CsaV3_6G049680 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTAGGTTTTCCTTAACCATTCATTCTAAAATATATATAATTTCATTATTTGTATGCTCTGTTTGGAATTATCGACTAATTACTTCAAAGAATAAGAAATCTTTGGCACTTGAAAAAGTCATTTCAATTTAAGATCGTTAATACATAGGAATCAATTATATTATTGGTAAGTGATATGGAGGAAATAGTAGCTGTATCCAAGTCATTTTGAGTTGATTTGAAACGTATTCGGGTGATTTTCTTTCCATTTAAATTTATGTTGAAAGAGAAATAAGCATGTTGAGACTTATTGAAATTGTTGATGCTCATTTTGTGAGTTTGGAAATGCAGGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGAACTTAATATGATTTCCACCTGTTTGTCTTCAATAATATTTTAATTTAAGCACTCAAAAACCCATTCTCATTTGATAATAAAACCCAAATCTTTCTTATGCTGATTCCTAATTATTGTATTTTCACCGTGTGTTTGTTGTATGTTTGGGTTAATTAGTTCTATGTAATCTCAATCCTAATCTTAAATTTATTGGTTAAGATATTTCAT ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA ATGGCCAAGGCTACCATCTCAATTGCCATTTTCCTATTGGCTTCCTCTCTTCTCATTTTCAATATTTCTGTAAAAGGTCGTAACTTGTTCCGTGAGGTTGTTGTGGAAGAAGCAAGCTTGGAGTTACAATGCAACAAAGCTTATGGAGTAAAGAGTGGAGACACATGCTTTGCTATTGCTCAGGCATTCAAGCTCACCACAGACCACTTCGATTTTATCAATCCAAACCTCAATTGCTCTGCCCTCTTTGTTAGCCAGTGGCTCTGTGTCAATGCCTTCCTTACCTGA MAKATISIAIFLLASSLLIFNISVKGRNLFREVVVEEASLELQCNKAYGVKSGDTCFAIAQAFKLTTDHFDFINPNLNCSALFVSQWLCVNAFLT* Homology
BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KGN49182.1 (hypothetical protein Csa_004378 [Cucumis sativus]) HSP 1 Score: 188.7 bits (478), Expect = 2.3e-44 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. NCBI nr
Match: XP_031742455.1 (lysM domain-containing protein ARB_00327-like [Cucumis sativus]) HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39 Identity = 90/95 (94.74%), Postives = 90/95 (94.74%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. NCBI nr
Match: XP_016899229.1 (PREDICTED: lysM domain-containing protein ARB_00327-like [Cucumis melo]) HSP 1 Score: 149.1 bits (375), Expect = 2.0e-32 Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KGN49183.1 (hypothetical protein Csa_003390 [Cucumis sativus]) HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23 Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. NCBI nr
Match: KAF7847920.1 (hypothetical protein BT93_L2446 [Corymbia citriodora subsp. variegata] >KAF8031399.1 hypothetical protein BT93_D0563 [Corymbia citriodora subsp. variegata]) HSP 1 Score: 89.4 bits (220), Expect = 1.9e-14 Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A0A0KLD2 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516900 PE=4 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 1.1e-44 Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A1S4DTB4 (lysM domain-containing protein ARB_00327-like OS=Cucumis melo OX=3656 GN=LOC107990452 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 9.7e-33 Identity = 77/95 (81.05%), Postives = 81/95 (85.26%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A0A0KHZ8 (LysM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516910 PE=4 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 8.3e-24 Identity = 65/97 (67.01%), Postives = 75/97 (77.32%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A6J5X2L6 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS24552 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.5e-14 Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 0
BLAST of CsaV3_6G049680 vs. ExPASy TrEMBL
Match: A0A803NLT8 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 4.5e-14 Identity = 50/102 (49.02%), Postives = 58/102 (56.86%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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