CsaV3_6G050200 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G050200
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	B3 domain-containing transcription factor LEC2
Location	chr6: 29283932 .. 29284321 (-)
RNA-Seq Expression	CsaV3_6G050200
Synteny	CsaV3_6G050200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAGATTACAAGCAGAAGCAGCAGCAACAATTTAGTCTGTCGTCAAACATAGAGGATCAGGTGAAAGACGAAGAAGAAGATGCTTCTTTAGCTTTGTTAATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCACCACCTTTTTCACTGCTAATCCACCTATCAATACCATGATTAATTCTACAAATCATATTAATTATAAGGAACAACTAATATTAGATGATTTCCAAGGGATTAATAATATTAATAATGATATCAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCACCAGTAATAATGGCACAGCCTGA

mRNA sequence

ATGGAAGAAGATTACAAGCAGAAGCAGCAGCAACAATTTAGTCTGTCGTCAAACATAGAGGATCAGGTGAAAGACGAAGAAGAAGATGCTTCTTTAGCTTTGTTAATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCACCACCTTTTTCACTGCTAATCCACCTATCAATACCATGATTAATTCTACAAATCATATTAATTATAAGGAACAACTAATATTAGATGATTTCCAAGGGATTAATAATATTAATAATGATATCAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCACCAGTAATAATGGCACAGCCTGA

Coding sequence (CDS)

ATGGAAGAAGATTACAAGCAGAAGCAGCAGCAACAATTTAGTCTGTCGTCAAACATAGAGGATCAGGTGAAAGACGAAGAAGAAGATGCTTCTTTAGCTTTGTTAATCGAAGAGCTTAAACACAAAGCTGAAGACCACCACAGCCATCCCACCACCTTTTTCACTGCTAATCCACCTATCAATACCATGATTAATTCTACAAATCATATTAATTATAAGGAACAACTAATATTAGATGATTTCCAAGGGATTAATAATATTAATAATGATATCAATAATGGTAATGTGGGGTTTGAAGATTGCTTTGGAGGCCTTGATACTCTTCCTGAAGTCAGTGGATTCAAGTTCCCTCTTTTTGACTATTTCACCAGTAATAATGGCACAGCCTGA

Protein sequence

MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPINTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFDYFTSNNGTA*

Homology

[Close]

BLAST of CsaV3_6G050200 vs. NCBI nr
Match: KGN49235.1 (hypothetical protein Csa_002728 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60
           MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI
Sbjct: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60

Query: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFTSNNGTA 130
           YFTSNNGTA
Sbjct: 121 YFTSNNGTA 129

[Close]

BLAST of CsaV3_6G050200 vs. NCBI nr
Match: XP_011658520.1 (B3 domain-containing transcription factor LEC2 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60
           MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI
Sbjct: 287 MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 346

Query: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 347 NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 406

Query: 121 YFTSNNGTA 130
           YFTSNNGTA
Sbjct: 407 YFTSNNGTA 415

[Close]

BLAST of CsaV3_6G050200 vs. NCBI nr
Match: KAA0052680.1 (B3 domain-containing transcription factor LEC2 [Cucumis melo var. makuwa] >TYK13144.1 B3 domain-containing transcription factor LEC2 [Cucumis melo var. makuwa])

HSP 1 Score: 209.9 bits (533), Expect = 1.3e-50
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60

Query: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQG   INND NNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NAMIHSTNNINYKEQVILDDFQG---INNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFTSNNGT 129
           YF  NNGT
Sbjct: 121 YFPGNNGT 125

[Close]

BLAST of CsaV3_6G050200 vs. NCBI nr
Match: KAG6604454.1 (B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 8.2e-13
Identity = 57/135 (42.22%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 23  VKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPINTMINSTNHINYKEQLILDD-- 82
           +KDEEEDASLA+LIEELKHK ED         + +   ++  NS++H N    L+  D  
Sbjct: 316 IKDEEEDASLAMLIEELKHKPEDEDRR----LSCSTSTSSSSNSSHHHNNNNALMASDSY 375

Query: 83  --------------------FQGINNINNDINNGNV----------GFEDCFGGLDTLPE 126
                               +  INN NN   NGN           G EDCF GLDTLPE
Sbjct: 376 LSTTPQPSSSDMMGAAAKGIYNSINN-NNKKKNGNKEGGEDLQAGNGLEDCFRGLDTLPE 435

[Close]

BLAST of CsaV3_6G050200 vs. NCBI nr
Match: XP_022978701.1 (B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP_022978702.1 B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP_022978703.1 B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 56/130 (43.08%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 23  VKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPINTMINSTNHINYKEQLILDDFQ 82
           +KDEEEDASLA+LIEELKHK ED    P +  T+    N+  N+ N+        L   Q
Sbjct: 167 IKDEEEDASLAMLIEELKHKPED-EDRPLSCSTSTSSSNSSSNNNNNAVMASDSYLSTTQ 226

Query: 83  ---------------GINNINNDINNGN------------VGFEDCFGGLDTLPEVSGFK 126
                          GI+N NN+    N             G EDCF GLDTLPEVSGFK
Sbjct: 227 QQPSSSNMMGAAAAKGIHNSNNNKKKKNGSKEGGEDLQAVNGLEDCFRGLDTLPEVSGFK 286

[Close]

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL
Match: A0A0A0KHN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517430 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.5e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60
           MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI
Sbjct: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60

Query: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFTSNNGTA 130
           YFTSNNGTA
Sbjct: 121 YFTSNNGTA 129

[Close]

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL
Match: A0A5A7UBY7 (B3 domain-containing transcription factor LEC2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G007550 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 6.3e-51
Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0


Query: 1   MEEDYKQKQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPI 60
           MEE+YKQKQ QQFSLSSNI+DQVKDEEEDASLALLIEELKHKAEDHHSHP  +F  N P 
Sbjct: 1   MEENYKQKQLQQFSLSSNIDDQVKDEEEDASLALLIEELKHKAEDHHSHPPPYFATNLPN 60

Query: 61  NTMINSTNHINYKEQLILDDFQGINNINNDINNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120
           N MI+STN+INYKEQ+ILDDFQG   INND NNGNVGFEDCFGGLDTLPEVSGFKFPLFD
Sbjct: 61  NAMIHSTNNINYKEQVILDDFQG---INNDNNNGNVGFEDCFGGLDTLPEVSGFKFPLFD 120

Query: 121 YFTSNNGT 129
           YF  NNGT
Sbjct: 121 YFPGNNGT 125

[Close]

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL
Match: A0A6J1IU08 (B3 domain-containing transcription factor LEC2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-13
Identity = 56/130 (43.08%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 23  VKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPINTMINSTNHINYKEQLILDDFQ 82
           +KDEEEDASLA+LIEELKHK ED    P +  T+    N+  N+ N+        L   Q
Sbjct: 167 IKDEEEDASLAMLIEELKHKPED-EDRPLSCSTSTSSSNSSSNNNNNAVMASDSYLSTTQ 226

Query: 83  ---------------GINNINNDINNGN------------VGFEDCFGGLDTLPEVSGFK 126
                          GI+N NN+    N             G EDCF GLDTLPEVSGFK
Sbjct: 227 QQPSSSNMMGAAAAKGIHNSNNNKKKKNGSKEGGEDLQAVNGLEDCFRGLDTLPEVSGFK 286

[Close]

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL
Match: A0A6J1IQY4 (B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478581 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-13
Identity = 56/130 (43.08%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 23  VKDEEEDASLALLIEELKHKAEDHHSHPTTFFTANPPINTMINSTNHINYKEQLILDDFQ 82
           +KDEEEDASLA+LIEELKHK ED    P +  T+    N+  N+ N+        L   Q
Sbjct: 318 IKDEEEDASLAMLIEELKHKPED-EDRPLSCSTSTSSSNSSSNNNNNAVMASDSYLSTTQ 377

Query: 83  ---------------GINNINNDINNGN------------VGFEDCFGGLDTLPEVSGFK 126
                          GI+N NN+    N             G EDCF GLDTLPEVSGFK
Sbjct: 378 QQPSSSNMMGAAAAKGIHNSNNNKKKKNGSKEGGEDLQAVNGLEDCFRGLDTLPEVSGFK 437

[Close]

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL
Match: A0A6J1EJR4 (B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=LOC111433235 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 4.4e-12
Identity = 60/144 (41.67%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 8   KQQQQFSLSSNIEDQVKDEEEDASLALLIEELKHKAEDH--------HSHPTTFFTANPP 67
           K  QQ S ++     +KDEEEDASLA+LIEELKHK ED          +  ++  + N  
Sbjct: 312 KNNQQCSFTNMC---IKDEEEDASLAMLIEELKHKPEDEDRPLSCSSSTSSSSNSSHNNN 371

Query: 68  INTMINSTNHINYKEQLILDDFQG------INNINN------------DINNGNVGFEDC 126
            N ++ S ++++   Q    D  G       N+INN            D+  GN G EDC
Sbjct: 372 NNALMASDSYLSTTPQPSSSDMMGAAAKGIYNSINNNKKKNGNKEGGEDLQAGN-GLEDC 431

The following BLAST results are available for this feature:

BLAST of CsaV3_6G050200 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49235.1	3.2e-65	100.00	hypothetical protein Csa_002728 [Cucumis sativus]	[more]
XP_011658520.1	3.2e-65	100.00	B3 domain-containing transcription factor LEC2 [Cucumis sativus]	[more]
KAA0052680.1	1.3e-50	84.38	B3 domain-containing transcription factor LEC2 [Cucumis melo var. makuwa] >TYK13...	[more]
KAG6604454.1	8.2e-13	42.22	B3 domain-containing transcription factor LEC2, partial [Cucurbita argyrosperma ...	[more]
XP_022978701.1	1.8e-12	43.08	B3 domain-containing transcription factor LEC2 isoform X2 [Cucurbita maxima] >XP...	[more]

BLAST of CsaV3_6G050200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHN2	1.5e-65	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517430 PE=4 SV=1	[more]
A0A5A7UBY7	6.3e-51	84.38	B3 domain-containing transcription factor LEC2 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1IU08	8.9e-13	43.08	B3 domain-containing transcription factor LEC2 isoform X2 OS=Cucurbita maxima OX...	[more]
A0A6J1IQY4	8.9e-13	43.08	B3 domain-containing transcription factor LEC2 isoform X1 OS=Cucurbita maxima OX...	[more]
A0A6J1EJR4	4.4e-12	41.67	B3 domain-containing transcription factor LEC2 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CsaV3_6G050200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G050200.1	CsaV3_6G050200.1	mRNA