CsaV3_6G049250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Ubiquitin, putative
Location	chr6: 28796750 .. 28797343 (-)
RNA-Seq Expression	CsaV3_6G049250
Synteny	CsaV3_6G049250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGTGATATTAGTTCCAGAGAAAGGAGATACATTCGGCATTGAAGTTGGCTACTTCGACACCGTATTAGAAATCAAAGAAAAGATTGAGAAATACCAAGGTATTCCTATTCCCAAACAAACCCTAATCTTCAATGGCCGCATTCTACAAGACGACCGTGACGTTGAATTCTGTGAAATCTTGCAACACTCCCGGATTCAGCTTGTTGTCGCTAATTCCGAGTTATCTGCCCAATCCCAAATCGGACGCCTGATAATGAAACAGCACAATATGATTCCAGATCCTTCTTCTCATCATCCGCAATCGGGAACCACATCTACAAAAAATAGTAATAAGTTGAAAGTGATGGTTAAACCTAAATGTGGGAATTCAAAAATACCCATGGAAGTGAACCCAACAGACAACGTGGGTGAATTGAAGAAAGAGTTGGAAAAGCTTCAACAGAGAATGCAGTTTCATTTGCCTCCGGAGGGTTTCTTTTTTATTTATGATCGTGATGTTATGGATGAAGACCGTTCGTTTCGATGGCATGGTGTTGCTCATGGCGATACCATTGAGATCTTCAATGGCACTATTACGGGTGGATCTTGA

mRNA sequence

ATGGACGTGATATTAGTTCCAGAGAAAGGAGATACATTCGGCATTGAAGTTGGCTACTTCGACACCGTATTAGAAATCAAAGAAAAGATTGAGAAATACCAAGGTATTCCTATTCCCAAACAAACCCTAATCTTCAATGGCCGCATTCTACAAGACGACCGTGACGTTGAATTCTGTGAAATCTTGCAACACTCCCGGATTCAGCTTGTTGTCGCTAATTCCGAGTTATCTGCCCAATCCCAAATCGGACGCCTGATAATGAAACAGCACAATATGATTCCAGATCCTTCTTCTCATCATCCGCAATCGGGAACCACATCTACAAAAAATAGTAATAAGTTGAAAGTGATGGTTAAACCTAAATGTGGGAATTCAAAAATACCCATGGAAGTGAACCCAACAGACAACGTGGGTGAATTGAAGAAAGAGTTGGAAAAGCTTCAACAGAGAATGCAGTTTCATTTGCCTCCGGAGGGTTTCTTTTTTATTTATGATCGTGATGTTATGGATGAAGACCGTTCGTTTCGATGGCATGGTGTTGCTCATGGCGATACCATTGAGATCTTCAATGGCACTATTACGGGTGGATCTTGA

Coding sequence (CDS)

ATGGACGTGATATTAGTTCCAGAGAAAGGAGATACATTCGGCATTGAAGTTGGCTACTTCGACACCGTATTAGAAATCAAAGAAAAGATTGAGAAATACCAAGGTATTCCTATTCCCAAACAAACCCTAATCTTCAATGGCCGCATTCTACAAGACGACCGTGACGTTGAATTCTGTGAAATCTTGCAACACTCCCGGATTCAGCTTGTTGTCGCTAATTCCGAGTTATCTGCCCAATCCCAAATCGGACGCCTGATAATGAAACAGCACAATATGATTCCAGATCCTTCTTCTCATCATCCGCAATCGGGAACCACATCTACAAAAAATAGTAATAAGTTGAAAGTGATGGTTAAACCTAAATGTGGGAATTCAAAAATACCCATGGAAGTGAACCCAACAGACAACGTGGGTGAATTGAAGAAAGAGTTGGAAAAGCTTCAACAGAGAATGCAGTTTCATTTGCCTCCGGAGGGTTTCTTTTTTATTTATGATCGTGATGTTATGGATGAAGACCGTTCGTTTCGATGGCATGGTGTTGCTCATGGCGATACCATTGAGATCTTCAATGGCACTATTACGGGTGGATCTTGA

Protein sequence

MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCEILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHPQSGTTSTKNSNKLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIFNGTITGGS*

Homology

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BLAST of CsaV3_6G049250 vs. NCBI nr
Match: XP_004134970.1 (ubiquitin domain-containing protein 7SL RNA1 [Cucumis sativus] >KAE8647664.1 hypothetical protein Csa_002851 [Cucumis sativus])

HSP 1 Score: 402.5 bits (1033), Expect = 2.1e-108
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE
Sbjct: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHPQSGTTSTKNSNKLKVMVKP 120
           ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHPQSGTTSTKNSNKLKVMVKP
Sbjct: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHPQSGTTSTKNSNKLKVMVKP 120

Query: 121 KCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGV 180
           KCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGV
Sbjct: 121 KCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGV 180

Query: 181 AHGDTIEIFNGTITGGS 198
           AHGDTIEIFNGTITGGS
Sbjct: 181 AHGDTIEIFNGTITGGS 197

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BLAST of CsaV3_6G049250 vs. NCBI nr
Match: XP_008439960.1 (PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDVILVPE+GDTFGIEVGYFDTVLEIKEKIEKY GIPIPKQTLIFNGRILQDDRDVEFCE
Sbjct: 1   MDVILVPEQGDTFGIEVGYFDTVLEIKEKIEKYHGIPIPKQTLIFNGRILQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSS-HHPQSGTTSTKNSNKLKVMVK 120
           ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSS HHP SGTTSTKNSNKLKVMVK
Sbjct: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHHPPSGTTSTKNSNKLKVMVK 120

Query: 121 PKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG 180
           PKCG+SKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG
Sbjct: 121 PKCGSSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG 180

Query: 181 VAHGDTIEIFNGTITGGS 198
           VAHGDTIEIFNGTITGGS
Sbjct: 181 VAHGDTIEIFNGTITGGS 198

[Close]

BLAST of CsaV3_6G049250 vs. NCBI nr
Match: XP_038881479.1 (ubiquitin domain-containing protein 7SL RNA1-like [Benincasa hispida])

HSP 1 Score: 344.4 bits (882), Expect = 6.7e-91
Identity = 175/214 (81.78%), Postives = 186/214 (86.92%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDVI VPE+G+TFGIEVG+FDTVLEIKEKIEKY GIPIPKQ+LIFNGRILQD RDVEFCE
Sbjct: 1   MDVIFVPEQGETFGIEVGFFDTVLEIKEKIEKYHGIPIPKQSLIFNGRILQDHRDVEFCE 60

Query: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHH----PQSGTTSTKNS----- 120
           ILQHSRIQLVVANSELSAQS+IGRLIMKQ+N++PDP   H    PQ   TS+KN+     
Sbjct: 61  ILQHSRIQLVVANSELSAQSEIGRLIMKQNNILPDPPPPHQPPQPQKEITSSKNNNNNNS 120

Query: 121 --------NKLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFI 180
                   NKLKVMVKPK GNSKI MEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFI
Sbjct: 121 SSINNNNYNKLKVMVKPKSGNSKIAMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFI 180

Query: 181 YDRDVMDEDRSFRWHGVAHGDTIEIFNGTITGGS 198
           YDRDVMDEDRSFRWHGVAHGDTIEIFNGT+TGGS
Sbjct: 181 YDRDVMDEDRSFRWHGVAHGDTIEIFNGTVTGGS 214

[Close]

BLAST of CsaV3_6G049250 vs. NCBI nr
Match: XP_022950206.1 (biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata])

HSP 1 Score: 283.1 bits (723), Expect = 1.8e-72
Identity = 154/248 (62.10%), Postives = 174/248 (70.16%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDV+ VPEKG+ F IEVG+FDTVLEIKEKI+KY  IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVAN-SELSAQSQ--------IGRL---------------IMKQHN----- 120
           ILQHSRIQL+VA+ S+ ++QSQ        IGRL               IM Q N     
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNAASPT 120

Query: 121 ----------------------MIPDPSSHHPQSGTTSTKNSNKLKVMVKPKCGNSKIPM 180
                                 + P P+      G T+  + NKLKVMV+PK GNSKIPM
Sbjct: 121 ELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSSKNKLKVMVQPKFGNSKIPM 180

Query: 181 EVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIF 198
           EVNPTDNVGELKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIF
Sbjct: 181 EVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIF 240

[Close]

BLAST of CsaV3_6G049250 vs. NCBI nr
Match: XP_023543067.1 (biquitin domain-containing protein 7SL RNA1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 280.0 bits (715), Expect = 1.6e-71
Identity = 154/251 (61.35%), Postives = 171/251 (68.13%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDV+ VPEKG+ F IEVG+FDTVLEIKEKI+KY  IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVA-----NSELSAQSQ--------IGRL---------------IMKQHN- 120
           ILQHSRIQL+VA     NS+   QSQ        IGRL               IM Q N 
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQPQSQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNA 120

Query: 121 -------------------------MIPDPSSHHPQSGTTSTKNSNKLKVMVKPKCGNSK 180
                                    + P P+      G T+  + NKLKVMV+PK GNSK
Sbjct: 121 STTELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSSKNKLKVMVQPKFGNSK 180

Query: 181 IPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTI 198
           IPMEVNPTDNVGELKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRSFRWHGVA GDTI
Sbjct: 181 IPMEVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAQGDTI 240

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BLAST of CsaV3_6G049250 vs. ExPASy Swiss-Prot
Match: Q9ZT95 (Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=7SL1 PE=3 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.5e-19
Identity = 84/260 (32.31%), Postives = 114/260 (43.85%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQ--------- 60
           M+V +  E G +F I + + +TVLEIKEKIEK QGIP+ KQ L  +G+ L+         
Sbjct: 1   MNVYIDTETGSSFSITIDFGETVLEIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60

Query: 61  ------------------------------DDRDVEFCEILQHS---RIQLVVAN----- 120
                                         DD+  EFC I   S   +I  V+A      
Sbjct: 61  ILFESRLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSESKKITRVMARRVHNI 120

Query: 121 -SELSAQSQIGRLIMK---------QHNMIPDPSSHHPQSGTTS--------------TK 180
            S L A S    L  K         + N +  P+     SGT                  
Sbjct: 121 YSSLPAYSLDELLGPKYSATVAVGGRTNQVVQPTEQASTSGTAKEVLRDSDSPVEKKIKT 180

Query: 181 NSNKLKVMVKPKCGNSK-IPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDV 189
           N  K  V VKP   +++ I +EVN  DNV EL+KEL K+Q+R + +LP E F  +     
Sbjct: 181 NPMKFTVHVKPYQEDTRMIHVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELP 240

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy Swiss-Prot
Match: Q9ZQZ6 (Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=7SL2 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 81/259 (31.27%), Postives = 113/259 (43.63%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQ--------- 60
           M+V +  E G +F I + + +TVL+IKEKIEK QGIP+ KQ L  +G+ L+         
Sbjct: 1   MNVDIDTETGSSFSITIDFGETVLQIKEKIEKSQGIPVSKQILYLDGKALEDDLHKIDYM 60

Query: 61  -----------------------------DDRDVEFCEILQHS---RIQLVVAN------ 120
                                        DD+  EFC I   S   ++  V+A       
Sbjct: 61  ILFESLLLRISPDADPNQSNEQTEQSKQIDDKKQEFCGIQDSSESKKLTRVMARRVHNVY 120

Query: 121 SELSAQSQIGRLIMK---------QHNMIPDPSSHHPQSGTTS--------------TKN 180
           S L A S    L  K         + N +   +     SGT                  N
Sbjct: 121 SSLPAYSLDELLGPKYSATVTVGGRTNQVVQTTEQASTSGTAKEVLRDSDSPVEKKIKTN 180

Query: 181 SNKLKVMVKPKCGNSK-IPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVM 189
             K  V VKP   ++K I +EVN  DNV EL+KEL K+Q+R + +LP E F  +     +
Sbjct: 181 PMKFTVHVKPYQEDTKMIQVEVNADDNVEELRKELVKMQERGELNLPHEAFHLVSSELPL 240

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy Swiss-Prot
Match: P48510 (Ubiquitin domain-containing protein DSK2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DSK2 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 2.6e-05
Identity = 27/73 (36.99%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 11 DTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCEILQHSRIQLV 70
          D + + V    TVL+ KE I K  GIP+  Q LI++G+IL+DD+ VE   I     + LV
Sbjct: 12 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLV 71

Query: 71 VANSELSAQSQIG 84
           +  +    S  G
Sbjct: 72 KSQPKPQTASAAG 84

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy Swiss-Prot
Match: Q84L31 (Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 34/105 (32.38%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQG---IPIPKQTLIFNGRILQDDRDVE 60
           M + +   KG  F IEV   D+V+++K+ IE  QG    P  KQ LI  G++L+D+  +E
Sbjct: 1   MKIFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIE 60

Query: 61  FCEILQHSRIQLVVANSE-LSAQSQIGRLIMKQHNMIPDPSSHHP 102
             ++ ++S I +++  S+  SA +        Q   IP PS+  P
Sbjct: 61  ENKVAENSFIVIMMNKSKPASAAASSASAGTSQAKSIP-PSTSQP 104

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy Swiss-Prot
Match: P33190 (Ubiquitin-60S ribosomal protein L40 OS=Tetrahymena pyriformis OX=5908 GN=TUF11 PE=3 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 1.7e-04
Identity = 37/128 (28.91%), Postives = 59/128 (46.09%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           M + +    G T  ++V   DT+  +K KI+  +GIP  +Q LIF G+ L+D R +    
Sbjct: 1   MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 61  ILQHSRIQLVVANSELSAQSQIGRLIMK---QHNMIPDPSSHHPQSGTTSTK----NSNK 120
           I + S + LV+       +  I  L  K   +  +  D  +  P   T   K    +SN 
Sbjct: 61  IQKESTLHLVLRLRGGGMEPTIAALAKKYNCEKKVCRDCYARLPPKATNCRKRKCGHSNS 120

Query: 121 LKVMVKPK 122
           L++  KPK
Sbjct: 121 LRLKKKPK 128

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy TrEMBL
Match: A0A1S3AZZ9 (uncharacterized protein LOC103484590 OS=Cucumis melo OX=3656 GN=LOC103484590 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.2e-105
Identity = 193/198 (97.47%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDVILVPE+GDTFGIEVGYFDTVLEIKEKIEKY GIPIPKQTLIFNGRILQDDRDVEFCE
Sbjct: 1   MDVILVPEQGDTFGIEVGYFDTVLEIKEKIEKYHGIPIPKQTLIFNGRILQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSS-HHPQSGTTSTKNSNKLKVMVK 120
           ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSS HHP SGTTSTKNSNKLKVMVK
Sbjct: 61  ILQHSRIQLVVANSELSAQSQIGRLIMKQHNMIPDPSSHHHPPSGTTSTKNSNKLKVMVK 120

Query: 121 PKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG 180
           PKCG+SKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG
Sbjct: 121 PKCGSSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHG 180

Query: 181 VAHGDTIEIFNGTITGGS 198
           VAHGDTIEIFNGTITGGS
Sbjct: 181 VAHGDTIEIFNGTITGGS 198

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy TrEMBL
Match: A0A6J1GE65 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 GN=LOC111453369 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 8.9e-73
Identity = 154/248 (62.10%), Postives = 174/248 (70.16%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDV+ VPEKG+ F IEVG+FDTVLEIKEKI+KY  IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVAN-SELSAQSQ--------IGRL---------------IMKQHN----- 120
           ILQHSRIQL+VA+ S+ ++QSQ        IGRL               IM Q N     
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNAASPT 120

Query: 121 ----------------------MIPDPSSHHPQSGTTSTKNSNKLKVMVKPKCGNSKIPM 180
                                 + P P+      G T+  + NKLKVMV+PK GNSKIPM
Sbjct: 121 ELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAAPGMTTGSSKNKLKVMVQPKFGNSKIPM 180

Query: 181 EVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIF 198
           EVNPTDNVGELKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIF
Sbjct: 181 EVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVAHGDTIEIF 240

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy TrEMBL
Match: A0A6J1IPZ4 (biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=LOC111478395 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 154/256 (60.16%), Postives = 172/256 (67.19%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDV+ VPEKG+ F IEVG+FDTVLEIKEKI+KY  IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVLFVPEKGEAFAIEVGFFDTVLEIKEKIQKYHHIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVA-----NSELSAQSQ--------IGRL---------------IMKQHN- 120
           ILQHSRIQL+VA     NS+  +Q Q        IGRL               IM Q N 
Sbjct: 61  ILQHSRIQLLVASESQNNSQSQSQPQPQIDPNHSIGRLKQRIHDINSVGPINGIMLQSNA 120

Query: 121 -------------------------MIPDPSSHHPQSGTTST-----KNSNKLKVMVKPK 180
                                    + P P+      G T+       + NKLKVMV+PK
Sbjct: 121 SPTELQDQRSLRDSEMSENSEVEVCLRPSPTVSTAALGMTTPPPQPGSSKNKLKVMVQPK 180

Query: 181 CGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGVA 198
            GNSKIPMEVNPTDNVGELKKEL+KLQQR+ FHLPPEGFFFIYDRDVMDEDRSFRWHGVA
Sbjct: 181 FGNSKIPMEVNPTDNVGELKKELQKLQQRLHFHLPPEGFFFIYDRDVMDEDRSFRWHGVA 240

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy TrEMBL
Match: A0A6J1CMB8 (actin-related protein 8-like OS=Momordica charantia OX=3673 GN=LOC111012442 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 4.0e-65
Identity = 144/257 (56.03%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDVI  P KG  F IEVG+FDTVLEIKEKI+KY  IPIPKQTLIFNG +LQDDRDVEFCE
Sbjct: 1   MDVIFEPTKGRGFTIEVGFFDTVLEIKEKIQKYHRIPIPKQTLIFNGHVLQDDRDVEFCE 60

Query: 61  ILQHSRIQLVVA--------------NSELSAQSQIGRLIMKQHNMIPDPSS-----HHP 120
           ILQ+SRI+L+VA              N+  +A +   ++      + P P+S     HH 
Sbjct: 61  ILQNSRIKLIVAPSDHNNSSSNNNNNNNNNAAAAASVKIETPNSPISPSPNSNNKMIHHL 120

Query: 121 QS-----------------------------------------GTTSTKNSNKLKVMVKP 180
           QS                                            ST +S KLKVMVKP
Sbjct: 121 QSQFPIEIDPTKDQIIMESAVVPLNELSDNNSEIEVVSAATSATAGSTGSSKKLKVMVKP 180

Query: 181 KCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDEDRSFRWHGV 198
           KCG+ KIPMEVN +DNVGELKKEL+KLQQR+ FHLP EGFFFIYDRDVMDEDRSFRWHGV
Sbjct: 181 KCGSQKIPMEVNASDNVGELKKELQKLQQRLHFHLPQEGFFFIYDRDVMDEDRSFRWHGV 240

[Close]

BLAST of CsaV3_6G049250 vs. ExPASy TrEMBL
Match: A0A6P4PD81 (UV excision repair protein rhp23-like isoform X2 OS=Gossypium arboreum OX=29729 GN=LOC108482765 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.3e-60
Identity = 126/211 (59.72%), Postives = 152/211 (72.04%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDVI   +KG  F IEVG+FDTVLEIKEKI KY GIPIP QTLIFNG +LQDDRDVE+CE
Sbjct: 1   MDVIFETQKGKPFSIEVGFFDTVLEIKEKIHKYHGIPIPHQTLIFNGNVLQDDRDVEYCE 60

Query: 61  ILQHSRIQLVVANSELSAQS--QIGRLIMKQHNMIPDP------SSHHPQSGTT------ 120
           ILQ+SRIQL+V++   ++ S  Q         + +P P      +S+ P S T       
Sbjct: 61  ILQNSRIQLLVSSDSDTSNSTKQPQPNAAAADHQLPSPAKNAQLNSNTPSSNTVVPSETD 120

Query: 121 STKNSNKLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDR 180
              N  KLK++V PKCG  KIP+EVN TDNV EL+KEL+KL QR+QFHLP EG+FFIY +
Sbjct: 121 VNDNPKKLKLLVLPKCGTKKIPVEVNATDNVSELRKELQKLHQRLQFHLPQEGYFFIYKQ 180

Query: 181 DVMDEDRSFRWHGVAHGDTIEIFNGTITGGS 198
           +VMD+DRSFRWH V  GDTIEIFNG++TGGS
Sbjct: 181 NVMDDDRSFRWHQVGQGDTIEIFNGSVTGGS 211

[Close]

BLAST of CsaV3_6G049250 vs. TAIR 10
Match: AT4G05230.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.7e-55
Identity = 112/206 (54.37%), Postives = 140/206 (67.96%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDV      G TF IE+GY+DTVLEIK+KIEKYQ IP+ KQTL+F G +LQD  D+E C 
Sbjct: 1   MDVFFETRSGSTFEIELGYWDTVLEIKQKIEKYQRIPVSKQTLLFQGNVLQDHLDIEQCV 60

Query: 61  ILQHSRIQLVVANSELSAQS-QIGRL-IMKQHNMIPDPSSHH-------PQSGTTSTKNS 120
           IL HSRIQL +++ + S  + Q+ +     Q N     S+ H       P S   +  N 
Sbjct: 61  ILNHSRIQLSISSPDQSRNNIQVFKTEQFPQSNSTEQTSNGHHESTVMIPMSNNNNNNNP 120

Query: 121 NKLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEGFFFIYDRDVMDE 180
            KL+VMV PK G  KIP++VN  DNVGEL+KEL K+QQR Q  LP EG+FFIY ++VMDE
Sbjct: 121 KKLRVMVLPKSGTRKIPVDVNAGDNVGELRKELAKIQQRFQLSLPQEGYFFIYKQNVMDE 180

Query: 181 DRSFRWHGVAHGDTIEIFNGTITGGS 198
           +RSFRWH V  GDTIEIFNG+++GGS
Sbjct: 181 NRSFRWHRVDQGDTIEIFNGSVSGGS 206

[Close]

BLAST of CsaV3_6G049250 vs. TAIR 10
Match: AT4G03370.1 (Ubiquitin family protein )

HSP 1 Score: 109.0 bits (271), Expect = 4.4e-24
Identity = 80/280 (28.57%), Postives = 121/280 (43.21%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           M + +  E G TF I++G  DTVL  K KIE  Q IP+ +QT+ F G++L+D  D+   +
Sbjct: 1   MKMTVENESGSTFSIDIGLQDTVLTFKRKIEMTQRIPVSRQTIFFQGKLLEDHLDIFEWD 60

Query: 61  ILQHSRIQLVVANSELSAQSQIGR----------------------LIMKQHNMIPDPSS 120
           ILQ+  + L ++  +   Q+Q+ +                      +++ Q    P P  
Sbjct: 61  ILQNPLLHLSISPDDNPTQNQVPQSPSNPIHEFVKNQDSAEDKKNPVLLHQTGKPPLPPK 120

Query: 121 HHPQSGTTSTKNSN---------------------------------------------- 180
             P +    +KN +                                              
Sbjct: 121 SSPLTTENFSKNQHDRPVITKMVPELLGPQGTSPVTVGRRRNRDQEVQNRVSSSSDSVKE 180

Query: 181 ------------------KLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFH 195
                             K+ VMV+P     +I +EVN   NV  L+KEL K+Q+R + +
Sbjct: 181 VINIPDTPARKKTKNYPLKITVMVQPFEETRRIQVEVNVLSNVEVLRKELVKMQERGELN 240

[Close]

BLAST of CsaV3_6G049250 vs. TAIR 10
Match: AT4G05260.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 95.9 bits (237), Expect = 3.9e-20
Identity = 76/253 (30.04%), Postives = 111/253 (43.87%), Query Frame = 0


Query: 1   MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
           MDV    + G  F IE+GY+DTVLEIK+KIEKYQ IP+P QTL F G  L+D  D+  C+
Sbjct: 1   MDVYFETQNGRKFCIELGYWDTVLEIKKKIEKYQRIPVPNQTLFF-GNALEDHLDIGQCK 60

Query: 61  ILQHSRIQLV-------------------------------------------------- 120
           ILQ+S + L                                                   
Sbjct: 61  ILQNSHVVLFVLPDPNDNNDQVLQTEEQPPIIGDLIYGEDLPLTTEVVLNIRPFCPVQDS 120

Query: 121 -VANSELSAQSQIGRLIMKQHNMIPDPSSHHPQSGTTSTKNSN---------KLKVMVKP 180
            V N++ S  S   + I+K H   P  ++       +  +N+N          L + V P
Sbjct: 121 PVRNNDQSPPSDAAKDIIKGHQDSPVRNNEQTPPSDSVKENTNIQDSPVGKIILTLRVMP 180

Query: 181 KCGNSKIPMEVN----PTDNVGELKKELEKLQQRMQFHLPPEG-FFFIYDRDVMDEDRSF 189
             G  K    ++     T  V  L++EL + + R     P +G +FF++   V++ED+SF
Sbjct: 181 YSGKIKAAKNLHFITYKTYRVKMLRQELVQNELRDHLDRPQDGDYFFVHKGRVLNEDQSF 240

[Close]

BLAST of CsaV3_6G049250 vs. TAIR 10
Match: AT4G03360.1 (Ubiquitin family protein )

HSP 1 Score: 92.0 bits (227), Expect = 5.6e-19
Identity = 75/276 (27.17%), Postives = 118/276 (42.75%), Query Frame = 0


Query: 3   VILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCEIL 62
           VI+  + G +F I+V ++DTVL IK KIE  QG P+ KQ LIF  ++LQD  ++  C+I 
Sbjct: 4   VIIENQSGSSFTIDVSFWDTVLMIKRKIEMTQGTPVSKQILIFKRKVLQDHLNMFGCQIR 63

Query: 63  QHSRIQLVVANSELSAQSQIG--------------------------------------- 122
            +SRI L ++  +   Q+Q+                                        
Sbjct: 64  HNSRILLSISPDDNPTQNQVPQTNQSPSTPSNPIHEFVNNQDSPLSPKSSALTMEKFSKN 123

Query: 123 --------RLIMKQ------------------------------------HNMIPDPSSH 182
                   R++ K+                                     N +  PS  
Sbjct: 124 QQDRPPLMRVVAKRIDNGSSRPSYSLDELLAPRDSSTVAVGSIRNRDQEVKNRVSSPSDS 183

Query: 183 HPQSGTTSTKNSNKLKVMVKPKCGNSKIPMEVNPTDNVGELKKELEKLQQRMQFHLPPEG 194
             +    +   + K+ VMV+P      I +EV   DNV EL+KEL K+Q+R + +LP   
Sbjct: 184 VEEVINITDSLAMKMIVMVQPYGYTRMIQVEVTADDNVEELRKELVKMQERGELNLPQGM 243

[Close]

BLAST of CsaV3_6G049250 vs. TAIR 10
Match: AT4G05250.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-19
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 1  MDVILVPEKGDTFGIEVGYFDTVLEIKEKIEKYQGIPIPKQTLIFNGRILQDDRDVEFCE 60
          MDV    + GD F IE+GY+DT+LEIKEKIEKYQ IP+ KQTLIF G +LQD  D++ C 
Sbjct: 1  MDVFFETQSGDKFEIELGYWDTMLEIKEKIEKYQCIPVSKQTLIFQGVVLQDHLDIKQCV 60

Query: 61 ILQHSRIQLVV 72
          IL HS IQ+ V
Sbjct: 61 ILNHSHIQIFV 71

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134970.1	2.1e-108	100.00	ubiquitin domain-containing protein 7SL RNA1 [Cucumis sativus] >KAE8647664.1 hyp...	[more]
XP_008439960.1	1.1e-104	97.47	PREDICTED: uncharacterized protein LOC103484590 [Cucumis melo]	[more]
XP_038881479.1	6.7e-91	81.78	ubiquitin domain-containing protein 7SL RNA1-like [Benincasa hispida]	[more]
XP_022950206.1	1.8e-72	62.10	biquitin domain-containing protein 7SL RNA1-like [Cucurbita moschata]	[more]
XP_023543067.1	1.6e-71	61.35	biquitin domain-containing protein 7SL RNA1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G049250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT95	2.5e-19	32.31	Ubiquitin domain-containing protein 7SL RNA1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9ZQZ6	1.0e-17	31.27	Ubiquitin domain-containing protein 7SL RNA2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
P48510	2.6e-05	36.99	Ubiquitin domain-containing protein DSK2 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q84L31	1.7e-04	32.38	Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2	[more]
P33190	1.7e-04	28.91	Ubiquitin-60S ribosomal protein L40 OS=Tetrahymena pyriformis OX=5908 GN=TUF11 P...	[more]

BLAST of CsaV3_6G049250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZZ9	5.2e-105	97.47	uncharacterized protein LOC103484590 OS=Cucumis melo OX=3656 GN=LOC103484590 PE=...	[more]
A0A6J1GE65	8.9e-73	62.10	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IPZ4	1.4e-70	60.16	biquitin domain-containing protein 7SL RNA1-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1CMB8	4.0e-65	56.03	actin-related protein 8-like OS=Momordica charantia OX=3673 GN=LOC111012442 PE=4...	[more]
A0A6P4PD81	1.3e-60	59.72	UV excision repair protein rhp23-like isoform X2 OS=Gossypium arboreum OX=29729 ...	[more]

BLAST of CsaV3_6G049250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05230.1	1.7e-55	54.37	Ubiquitin-like superfamily protein	[more]
AT4G03370.1	4.4e-24	28.57	Ubiquitin family protein	[more]
AT4G05260.1	3.9e-20	30.04	Ubiquitin-like superfamily protein	[more]
AT4G03360.1	5.6e-19	27.17	Ubiquitin family protein	[more]
AT4G05250.1	7.3e-19	61.97	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..72 e-value: 1.6E-12 score: 57.6 coord: 116..191 e-value: 2.6 score: 10.6
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 6..72 e-value: 1.4E-16 score: 60.0 coord: 122..187 e-value: 1.1E-6 score: 28.2
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..71 score: 16.929583
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 114..188 score: 10.440514
None	No IPR available	GENE3D	3.10.20.90		coord: 1..82 e-value: 1.1E-16 score: 62.3
None	No IPR available	GENE3D	3.10.20.90		coord: 98..192 e-value: 2.1E-9 score: 39.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..111
None	No IPR available	PANTHER	PTHR10621:SF38	UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED	coord: 1..82
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 99..196
None	No IPR available	PANTHER	PTHR10621	UV EXCISION REPAIR PROTEIN RAD23	coord: 1..82
None	No IPR available	PANTHER	PTHR10621:SF38	UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED	coord: 99..196
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 116..189 e-value: 2.44225E-4 score: 36.035
None	No IPR available	CDD	cd17039	Ubl_ubiquitin_like	coord: 3..70 e-value: 1.42924E-14 score: 63.7694
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 3..71
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 90..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049250.1	CsaV3_6G049250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding