CsaV3_6G048330 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN* Homology
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_011658113.1 (uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_003579 [Cucumis sativus]) HSP 1 Score: 206.8 bits (525), Expect = 8.3e-50 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: TYK12988.1 (uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa]) HSP 1 Score: 190.3 bits (482), Expect = 8.0e-45 Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_038882557.1 (uncharacterized protein LOC120073788 [Benincasa hispida]) HSP 1 Score: 167.9 bits (424), Expect = 4.3e-38 Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: KAG6603827.1 (hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034009.1 hypothetical protein SDJN02_03735, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 157.1 bits (396), Expect = 7.5e-35 Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: KAG6594704.1 (hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026671.1 hypothetical protein SDJN02_10674, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33 Identity = 73/97 (75.26%), Postives = 80/97 (82.47%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A0A0KMW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 4.0e-50 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A5D3CP92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005850 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 3.9e-45 Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A6J1BUU9 (uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005569 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30 Identity = 73/106 (68.87%), Postives = 80/106 (75.47%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A7J0EYW1 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_08g0000310 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24 Identity = 62/106 (58.49%), Postives = 75/106 (70.75%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A6J1B6U9 (uncharacterized protein LOC110424651 OS=Herrania umbratica OX=108875 GN=LOC110424651 PE=4 SV=1) HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24 Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 94.0 bits (232), Expect = 7.3e-20 Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17 Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 2.6e-17 Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15 Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0
BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09 Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|