CsaV3_6G050910 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G050910
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 29639892 .. 29640227 (+)
RNA-Seq Expression	CsaV3_6G050910
Synteny	CsaV3_6G050910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATTGATGTAGATCGAATGACAGTGAGGGAAACGGATTGGATTGGTCCAGGTGGATTGGATGGTATCATATTTTGAGAAATAAAGGAGAAAGATTAATGAGTAGTGGTAGTGTGGAAGAGAATGACGTTATCGTTATTTTAAATATTTGAATTCGAAGGGATTTGGTTCGATCGGATGTGGGTGACAGAAGGTGGGTTACCGACTCACCGTCACCCACGTTATCCCACCTTCTCTAATTTACAATCCCAGTTCGAGTTGGGCCTTGGGCCTGAGCCTGAGCCTGGATCTCCACCTACCTCTTCTAAGGATCCGACTCAAATCACCCTATAA

mRNA sequence

ATGACGATTGATGTAGATCGAATGACAGTGAGGGAAACGGATTGGATTGGTCCAGGTGGATTGGATGGGATTTGGTTCGATCGGATGTGGGTGACAGAAGGTGGGTTACCGACTCACCGTCACCCACGTTATCCCACCTTCTCTAATTTACAATCCCAGTTCGAGTTGGGCCTTGGGCCTGAGCCTGAGCCTGGATCTCCACCTACCTCTTCTAAGGATCCGACTCAAATCACCCTATAA

Coding sequence (CDS)

ATGACGATTGATGTAGATCGAATGACAGTGAGGGAAACGGATTGGATTGGTCCAGGTGGATTGGATGGGATTTGGTTCGATCGGATGTGGGTGACAGAAGGTGGGTTACCGACTCACCGTCACCCACGTTATCCCACCTTCTCTAATTTACAATCCCAGTTCGAGTTGGGCCTTGGGCCTGAGCCTGAGCCTGGATCTCCACCTACCTCTTCTAAGGATCCGACTCAAATCACCCTATAA

Protein sequence

MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGPEPEPGSPPTSSKDPTQITL*

Homology

[Close]

BLAST of CsaV3_6G050910 vs. NCBI nr
Match: KGN49307.1 (hypothetical protein Csa_003295 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 7.5e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGP 60
          MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGP
Sbjct: 1  MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGP 60

Query: 61 EPEPGSPPTSSKDPTQITL 80
          EPEPGSPPTSSKDPTQITL
Sbjct: 61 EPEPGSPPTSSKDPTQITL 79

[Close]

BLAST of CsaV3_6G050910 vs. ExPASy TrEMBL
Match: A0A0A0KLP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519590 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.6e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGP 60
          MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGP
Sbjct: 1  MTIDVDRMTVRETDWIGPGGLDGIWFDRMWVTEGGLPTHRHPRYPTFSNLQSQFELGLGP 60

Query: 61 EPEPGSPPTSSKDPTQITL 80
          EPEPGSPPTSSKDPTQITL
Sbjct: 61 EPEPGSPPTSSKDPTQITL 79

The following BLAST results are available for this feature:

BLAST of CsaV3_6G050910 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49307.1	7.5e-41	100.00	hypothetical protein Csa_003295 [Cucumis sativus]	[more]

BLAST of CsaV3_6G050910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G050910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLP4	3.6e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519590 PE=4 SV=1	[more]

BLAST of CsaV3_6G050910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G050910.1	CsaV3_6G050910.1	mRNA