CsaV3_6G049780 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G049780
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 29038364 .. 29038522 (+)
RNA-Seq ExpressionCsaV3_6G049780
SyntenyCsaV3_6G049780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG

mRNA sequence

ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG

Coding sequence (CDS)

ATGGCCGCTTCCAGAACCCACTACATCACCGCCGCCGCCTACTCTCCCAGGGCTTCTGCCCGCCCCTTTCCCAAGCGAGGTCAGGTCAAATTGGGGATTATGGTGGGTCTTGCCCACACCGTTGCTTCAATTTTCTCACCCACCACTCGTCGGACTTAG

Protein sequence

MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT*
Homology
BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KGN49191.1 (hypothetical protein Csa_004352 [Cucumis sativus])

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT
Sbjct: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 52

BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KAA0052718.1 (hypothetical protein E6C27_scaffold120G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.2e-15
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MA  R+ YIT AAYSPRASARP PKRGQVKLGIMVGLAHTVASIFSPTTRRT
Sbjct: 30 MAGHRSDYITGAAYSPRASARPIPKRGQVKLGIMVGLAHTVASIFSPTTRRT 81

BLAST of CsaV3_6G049780 vs. NCBI nr
Match: XP_022977341.1 (uncharacterized protein LOC111477692 [Cucurbita maxima])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 1   MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
           M  SR+  I+ A YSPR+S RP PKRGQVKLGIMVGLAH+VASIFSPTTR
Sbjct: 56  MGGSRSDDISGATYSPRSSGRPIPKRGQVKLGIMVGLAHSVASIFSPTTR 105

BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KAG2689810.1 (hypothetical protein I3760_09G156900 [Carya illinoinensis] >KAG6696674.1 hypothetical protein I3842_09G159900 [Carya illinoinensis])

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 0

Query: 2  AASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
          A +R+  I   ++S R S RP PKRGQVKLGI+VGLAH+VASIFSP  R
Sbjct: 3  AGARSGMINGGSFSGRFSGRPIPKRGQVKLGIVVGLAHSVASIFSPRRR 51

BLAST of CsaV3_6G049780 vs. NCBI nr
Match: KAG6642713.1 (hypothetical protein CIPAW_09G159600 [Carya illinoinensis] >KAG6696673.1 hypothetical protein I3842_09G159800 [Carya illinoinensis])

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 0

Query: 2  AASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
          A +R+  I   ++S   S RP PKRGQVKLGI+VGLAH+VASIFSP  R
Sbjct: 3  AGARSGMINGGSFSGSFSGRPIPKRGQVKLGIVVGLAHSVASIFSPRRR 51

BLAST of CsaV3_6G049780 vs. ExPASy TrEMBL
Match: A0A0A0KN78 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.2e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT
Sbjct: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 52

BLAST of CsaV3_6G049780 vs. ExPASy TrEMBL
Match: A0A5A7UBX7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003310 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.0e-16
Identity = 46/52 (88.46%), Postives = 47/52 (90.38%), Query Frame = 0

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRRT 53
          MA  R+ YIT AAYSPRASARP PKRGQVKLGIMVGLAHTVASIFSPTTRRT
Sbjct: 30 MAGHRSDYITGAAYSPRASARPIPKRGQVKLGIMVGLAHTVASIFSPTTRRT 81

BLAST of CsaV3_6G049780 vs. ExPASy TrEMBL
Match: A0A6J1IJM3 (uncharacterized protein LOC111477692 OS=Cucurbita maxima OX=3661 GN=LOC111477692 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = 0

Query: 1   MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTR 51
           M  SR+  I+ A YSPR+S RP PKRGQVKLGIMVGLAH+VASIFSPTTR
Sbjct: 56  MGGSRSDDISGATYSPRSSGRPIPKRGQVKLGIMVGLAHSVASIFSPTTR 105

BLAST of CsaV3_6G049780 vs. ExPASy TrEMBL
Match: A0A5J5VQ30 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G172400v1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRR 52
          MA +R   I    YSPR + RP P+RGQVK+ I++G+AH+ ASIFS ++RR
Sbjct: 1  MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

BLAST of CsaV3_6G049780 vs. ExPASy TrEMBL
Match: A0A5D2UXY7 (Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G178200v1 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.5e-06
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 0

Query: 1  MAASRTHYITAAAYSPRASARPFPKRGQVKLGIMVGLAHTVASIFSPTTRR 52
          MA +R   I    YSPR + RP P+RGQVK+ I++G+AH+ ASIFS ++RR
Sbjct: 1  MAGARGEMINGGNYSPRIAGRPIPRRGQVKIAILMGIAHSFASIFSASSRR 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49191.12.4e-19100.00hypothetical protein Csa_004352 [Cucumis sativus][more]
KAA0052718.11.2e-1588.46hypothetical protein E6C27_scaffold120G003310 [Cucumis melo var. makuwa][more]
XP_022977341.13.1e-1176.00uncharacterized protein LOC111477692 [Cucurbita maxima][more]
KAG2689810.11.0e-0663.27hypothetical protein I3760_09G156900 [Carya illinoinensis] >KAG6696674.1 hypothe... [more]
KAG6642713.15.2e-0661.22hypothetical protein CIPAW_09G159600 [Carya illinoinensis] >KAG6696673.1 hypothe... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KN781.2e-19100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G516990 PE=4 SV=1[more]
A0A5A7UBX76.0e-1688.46Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1IJM31.5e-1176.00uncharacterized protein LOC111477692 OS=Cucurbita maxima OX=3661 GN=LOC111477692... [more]
A0A5J5VQ302.5e-0652.94Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G172400v1 PE... [more]
A0A5D2UXY72.5e-0652.94Uncharacterized protein OS=Gossypium mustelinum OX=34275 GN=E1A91_D05G178200v1 P... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36615PROTEIN, PUTATIVE-RELATEDcoord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G049780.1CsaV3_6G049780.1mRNA