	[more]
Q9VHI4	4.7e-28	65.06	Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV...	[more]
Q56K13	2.0e-26	59.52	Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1	[more]

BLAST of CsaV3_6G051140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHY2	6.1e-103	99.49	DYW_deaminase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G5203...	[more]
A0A5D3CSN4	3.2e-96	92.82	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
E5GC23	3.2e-96	92.82	DYW_deaminase domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
A0A1S3AYZ6	3.2e-96	92.82	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucumis melo O...	[more]
A0A6J1ING2	2.5e-88	88.02	putative pentatricopeptide repeat-containing protein At3g23330 OS=Cucurbita maxi...	[more]

BLAST of CsaV3_6G051140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23330.1	2.2e-52	52.00	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G23325.1	4.8e-44	91.76	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT4G14342.1	4.8e-44	91.76	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT5G52630.1	1.5e-16	32.93	mitochondrial RNAediting factor 1	[more]
AT2G40720.1	2.8e-15	37.17	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 73..101 e-value: 0.61 score: 10.5
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 241..318 e-value: 4.3E-35 score: 119.7
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PANTHER	PTHR20978	SPLICING FACTOR 3B SUBUNIT 5	coord: 195..310
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 8..197 e-value: 1.6E-11 score: 46.2
None	No IPR available	PANTHER	PTHR20978:SF3	SPLICING FACTOR SUBUNIT	coord: 195..310

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G051140.1	CsaV3_6G051140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding