CsaV3_6G049680 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G049680
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionLysM domain-containing protein
Locationchr6: 28987585 .. 28988408 (+)
RNA-Seq ExpressionCsaV3_6G049680
SyntenyCsaV3_6G049680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTAGGTTTTCCTTAACCATTCATTCTAAAATATATATAATTTCATTATTTGTATGCTCTGTTTGGAATTATCGACTAATTACTTCAAAGAATAAGAAATCTTTGGCACTTGAAAAAGTCATTTCAATTTAAGATCGTTAATACATAGGAATCAATTATATTATTGGTAAGTGATATGGAGGAAATAGTAGCTGTATCCAAGTCATTTTGAGTTGATTTGAAACGTATTCGGGTGATTTTCTTTCCATTTAAATTTATGTTGAAAGAGAAATAAGCATGTTGAGACTTATTGAAATTGTTGATGCTCATTTTGTGAGTTTGGAAATGCAGGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGAACTTAATATGATTTCCACCTGTTTGTCTTCAATAATATTTTAATTTAAGCACTCAAAAACCCATTCTCATTTGATAATAAAACCCAAATCTTTCTTATGCTGATTCCTAATTATTGTATTTTCACCGTGTGTTTGTTGTATGTTTGGGTTAATTAGTTCTATGTAATCTCAATCCTAATCTTAAATTTATTGGTTAAGATATTTCAT

mRNA sequence

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

Coding sequence (CDS)

ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA

Protein sequence

MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT*
Homology
BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0

Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKG     EVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKG-----EVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 90

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
            FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0

Query: 1  MAKATI--SIAIFLLASSLLIFNISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCF 60
          MAKA I  S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCF 60

Query: 61 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 DLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KAF7847920.1 (hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF8031399.1 hypothetical protein BT93_D0563 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0

Query: 3   KATISIAIFLLASSLLIFNISVKGRNLFRE-VVVEEASLE----LQCNKAYGVKSGDTCF 62
           K T++I +FL+ S  L F++S   R L     +  +A+L     + C   YGVKSGDTCF
Sbjct: 7   KMTMAINLFLVLS--LFFSVSTAERKLLTSGALPTQATLSAPSLIYCASVYGVKSGDTCF 66

Query: 63  AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           A+AQ F LT   FD INPNLNC+ALFV QWLCV A +
Sbjct: 67  AVAQTFNLTALSFDKINPNLNCNALFVGQWLCVKAVI 101

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0

Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA
Sbjct: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
          QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT
Sbjct: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 95

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33
Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0

Query: 1  MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIA 60
          MAKATI IAIFLLA  LLIF+ISVKG     EVV  E SLELQCNKAYGVKSGDTCFA+A
Sbjct: 1  MAKATIPIAIFLLAFFLLIFSISVKG-----EVVAAEPSLELQCNKAYGVKSGDTCFALA 60

Query: 61 QAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT 96
            FKL+TDHF+FINPNLNCSALFV QWLCVNAFLT
Sbjct: 61 HTFKLSTDHFNFINPNLNCSALFVGQWLCVNAFLT 90

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24
Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0

Query: 1  MAKATI--SIAIFLLASSLLIFNISVKGRNL-FREVVVEEASLELQCNKAYGVKSGDTCF 60
          MAKA I  S  IFLLA SLLIF+ISV+ R+  FR VV  EA LELQCNK YGVK+GDTCF
Sbjct: 1  MAKAMISSSFPIFLLAFSLLIFSISVETRSTPFRGVV--EAGLELQCNKVYGVKNGDTCF 60

Query: 61 AIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           + Q FK+TT HF FINPNLNC+ LF+ QWLC++A L
Sbjct: 61 DLEQKFKITTPHFSFINPNLNCTDLFIGQWLCLDAVL 95

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A6J5X2L6 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24552 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0

Query: 8  IAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTT 67
          I + L+ S LL+  ++ +G+ L   ++   A+  L+C  AYGVK+GDTCF IAQAF L T
Sbjct: 5  INLVLMLSLLLV--VASEGQFLANGILKPPAT--LKCESAYGVKTGDTCFEIAQAFNLPT 64

Query: 68 DHFDFINPNLNCSALFVSQWLCVNAFLT 96
          + FD INPNLNC+ALFV QW+C+N  L+
Sbjct: 65 ELFDSINPNLNCTALFVGQWVCLNGTLS 88

BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A803NLT8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14
Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 0

Query: 1   MAKATISIAIFLLASSLLIFNISVKGRNLF--------REVVVEEASLELQCNKAYGVKS 60
           MA + I     +   SLL F +S+    LF        + V V        CN  YGVK 
Sbjct: 1   MANSNIKTLCLVFMISLL-FAVSMAENRLFGRFASGHGKAVPVLPLPSTPVCNSVYGVKD 60

Query: 61  GDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFL 95
           GDTCFA+ Q FKLTTD F  INPNLNC+ALFVSQWLCV+  L
Sbjct: 61  GDTCFAVTQMFKLTTDFFTSINPNLNCAALFVSQWLCVDGTL 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49182.12.3e-44100.00hypothetical protein Csa_004378 [Cucumis sativus][more]
XP_031742455.11.7e-3994.74lysM domain-containing protein ARB_00327-like [Cucumis sativus][more]
XP_016899229.12.0e-3281.05PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo][more]
KGN49183.11.7e-2367.01hypothetical protein Csa_003390 [Cucumis sativus][more]
KAF7847920.11.9e-1450.52hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF80313... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KLD21.1e-44100.00LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 S... [more]
A0A1S4DTB49.7e-3381.05lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC1079... [more]
A0A0A0KHZ88.3e-2467.01LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 S... [more]
A0A6J5X2L63.5e-1451.14LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24... [more]
A0A803NLT84.5e-1449.02Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 47..91
e-value: 6.4E-5
score: 32.3
IPR018392LysM domainPFAMPF01476LysMcoord: 48..90
e-value: 1.4E-6
score: 28.3
IPR018392LysM domainPROSITEPS51782LYSMcoord: 46..90
score: 12.776305
IPR018392LysM domainCDDcd00118LysMcoord: 48..90
e-value: 3.83743E-7
score: 40.9317
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 44..90
e-value: 1.3E-16
score: 62.5
IPR036779LysM domain superfamilySUPERFAMILY54106LysM domaincoord: 44..90
NoneNo IPR availablePANTHERPTHR34997AM15coord: 2..94
NoneNo IPR availablePANTHERPTHR34997:SF13LYSM DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 2..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G049680.1CsaV3_6G049680.1mRNA