CsaV3_6G049560 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	B box-type domain-containing protein
Location	chr6: 28926804 .. 28927420 (+)
RNA-Seq Expression	CsaV3_6G049560
Synteny	CsaV3_6G049560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTCATTGATTTTGGCCACAAATGATTATCTCAAACACCCACTTGCCCCATCTCCCCCTTTCCATGATATTTCTTCGTCCAAATACAGAGTTAAAAAAAAGAAAAGACAACCCAACTTGATGTCCTTACAGTTATCCCATCTGCACAATATTCTCTTCGTTAATGGCATCTTGTGTTATATAAATAAGTGAGTGATAAGAGGAAACAAAAACTATATTAAAAAAAAAAAAAAGAAGAAGAATGAAGAAGTTGTGCGAGCTGTGTGGGTGTGTGGCTACGGTGATGTGCGAATCAGACGCAGCCATGTTATGTTGGGGTTGCGATTCGAAGGTGCATGGGGCTAACTTTATAGTGGGGAAGCATTTGAGGGTTTTGCTGTGTCATGATTGTCAAGCCCCTACCCCTTGGAATGGTTCTGGCCCTAACCTTGTGGCTACGGTTGCCTTTTGCCACAATTGTGTTCACAAAAATAGGCGGAATAATGGGAGACGGTGTGAGAAAGCTTGTGGGAGCTCTGATGGCGGCGGAACTACTGCACCTAGTGGTTGCGATGACGATGACGATGAGATTGAAAATCAAGTGGTGCCTTGGTTATCTTTGTCCCCCAGCTAA

mRNA sequence

ATGGTGCATGGGGCTAACTTTATAGTGGGGAAGCATTTGAGGGTTTTGCTGTGTCATGATTGTCAAGCCCCTACCCCTTGGAATGGTTCTGGCCCTAACCTTGTGGCTACGGTTGCCTTTTGCCACAATTGTGTTCACAAAAATAGGCGGAATAATGGGAGACGGTGTGAGAAAGCTTGTGGGAGCTCTGATGGCGGCGGAACTACTGCACCTAGTGGTTGCGATGACGATGACGATGAGATTGAAAATCAAGTGGTGCCTTGGTTATCTTTGTCCCCCAGCTAA

Coding sequence (CDS)

ATGGTGCATGGGGCTAACTTTATAGTGGGGAAGCATTTGAGGGTTTTGCTGTGTCATGATTGTCAAGCCCCTACCCCTTGGAATGGTTCTGGCCCTAACCTTGTGGCTACGGTTGCCTTTTGCCACAATTGTGTTCACAAAAATAGGCGGAATAATGGGAGACGGTGTGAGAAAGCTTGTGGGAGCTCTGATGGCGGCGGAACTACTGCACCTAGTGGTTGCGATGACGATGACGATGAGATTGAAAATCAAGTGGTGCCTTGGTTATCTTTGTCCCCCAGCTAA

Protein sequence

MVHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACGSSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS*

Homology

[Close]

BLAST of CsaV3_6G049560 vs. NCBI nr
Match: KAE8647679.1 (hypothetical protein Csa_003671 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 5.6e-51
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0


Query: 1  MVHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKAC 60
          MVHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKAC
Sbjct: 1  MVHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKAC 60

Query: 61 GSSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS 95
          GSSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS
Sbjct: 61 GSSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS 94

[Close]

BLAST of CsaV3_6G049560 vs. NCBI nr
Match: XP_011658518.1 (zinc finger protein CONSTANS-LIKE 2 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 2.1e-50
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG
Sbjct: 10  VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 69

Query: 62  SSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS 95
           SSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS
Sbjct: 70  SSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS 102

[Close]

BLAST of CsaV3_6G049560 vs. NCBI nr
Match: TYK13089.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 185.7 bits (470), Expect = 1.9e-43
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHK R NNGRRCEKACG
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKKRLNNGRRCEKACG 90

Query: 62  SSDGGGTTAPSGC-----DDDDDEIENQVVPWLSLSPS 95
           SS+GG  TAPSGC     DDDDDEIENQVVPWLSLSPS
Sbjct: 91  SSNGG--TAPSGCDDDDDDDDDDEIENQVVPWLSLSPS 126

[Close]

BLAST of CsaV3_6G049560 vs. NCBI nr
Match: XP_008441086.2 (PREDICTED: putative zinc finger protein At1g68190 [Cucumis melo] >KAA0052734.1 putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.2e-42
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHK R NNGRRCEKACG
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKKRLNNGRRCEKACG 90

Query: 62  SSDGGGTTAPSGC------DDDDDEIENQVVPWLSLSPS 95
           SS+GG  TAP GC      DDDDDEIENQVVPWLSLSPS
Sbjct: 91  SSNGG--TAPIGCDDDDDDDDDDDEIENQVVPWLSLSPS 127

[Close]

BLAST of CsaV3_6G049560 vs. NCBI nr
Match: XP_022950367.1 (putative zinc finger protein At1g68190 [Cucurbita moschata])

HSP 1 Score: 137.1 bits (344), Expect = 7.8e-29
Identity = 67/96 (69.79%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNN---GRRCEK 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGP LVATVAFC NCV KNRRN     RR  +
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPKLVATVAFCQNCVEKNRRNGKTAQRRGRR 90

Query: 62  ACGSSDGGGTT--APSGCDDDDDEIENQVVPWLSLS 93
             G  +G G++     G  D DDE ENQVVPWLSLS
Sbjct: 91  RVGEEEGRGSSNGGSGGGSDSDDEKENQVVPWLSLS 126

[Close]

BLAST of CsaV3_6G049560 vs. ExPASy TrEMBL
Match: A0A0A0KHH6 (B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516780 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.0e-50
Identity = 93/93 (100.00%), Postives = 93/93 (100.00%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG
Sbjct: 31  VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 90

Query: 62  SSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS 95
           SSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS
Sbjct: 91  SSDGGGTTAPSGCDDDDDEIENQVVPWLSLSPS 123

[Close]

BLAST of CsaV3_6G049560 vs. ExPASy TrEMBL
Match: A0A5D3CS61 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006970 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.3e-44
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHK R NNGRRCEKACG
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKKRLNNGRRCEKACG 90

Query: 62  SSDGGGTTAPSGC-----DDDDDEIENQVVPWLSLSPS 95
           SS+GG  TAPSGC     DDDDDEIENQVVPWLSLSPS
Sbjct: 91  SSNGG--TAPSGCDDDDDDDDDDEIENQVVPWLSLSPS 126

[Close]

BLAST of CsaV3_6G049560 vs. ExPASy TrEMBL
Match: A0A5A7UBH5 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold120G003480 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.0e-43
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHK R NNGRRCEKACG
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKKRLNNGRRCEKACG 90

Query: 62  SSDGGGTTAPSGC------DDDDDEIENQVVPWLSLSPS 95
           SS+GG  TAP GC      DDDDDEIENQVVPWLSLSPS
Sbjct: 91  SSNGG--TAPIGCDDDDDDDDDDDEIENQVVPWLSLSPS 127

[Close]

BLAST of CsaV3_6G049560 vs. ExPASy TrEMBL
Match: A0A1S3B3D3 (putative zinc finger protein At1g68190 OS=Cucumis melo OX=3656 GN=LOC103485314 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.0e-43
Identity = 86/99 (86.87%), Postives = 88/99 (88.89%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGRRCEKACG 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHK R NNGRRCEKACG
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKKRLNNGRRCEKACG 90

Query: 62  SSDGGGTTAPSGC------DDDDDEIENQVVPWLSLSPS 95
           SS+GG  TAP GC      DDDDDEIENQVVPWLSLSPS
Sbjct: 91  SSNGG--TAPIGCDDDDDDDDDDDEIENQVVPWLSLSPS 127

[Close]

BLAST of CsaV3_6G049560 vs. ExPASy TrEMBL
Match: A0A6J1GEL4 (putative zinc finger protein At1g68190 OS=Cucurbita moschata OX=3662 GN=LOC111453480 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.8e-29
Identity = 67/96 (69.79%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNN---GRRCEK 61
           VHGANF+VGKHLRVLLCHDCQAPTPWNGSGP LVATVAFC NCV KNRRN     RR  +
Sbjct: 31  VHGANFLVGKHLRVLLCHDCQAPTPWNGSGPKLVATVAFCQNCVEKNRRNGKTAQRRGRR 90

Query: 62  ACGSSDGGGTT--APSGCDDDDDEIENQVVPWLSLS 93
             G  +G G++     G  D DDE ENQVVPWLSLS
Sbjct: 91  RVGEEEGRGSSNGGSGGGSDSDDEKENQVVPWLSLS 126

[Close]

BLAST of CsaV3_6G049560 vs. TAIR 10
Match: AT5G54470.1 (B-box type zinc finger family protein )

HSP 1 Score: 81.3 bits (199), Expect = 4.7e-16
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNG-------- 61
           VHGANF+V KH+R LLC  CQ+ TPW  SG NL  TV+ C +C+ + + NN         
Sbjct: 32  VHGANFLVAKHMRCLLCSACQSHTPWKASGLNLGPTVSICESCLARKKNNNSSLAGRDQN 91

Query: 62  -RRCEKACGSSDGGGT-TAPSGCDDDDDEIENQVVP 88
             + E+  G +DG  +    S  D++++E+ENQVVP
Sbjct: 92  LNQEEEIIGCNDGAESYDEESDEDEEEEEVENQVVP 127

[Close]

BLAST of CsaV3_6G049560 vs. TAIR 10
Match: AT4G27310.1 (B-box type zinc finger family protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 44/126 (34.92%), Postives = 53/126 (42.06%), Query Frame = 0


Query: 2   VHGANFIVGKHLRVLLCHDCQAPTPWNGSGPNLVATVAFCHNCVHKNRRNNGR------- 61
           VHGANF+V KH R LLC  CQ+ TPW  +G  L  T + C +CV       GR       
Sbjct: 31  VHGANFLVAKHTRCLLCSACQSLTPWKATGLRLGPTFSVCESCVALKNAGGGRGNRVLSE 90

Query: 62  -RCEKACGSSD----------GGGTTAPSGCDD---------------------DDDEIE 89
            R ++   S +          G G  A S  DD                     DD+E E
Sbjct: 91  NRGQEEVNSFESEEDRIREDHGDGDDAESYDDDEEEDEDEEYSDDEDEDDDEDGDDEEAE 150

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049560 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647679.1	5.6e-51	100.00	hypothetical protein Csa_003671 [Cucumis sativus]	[more]
XP_011658518.1	2.1e-50	100.00	zinc finger protein CONSTANS-LIKE 2 [Cucumis sativus]	[more]
TYK13089.1	1.9e-43	88.78	putative zinc finger protein [Cucumis melo var. makuwa]	[more]
XP_008441086.2	1.2e-42	86.87	PREDICTED: putative zinc finger protein At1g68190 [Cucumis melo] >KAA0052734.1 p...	[more]
XP_022950367.1	7.8e-29	69.79	putative zinc finger protein At1g68190 [Cucurbita moschata]	[more]

BLAST of CsaV3_6G049560 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G049560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHH6	1.0e-50	100.00	B box-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G516780 ...	[more]
A0A5D3CS61	9.3e-44	88.78	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UBH5	6.0e-43	86.87	Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3B3D3	6.0e-43	86.87	putative zinc finger protein At1g68190 OS=Cucumis melo OX=3656 GN=LOC103485314 P...	[more]
A0A6J1GEL4	3.8e-29	69.79	putative zinc finger protein At1g68190 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of CsaV3_6G049560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54470.1	4.7e-16	42.71	B-box type zinc finger family protein	[more]
AT4G27310.1	3.5e-11	34.92	B-box type zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..79
None	No IPR available	PANTHER	PTHR31717	ZINC FINGER PROTEIN CONSTANS-LIKE 10	coord: 2..91
None	No IPR available	PANTHER	PTHR31717:SF95	B-BOX TYPE ZINC FINGER PROTEIN	coord: 2..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049560.1	CsaV3_6G049560.1	mRNA