CsaV3_6G049100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G049100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	LRR receptor-like serine/threonine-protein kinase GSO1-like
Location	chr6: 28726765 .. 28728707 (+)
RNA-Seq Expression	CsaV3_6G049100
Synteny	CsaV3_6G049100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAATATCCGCCAAGAGATCCAAATTACTAAATTAAATTCCCACCAATCACATGGGTAACTGTTGCAAAGCTCAATCCTCCACTCCGGTGATGGAAGGCAGCCATCCGACGACTCCCCCGTTCAAGAACCACCCTCAGAGAAGGAACCAAGAAGGTAGTTCTAAAGAGACTAATTTGAGAGAGGTGAAAATAAGGATGACGAAGAAGGAGCTTCAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACAGGTTATGGCTCGCCTTGTGAATGTTATTAACTATCAAAATGGTGATAATAATAATGACCAAGTTGTGAAATTGCGTCAGCAACGTTCGTGGAGGCCTTCATTGCAAAGCATTCCTGAGATGATTTGAAGTACGTATATATCTAAAATATTTTTATTATTTGTTTCTTGAAACAAAATATATTATTTTCGGTTTCTTCTATTTTATTTCTTCTTAAGATTGTGTATTATTTAAAATACTACCATTGGAAAGATATGAAAGGGAAATAATCGAACGGATTCTAGGATGCTGTTTAGATTTAACCCATTGTGATATTAATTATACTTAAATGGAATCGAGATTATATGGGGATCATAATTCAGTTTAATAGAAATGAGTATATGGGTTGTTTTTGTTTTTGTTTTCTTTTATACATCTACAAATCTACATCCACCTAACCTAATTTTATAGGATCAGTCGTTTAATGTTCAAAAATTATGTGCCAAAGAAACTTATAGATAGAACTCATAACTAAACTATTTATTAAGGTCGTGCTTTTATATACTACTGAGTCAACCACTGTGTTCGTGAAGATAAGTTATAAGCAATAATAATAACGTTGGAAAAAGAATTAGAGGACCCTATGTAGTGTAGGACTCATTGGAATGAAACTTGAGATACAAATGATGGTTCCAAAATCGCTACCACACACTTGTTGTATGATTTAATTTTTATCTAAAATTTGAAATCTTTCTACTCTAAACGCAGTTCTGTGAGAAGAGAATATATGGTGTGTATAAGTATTTTTCTTAATTAAAAAAAAAAAAAGACAAAGGCATATGTATATTATGTATAATTATAAAACTTTAACCTGCACATTTTGGTGTGGGATTTTATTTGTGAAATAGAACTTATGTTTGTCTCATTAGATTGTGTAAATGATCTAGACACTTCAAATAGGTTGGACATTTAATATATGTTTTTGTATAAAATTCGTGATTAATTTGTACAATTCAAACAAAGTCCACAAATTTAGATTTACTAAATTCTGAAGCACATAAACCCTAGAGATACATAAAAAAAGTAATATTGGGCGTGTTGCTTTGCTAGGTTTGGTACCGTTGACAAATTGTACCAAATAGTTAAGATGATAATTTAACAACCATATAAGATATTGTGTTGATTAATTTGATTTTTAGTTGGAGTACATATGTTTGTTGACCAGCTAGTCCTTTTCTTTTGAAATTATAAAGCATGTGTTATGTGTTTGGTTAATTATGGAATGATTAATGAGTCAAAATGTTATATTATTTGATGTGTATTATATATAAATCTATTTGTTTGAATGGCAATAATCCAGATTGATGCAAAACTTTGATAATTAGGTATTGCGCTGTTATATGACTTATGAGAAGAGACCACGTTTATCTTCAGATCCAACCCAAAACATAATATGGTAAATTTATTTATTTTTTCTTTTCTAAAAAATGTCGGTAATGTCTTGCTCACATGCCGCTCACGTGCCCTACAATTATTATCTCATTTGGGGTTTCACCTTTCTTTCACTACAATTTTTTCTTTCCTTTTTGTTTCCATTTATAAAATTATGTACCCTTTTCCTTTTATGAATAATTATAAGAGTGATTTTATGTTTATGAAATACAGGGATGTGGTCTACAATTATCTAGTTTTATAAAGTAATTGCA

mRNA sequence

ATGGGTAACTGTTGCAAAGCTCAATCCTCCACTCCGGTGATGGAAGGCAGCCATCCGACGACTCCCCCGTTCAAGAACCACCCTCAGAGAAGGAACCAAGAAGGTAGTTCTAAAGAGACTAATTTGAGAGAGGTGAAAATAAGGATGACGAAGAAGGAGCTTCAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACAGGTTATGGCTCGCCTTGTGAATGTTATTAACTATCAAAATGGTGATAATAATAATGACCAAGTTGTGAAATTGCGTCAGCAACGTTCGTGGAGGCCTTCATTGCAAAGCATTCCTGAGATGATTTGA

Coding sequence (CDS)

ATGGGTAACTGTTGCAAAGCTCAATCCTCCACTCCGGTGATGGAAGGCAGCCATCCGACGACTCCCCCGTTCAAGAACCACCCTCAGAGAAGGAACCAAGAAGGTAGTTCTAAAGAGACTAATTTGAGAGAGGTGAAAATAAGGATGACGAAGAAGGAGCTTCAAGAATTGGTTGGATGGTTAAACATGGCGGATTCTAGCTTTGAACAGGTTATGGCTCGCCTTGTGAATGTTATTAACTATCAAAATGGTGATAATAATAATGACCAAGTTGTGAAATTGCGTCAGCAACGTTCGTGGAGGCCTTCATTGCAAAGCATTCCTGAGATGATTTGA

Protein sequence

MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI*

Homology

[Close]

BLAST of CsaV3_6G049100 vs. NCBI nr
Match: KGN49118.1 (hypothetical protein Csa_002843 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 3.4e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60
           MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60

Query: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI
Sbjct: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of CsaV3_6G049100 vs. NCBI nr
Match: XP_008441100.1 (PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypothetical protein E5676_scaffold255G006540 [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 7.3e-42
Identity = 95/114 (83.33%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS---SKETNLREVKIRMTKKELQEL 60
           MGNCCK Q STPV   S   TPP KNH QRR++EGS   SKETNLREVKIRMTKKEL+EL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           VGWLNMADSSFE VMARLVNVIN QNGDNNNDQVVKLRQQRSWRPSLQSIPE+I
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CsaV3_6G049100 vs. NCBI nr
Match: XP_022977330.1 (uncharacterized protein LOC111477681 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G      P KN  QRR+  GS       SKE NLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+EL+GWLNMADSSFEQVMARLVNVI+ QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CsaV3_6G049100 vs. NCBI nr
Match: KAG6603773.1 (hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G +    P KN  QRR+   S       SKE N+RE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+ELVGWLNMADSSFEQVMARLVNVI+ QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEEDRNIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CsaV3_6G049100 vs. NCBI nr
Match: KAG7033944.1 (hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 82/124 (66.13%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G +    P KN  QRR+   S       SKE N+RE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGRNRRALPPKNVRQRRHGASSCSTTIKGSKEGNMRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+ELVGWLNMADSSFEQVMARLVNVI+ QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELVGWLNMADSSFEQVMARLVNVISEQNGDDSEEDDRNIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CsaV3_6G049100 vs. ExPASy TrEMBL
Match: A0A0A0KHU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60
           MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW
Sbjct: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIRMTKKELQELVGW 60

Query: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI
Sbjct: 61  LNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 111

[Close]

BLAST of CsaV3_6G049100 vs. ExPASy TrEMBL
Match: A0A5D3CNX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006540 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 95/114 (83.33%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS---SKETNLREVKIRMTKKELQEL 60
           MGNCCK Q STPV   S   TPP KNH QRR++EGS   SKETNLREVKIRMTKKEL+EL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           VGWLNMADSSFE VMARLVNVIN QNGDNNNDQVVKLRQQRSWRPSLQSIPE+I
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CsaV3_6G049100 vs. ExPASy TrEMBL
Match: A0A1S3B2N5 (uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 95/114 (83.33%), Postives = 99/114 (86.84%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS---SKETNLREVKIRMTKKELQEL 60
           MGNCCK Q STPV   S   TPP KNH QRR++EGS   SKETNLREVKIRMTKKEL+EL
Sbjct: 1   MGNCCKGQYSTPVTGCSDRRTPPLKNHRQRRHEEGSSCCSKETNLREVKIRMTKKELEEL 60

Query: 61  VGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIPEMI 112
           VGWLNMADSSFE VMARLVNVIN QNGDNNNDQVVKLRQQRSWRPSLQSIPE+I
Sbjct: 61  VGWLNMADSSFEHVMARLVNVINDQNGDNNNDQVVKLRQQRSWRPSLQSIPEII 114

[Close]

BLAST of CsaV3_6G049100 vs. ExPASy TrEMBL
Match: A0A6J1IM02 (uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 83/124 (66.94%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGNCCKAQSSTPVMEGSHPTTPPFKNHPQRRNQEGS-------SKETNLREVKIRMTKKE 60
           MGNCC+ QSSTPV+ G      P KN  QRR+  GS       SKE NLRE+KIRMTKKE
Sbjct: 1   MGNCCRGQSSTPVVSGGDRRAQPPKNLRQRRHGAGSCSTTIKGSKEGNLRELKIRMTKKE 60

Query: 61  LQELVGWLNMADSSFEQVMARLVNVINYQNGDNNND------QVVKLRQQRSWRPSLQSI 112
           L+EL+GWLNMADSSFEQVMARLVNVI+ QNGD++ +      Q+VKLRQQRSWRPSLQSI
Sbjct: 61  LKELIGWLNMADSSFEQVMARLVNVISDQNGDDSEEDDENIGQMVKLRQQRSWRPSLQSI 120

[Close]

BLAST of CsaV3_6G049100 vs. ExPASy TrEMBL
Match: A0A200QLU8 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9009g2 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07
Identity = 50/137 (36.50%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 1   MGNCCKAQSSTP--------------VMEGSHPTTPPFKN---------HPQRRNQE--- 60
           MGNCC+ +SST                 E S  +T   +N         H Q  N     
Sbjct: 1   MGNCCRHESSTTWAGDDWGTPKSETFTKEMSKTSTTSEENEEKNLLSCTHHQHENDNQKN 60

Query: 61  -GSSKETNLREVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVK 111
             SS  ++  EVKIR+TKKEL+EL+G +++   S EQ++A+L+N        + +D    
Sbjct: 61  GKSSSSSSSTEVKIRITKKELEELLGKIDVQGLSVEQIIAQLMN--------STSDDDQY 120

[Close]

BLAST of CsaV3_6G049100 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-06
Identity = 27/76 (35.53%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 36  SSKETNLREVKIRMTKKELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKL- 95
           SS  +  RE+KIR+TKKEL++L+  + +   + E+++++L+    ++ GD      V + 
Sbjct: 57  SSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSKLI----FEGGDQIGFSAVDVT 116

Query: 96  RQQRSWRPSLQSIPEM 111
              + W+P LQSIPEM
Sbjct: 117 NHHQPWKPVLQSIPEM 128

[Close]

BLAST of CsaV3_6G049100 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 42.7 bits (99), Expect = 2.2e-04
Identity = 36/122 (29.51%), Postives = 54/122 (44.26%), Query Frame = 0


Query: 1   MGNCCKAQSS------------TPVMEGSHPTTPPFKNHPQRRNQEGSSKETNLREVKIR 60
           MGNC + +S             T   E  H ++   ++         S       E+KIR
Sbjct: 1   MGNCLRHESEMHWAGEDWDEFITEDEEDHHYSSKTTRDGKPVIVTRDSKSSVPSHEIKIR 60

Query: 61  MTKKELQELVGWLNMADSSFEQVMARLVNVINYQNGDNNNDQVVKLRQQRSWRPSLQSIP 111
           +TKK+L +L+  +N+ D +F+Q          +     NN    +  QQR WRP LQSIP
Sbjct: 61  LTKKQLHDLLSKVNVHDLTFQQQ--------TFSCPILNNRGYEEANQQRLWRPVLQSIP 114

The following BLAST results are available for this feature:

BLAST of CsaV3_6G049100 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49118.1	3.4e-55	100.00	hypothetical protein Csa_002843 [Cucumis sativus]	[more]
XP_008441100.1	7.3e-42	83.33	PREDICTED: uncharacterized protein LOC103485326 [Cucumis melo] >TYK13052.1 hypot...	[more]
XP_022977330.1	2.3e-32	66.94	uncharacterized protein LOC111477681 [Cucurbita maxima]	[more]
KAG6603773.1	1.5e-31	66.13	hypothetical protein SDJN03_04382, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7033944.1	1.5e-31	66.13	hypothetical protein SDJN02_03670, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_6G049100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G049100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHU7	1.6e-55	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514300 PE=4 SV=1	[more]
A0A5D3CNX5	3.5e-42	83.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B2N5	3.5e-42	83.33	uncharacterized protein LOC103485326 OS=Cucumis melo OX=3656 GN=LOC103485326 PE=...	[more]
A0A6J1IM02	1.1e-32	66.94	uncharacterized protein LOC111477681 OS=Cucurbita maxima OX=3661 GN=LOC111477681...	[more]
A0A200QLU8	2.8e-07	36.50	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_9009g2 PE=4 SV=1	[more]

BLAST of CsaV3_6G049100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	1.4e-06	35.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	2.2e-04	29.51	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..42
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..109
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G049100.1	CsaV3_6G049100.1	mRNA