CsaV3_6G048380 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048380
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 28390306 .. 28391505 (+)
RNA-Seq ExpressionCsaV3_6G048380
SyntenyCsaV3_6G048380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCGCCATATAAAGGCGTATGCCACTCGACGGGGCTTCTTTATTTGTCATCGCCTTCACCAGATACTGCTTTACATTTCCTTTACCGTGACTTGTGCAACAAGCGTTTCAGTGTTTAACCCCCGCTTCCATCGAAGGTATACAATCGTTTTCTTTTTCTTCGTTTTTTCCGTTGATTCTCTGTTTAATTGGCGGTCCGGCGGGGAGATTCTGGCCGTCACCATCACTCTCTTCTTTTTATTTGTTTTTTTATTTTATTTTTTTATTTATAGTTATGGATAACTGTTTGTGAGTTTGACTTCTAATTTGGTGTTCGGTGAGTTTCTTTGGTTTCTCCAATTCTTCTTTGCTCTGTGTTCCAAATTTGACCAGCTGTTCTTTGGATTTCTAACTTTACTGCTCCGCGCTTTGGTTGATTTCTCGCGTTCACTGAAAAACTCGTGATGCATTCCTCTTCTTCTTTCTCTGACTCGTTGATTGTTTTTTATTTTTATTGAACGTGCTGCCTTTCAGGTAGGTACTAATTGACCAGGGACTTGGCTTTTTTGAGTTTCTGAATCGAAACTCGCAAAACTAGTTTTTGTGCCATCTGCTAATGTACTTGATTTGCTCAAACGGCGTGATTTTTTAGATTTATGTCCCTTGTTAGCTTTTTATCGAGTTGTGGCTATTTTATGGAGTATTCGTGTTGTCTTTTCTGGTAATTAGTTGTGTATTATGTGAAGAAATGGTGTTTCGAGTGAAAAATTTTGTGCTGATTTATCCAACCGTGATTTCTGGTGGTGATTGAAACGGAAGAGATCTTTTATCTTTCTAGTGAGCATATTGCCTTTTATTTCGTAATTTTTAAGGGGATACGGAAAACTTCTTCATTTTTTAAAAAAAATTATAGGCCGAAGATGTTGAAACGTTGTATTTTGACTCAATTCGTAGAAAGTTTCTTCTGAGAATTTGGGTTTTTTACCCTGTATTTGTGTTCATGCATGTTTGATGTGATAGTGTAGGATCTAATTTGTGGTTTCAATTTTGGACTCCGGCGCTTACTTGTATTGTTTGGTTCAACAATTTTAATTCTGTGGTATTGATTTTTGTTCTGTTATCTGCAGATTTTGGGGATTCTTCGATATTCCAGTTTTTACCGGTAAAGAAGGCAACTGCCTTAACTACTGCAGAGCATATAAGAATTTTGAGTCCTAA

mRNA sequence

ATGAACCGCCATATAAAGGCGTATGCCACTCGACGGGGCTTCTTTATTTGTCATCGCCTTCACCAGATACTGCTTTACATTTCCTTTACCGTGACTTGTGCAACAAGCGTTTCAGTGTTTAACCCCCGCTTCCATCGAAGATTTTGGGGATTCTTCGATATTCCAGTTTTTACCGGTAAAGAAGGCAACTGCCTTAACTACTGCAGAGCATATAAGAATTTTGAGTCCTAA

Coding sequence (CDS)

ATGAACCGCCATATAAAGGCGTATGCCACTCGACGGGGCTTCTTTATTTGTCATCGCCTTCACCAGATACTGCTTTACATTTCCTTTACCGTGACTTGTGCAACAAGCGTTTCAGTGTTTAACCCCCGCTTCCATCGAAGATTTTGGGGATTCTTCGATATTCCAGTTTTTACCGGTAAAGAAGGCAACTGCCTTAACTACTGCAGAGCATATAAGAATTTTGAGTCCTAA

Protein sequence

MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGKEGNCLNYCRAYKNFES*
Homology
[Close]
BLAST of CsaV3_6G048380 vs. NCBI nr
Match: KGN49046.1 (hypothetical protein Csa_003466 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 8.8e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGK 60
          MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGK
Sbjct: 1  MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGK 60

Query: 61 EGNCLNYCRAYKNFES 77
          EGNCLNYCRAYKNFES
Sbjct: 61 EGNCLNYCRAYKNFES 76

[Close]
BLAST of CsaV3_6G048380 vs. ExPASy TrEMBL
Match: A0A0A0KMX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511610 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 4.3e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGK 60
          MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGK
Sbjct: 1  MNRHIKAYATRRGFFICHRLHQILLYISFTVTCATSVSVFNPRFHRRFWGFFDIPVFTGK 60

Query: 61 EGNCLNYCRAYKNFES 77
          EGNCLNYCRAYKNFES
Sbjct: 61 EGNCLNYCRAYKNFES 76

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49046.18.8e-39100.00hypothetical protein Csa_003466 [Cucumis sativus][more]
BLAST of CsaV3_6G048380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMX24.3e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511610 PE=4 SV=1[more]
BLAST of CsaV3_6G048380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048380.1CsaV3_6G048380.1mRNA