CsaV3_6G049900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G049900
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 29102474 .. 29104897 (-)
RNA-Seq ExpressionCsaV3_6G049900
SyntenyCsaV3_6G049900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAGGTTAGCCTGCTTTTCCGATGTTTTTATTTATTTATTTTTTATTTGTGGATTTGCTTTACTAGACATCTGTTTTTTACCACTGTCATATTACAAGAAAATACGAAACTATGGTCGTCCATGAGTATTTATTTTCTTTTTGAATGAAAGAACAAAGTGGCCTAAAAAAACCATCATGAACCAAAAAGTCGCCACTAGAACCACAATTACTGAACAGTTCTGCAATTGTGGGTCATCACAAAAAATATAATACAAATTGTTGCAAGAAATACAAAGAGAGTATTAAAGTGAACTTCTCATCACACTTCCCCCAAGAACTACCCTTTCCATGAAAAGCTCGTCTGTTCTTCTCCCACCTAATATTCCATAACACAGTGAAGAAACCAATATGTCATAGGATTCTTTACCTCTCTTCCGAAAGCAAGGAGGCAACAATACCTCTTTCGGGCGTAGGACACTCTCAGTCTCAGCCAAAACAACTTGTAATGACTGAAAAAAAAACCTAAAATGGACTTTCCTGAAAAAGGGCAAAGCAGAAAGATTTTATTTTAGTTTGACTGGATTCTCTTCGTCTCATTCTACATTTGCTGTATCTACGAAATACTTCGATGTGGCTATGCTTCATTCTTTGGCAGATATAAGTTATCTGTTGCTTTATAATTGCGGGAAATAGGGATATATGATGGAAAATCATTCTCTTAATTTCAAAGTTTAACAAATTTACCGAGTAACGAGGGAATGATTCCCTTTGTGTGGGCTCAATCCTCAAACTTTGGCACCGTTCCCTTTCGAGAATGTTGAATAATTCTATTATCGCCCCTTAATTTTACTATGCTCTACCGCTACCCTTTTTTTTGGCTTTTTGTTTCTCTTTTCTCTGCAGGTTCCATACAAGTTTGATATTGATTCTCTTCACAGATATTAGCAGATCATATCTGTTTTGATCTTCTTACATCAATGCAATATCGAAACATTTTTTTTCCCATTCCTTATTCTGAATCTCTGATTCATTCTCATCCACATTCCTTACACCCCTCCTGCATTCTACTATTTTACTAAAGTATAATTCACCCCCGAAGTAATGGATGTCTGAATATGGCCAATATTATATGCCTGTATTGTTCTAGTTTCACTTCCTTGTGCTAACATGGAAAATACAGTCAAGATTATTTTAACTTTTTAGCTCATCAATTTAACATGGTGATTGAATTCGCATTAAAATTAGAACCTCTAAGAAACTTGAAGATGGAATTCAAATTGAATCTCAGTTTCATGATACCATTTTACAAATATCTTTTGCTTTTCTGAACCTTCCTGATAAAGTCGACCATTTAATACTAAGTTGCAAATGGTGAATTATGCCCCATAGGAAGATTTGTTTAGTGACTTCTCAGTAATTTTGGCATATGATTTGATTCAACTTCAAATTCAAAACTGTGCGAACTCTGTTCATCGCTAGGTTTGAAGAGGGGCCGGACGGACCCTAAGTTATGACAAAGATTTCAGGCTTTTTCTGAGCAGAACAGTACTGTTAACTTAAATAATTATGCCAGAATGAGTCTAATTTAACTAGTTGAAAATTTTAATTATCCGTCTCATTAACCCAAAATAATTGTATTTCTACATTCACTTTCTTTCCAACTCTATCACTTGTTTGCATCTTTAAAACTTTGCAGAAGATTCAATTTCAGCTGTTAGAAAATAACCGAAGTGGGGCTGTCTGGAAAGTAAATGAAATAGATACTAAACACTTGGATTGCCGTATGGGTAGATGAAAGAACCTAAATGAAGGAGTGGATTGATCAAGGATGACAAAGGAGACCTTAGGATCAGTTTCTCTCAAAACAAAACCAAGACCAAAATCGATTAATAATTGTAGATCATATCATAAGCATAGATATACAGAAATGGAACTAGATGGCTTCTAATCAAGAAAGAAGAAGAAAATGAACAGGCAAAGTGTCAATCTGCCTATCAAGAAAATTCACTCAGATTTCACCAAAAGTACAAAAACCCACATGGCAGAGTGATTCAAATTTGAACTAGCTTGAAATTTAGCATGTGTTTCACTTGCGACAGCTTCAAATTTGCATAATCCATCGTCAAAATTTAGAGCGTAGCTGCAAGGATCATACTGAAACCTGAACTGCTGCTTGCTTCCGTTCTTGATGGCTTTCTTCATCGCAGCTCTCATCCTCCAGAACAGTTTCTTGAATTGCTTTCTACTGTAAGTATTCATCCATTCTATGCCTCCCACAAATCCCATTTATACAACGTCAACCTCTAAACTCTAAAATTTCTGCTGCTAATCCCAAAATGTCTTGAAATGAAGAGCAGGTTGTGATAGTTTCTGGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACAATAGCAGTTGCAATCTGA

mRNA sequence

ATGCACAAGAAGATTCAATTTCAGCTGTTAGAAAATAACCGAAGTGGGGCTGTCTGGAAAAGCGTAGCTGCAAGGATCATACTGAAACCTGAACTGCTGCTTGCTTCCGTTCTTGATGGCTTTCTTCATCGCAGCTCTCATCCTCCAGAACAGTTTCTTGAATTGCTTTCTACTGTTGTGATAGTTTCTGGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACAATAGCAGTTGCAATCTGA

Coding sequence (CDS)

ATGCACAAGAAGATTCAATTTCAGCTGTTAGAAAATAACCGAAGTGGGGCTGTCTGGAAAAGCGTAGCTGCAAGGATCATACTGAAACCTGAACTGCTGCTTGCTTCCGTTCTTGATGGCTTTCTTCATCGCAGCTCTCATCCTCCAGAACAGTTTCTTGAATTGCTTTCTACTGTTGTGATAGTTTCTGGGTATTTGAGGAAGATTATAAAGGATTCACAGACACAGAGACAAACAATAGCAGTTGCAATCTGA

Protein sequence

MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVVIVSGYLRKIIKDSQTQRQTIAVAI*
Homology
[Close]
BLAST of CsaV3_6G049900 vs. NCBI nr
Match: KGN49204.1 (hypothetical protein Csa_003775 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 3.1e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVV 60
          MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVV
Sbjct: 1  MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVV 60

Query: 61 IVSGYLRKIIKDSQTQRQTIAVAI 85
          IVSGYLRKIIKDSQTQRQTIAVAI
Sbjct: 61 IVSGYLRKIIKDSQTQRQTIAVAI 84

[Close]
BLAST of CsaV3_6G049900 vs. ExPASy TrEMBL
Match: A0A0A0KK41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517120 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 1.5e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 1  MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVV 60
          MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVV
Sbjct: 1  MHKKIQFQLLENNRSGAVWKSVAARIILKPELLLASVLDGFLHRSSHPPEQFLELLSTVV 60

Query: 61 IVSGYLRKIIKDSQTQRQTIAVAI 85
          IVSGYLRKIIKDSQTQRQTIAVAI
Sbjct: 61 IVSGYLRKIIKDSQTQRQTIAVAI 84

The following BLAST results are available for this feature:
BLAST of CsaV3_6G049900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49204.13.1e-37100.00hypothetical protein Csa_003775 [Cucumis sativus][more]
BLAST of CsaV3_6G049900 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G049900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK411.5e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G517120 PE=4 SV=1[more]
BLAST of CsaV3_6G049900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G049900.1CsaV3_6G049900.1mRNA