CsaV3_6G048330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048330
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 28371535 .. 28371828 (-)
RNA-Seq ExpressionCsaV3_6G048330
SyntenyCsaV3_6G048330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA

mRNA sequence

ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA

Coding sequence (CDS)

ATGGATTTAAGAGGGCTGCTTCATTCAGTAAGTTATCTTCTTGGGAACCCAAATGAGGCCCATGCCTATGGTGAAGAGAGAAGTTCAAAAGGGAAAAAGGGTTATGAAGAATTATGCAATTCTGGGTTTCAAATGCCTCTTCATTACCCTCGCTACAAGAAGTCGGATTATCAGAAGATGGAGGAGTGGAAGCTGGATCTCCTTCTCAAAGAATATGGCTTGAGTTTTGAAGGCAGTTTGGAGGAGAAGAGGGCCTTTGCAATGGGTGCATTTTTATGGCCTGATCAGAATTGA

Protein sequence

MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN*
Homology
BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_011658113.1 (uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical protein Csa_003579 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 8.3e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 98
          EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 97

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: TYK12988.1 (uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa])

HSP 1 Score: 190.3 bits (482), Expect = 8.0e-45
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          MDLR LLHS SYLLGNPNEAHAYGEERSS GKKGYEE+CNSGFQMPLHYPRYKKSDYQ M
Sbjct: 1  MDLRWLLHSTSYLLGNPNEAHAYGEERSSTGKKGYEEICNSGFQMPLHYPRYKKSDYQNM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
          E WKLDLLLKEYGLSF+GSLEEKRAFAMGAF+WPDQ
Sbjct: 61 EGWKLDLLLKEYGLSFQGSLEEKRAFAMGAFIWPDQ 96

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: XP_038882557.1 (uncharacterized protein LOC120073788 [Benincasa hispida])

HSP 1 Score: 167.9 bits (424), Expect = 4.3e-38
Identity = 81/96 (84.38%), Postives = 85/96 (88.54%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          M LR LLHS SYLLGNP EA   GEE SSKGK GYEE+C SGFQMPLHYPRY K+DYQKM
Sbjct: 1  MALRWLLHSTSYLLGNPIEAR--GEESSSKGKNGYEEICTSGFQMPLHYPRYNKADYQKM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
          EEWKLDLLLKEYGLSF+GSLEEKRAFA+GAFLWPDQ
Sbjct: 61 EEWKLDLLLKEYGLSFQGSLEEKRAFAIGAFLWPDQ 94

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: KAG6603827.1 (hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034009.1 hypothetical protein SDJN02_03735, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157.1 bits (396), Expect = 7.5e-35
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPN-EAHAYGEERSSKGKKGYEELC-NSGFQMPLHYPRYKKSDYQ 60
          M L  LL+S + LLGNPN E H YGEERSSKG+KG EE+C +SGFQMPLHYP Y K+DYQ
Sbjct: 1  MALGWLLYSAARLLGNPNHEVHGYGEERSSKGEKGCEEICTSSGFQMPLHYPHYTKADYQ 60

Query: 61 KMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
          KMEEWK+D LLKEYGLSF+GSLEEKRAFAMGAFLWPDQ
Sbjct: 61 KMEEWKVDQLLKEYGLSFQGSLEEKRAFAMGAFLWPDQ 98

BLAST of CsaV3_6G048330 vs. NCBI nr
Match: KAG6594704.1 (hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026671.1 hypothetical protein SDJN02_10674, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 4.1e-33
Identity = 73/97 (75.26%), Postives = 80/97 (82.47%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          M L+ LLHS S LLGNP E        SS+GK+G EE+CNSGFQMPLHYPRY K+DYQKM
Sbjct: 1  MPLKWLLHSTSCLLGNPIEVPI-----SSQGKRGCEEICNSGFQMPLHYPRYNKADYQKM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 98
          E+WK+DLLLKEYGLSF GSLEEKRAFAMGAF WPDQN
Sbjct: 61 EDWKVDLLLKEYGLSFHGSLEEKRAFAMGAFTWPDQN 92

BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A0A0KMW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.0e-50
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM
Sbjct: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 98
          EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN
Sbjct: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQN 97

BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A5D3CP92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005850 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 3.9e-45
Identity = 88/96 (91.67%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MDLRGLLHSVSYLLGNPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKM 60
          MDLR LLHS SYLLGNPNEAHAYGEERSS GKKGYEE+CNSGFQMPLHYPRYKKSDYQ M
Sbjct: 1  MDLRWLLHSTSYLLGNPNEAHAYGEERSSTGKKGYEEICNSGFQMPLHYPRYKKSDYQNM 60

Query: 61 EEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
          E WKLDLLLKEYGLSF+GSLEEKRAFAMGAF+WPDQ
Sbjct: 61 EGWKLDLLLKEYGLSFQGSLEEKRAFAMGAFIWPDQ 96

BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A6J1BUU9 (uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005569 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.6e-30
Identity = 73/106 (68.87%), Postives = 80/106 (75.47%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNPNEAHAYG--------EERSSKGKKGYEELCN--SGFQMPLHYP 60
           M L+ LLHS  YLL   NE HA          EER  KGKKG EE+CN  SGFQMPLHYP
Sbjct: 3   MALKWLLHSACYLL---NEVHACANGGVKTSDEERIPKGKKGCEEICNSASGFQMPLHYP 62

Query: 61  RYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           RY K+DYQKMEEW++DLLL +YG+ FEGSLEEKRAFAMGAFLWPDQ
Sbjct: 63  RYNKADYQKMEEWEVDLLLNQYGMGFEGSLEEKRAFAMGAFLWPDQ 105

BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A7J0EYW1 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_08g0000310 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 62/106 (58.49%), Postives = 75/106 (70.75%), Query Frame = 0

Query: 1   MDLRGLLHSV-SYLLGNPNEAHAYGEERS---------SKGKKGYEELCNSGFQMPLHYP 60
           M LR LLHS  + +LG PNEA    + +S          K      ++C SGFQMPLHYP
Sbjct: 1   MALRWLLHSAYAIVLGYPNEAAVQKQVKSLTFQSDQNLPKSAGTCVQMCCSGFQMPLHYP 60

Query: 61  RYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           RYKK+DY+KMEEWK+D++L+EYGL F GSL+EKRAFAMG FLWPDQ
Sbjct: 61  RYKKADYEKMEEWKVDMVLQEYGLRFMGSLDEKRAFAMGVFLWPDQ 106

BLAST of CsaV3_6G048330 vs. ExPASy TrEMBL
Match: A0A6J1B6U9 (uncharacterized protein LOC110424651 OS=Herrania umbratica OX=108875 GN=LOC110424651 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 0

Query: 1   MDLRGLLHSVSYLLGNP------------------NEAHAYGEERSSKGKKGYE------ 60
           M LR  +HS  ++LG P                   E H+ G  RSSK   G +      
Sbjct: 1   MALRWFVHSACHVLGYPKDDHPSHLQHCNNMGSYQKEGHSGGVIRSSKVSNGEQLSTQTA 60

Query: 61  ELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           E+  SGFQMPLHYPRY K+DYQKMEEWK+D+LL+EYGLSF+G+L+EKRA+AMGAFLWPDQ
Sbjct: 61  EMHLSGFQMPLHYPRYTKADYQKMEEWKVDVLLREYGLSFKGTLDEKRAYAMGAFLWPDQ 120

BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT5G55620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G09950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.0 bits (232), Expect = 7.3e-20
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 0

Query: 41  SGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFEGSLEEKRAFAMGAFLWPDQ 97
           SGFQ+PLHYP+Y KSDY+ M++ +LDLLLK+YG SFEGSLE+KR FA+ +FLWPDQ
Sbjct: 45  SGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQ 100

BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT5G41761.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-17
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0

Query: 18 NEAHAYGE----ERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYG 77
          N +H  GE    E ++K      +  +S FQ+PLHYP+Y KSDY+KM EW+LD LL+EYG
Sbjct: 16 NRSHQDGEDQRNETATKINHDKPQNQSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYG 75

Query: 78 LSFEGSLEEKRAFAMGAFLWPDQN 98
          L   G   EKR FA+GAFLW  +N
Sbjct: 76 LPVIGDSYEKRKFAIGAFLWSSEN 99

BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT3G09950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 85.5 bits (210), Expect = 2.6e-17
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 21 HAYGEER-SSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGL--SFE 80
          HA  +E   +  K G  +  +SGF+MPLHYPRY K DY++MEEW+LDLLL EYGL    +
Sbjct: 13 HAKNQESVENLDKNGAVKAPSSGFKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHD 72

Query: 81 GSLEEKRAFAMGAFLWP 95
           +L EKRAFA+  F+WP
Sbjct: 73 NTLHEKRAFAIDTFIWP 89

BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT3G55570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41761.1); Has 128 Blast hits to 128 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.3 bits (194), Expect = 1.9e-15
Identity = 40/78 (51.28%), Postives = 47/78 (60.26%), Query Frame = 0

Query: 16 NPNEAHAYGEERSSKGKKGYEELCNSGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLS 75
          N      Y +  + K  +G      S F+MPLHYPRY K DYQ M EWKLD +L +YGLS
Sbjct: 11 NKGNEEVYMDVENGKNGEG------SVFRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLS 70

Query: 76 FEGSLEEKRAFAMGAFLW 94
            G L  KR FA+GAFLW
Sbjct: 71 TYGDLAHKRDFAIGAFLW 82

BLAST of CsaV3_6G048330 vs. TAIR 10
Match: AT3G11405.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G55570.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.2e-09
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 41  SGFQMPLHYPRYKKSDYQKMEEWKLDLLLKEYGLSFE-GSLEEKRAFAMGAFLW 94
           S FQMPL YP Y K  Y  M E +LD LLK YGL  + G+L  K+ FA+GAFLW
Sbjct: 55  SSFQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658113.18.3e-50100.00uncharacterized protein LOC105435946 [Cucumis sativus] >KGN49041.1 hypothetical ... [more]
TYK12988.18.0e-4591.67uncharacterized protein E5676_scaffold255G005850 [Cucumis melo var. makuwa][more]
XP_038882557.14.3e-3884.38uncharacterized protein LOC120073788 [Benincasa hispida][more]
KAG6603827.17.5e-3578.57hypothetical protein SDJN03_04436, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594704.14.1e-3375.26hypothetical protein SDJN03_11257, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KMW84.0e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511080 PE=4 SV=1[more]
A0A5D3CP923.9e-4591.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1BUU91.6e-3068.87uncharacterized protein LOC111005569 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A7J0EYW12.2e-2458.49Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_08g0000310 PE=4 SV=1[more]
A0A6J1B6U92.9e-2453.33uncharacterized protein LOC110424651 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
Match NameE-valueIdentityDescription
AT5G55620.17.3e-2071.43unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G41761.11.5e-1751.19unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G09950.12.6e-1754.55unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G55570.11.9e-1551.28unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G11405.11.2e-0957.41unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33513:SF2SUBFAMILY NOT NAMEDcoord: 5..96
NoneNo IPR availablePANTHERPTHR33513OS06G0523300 PROTEINcoord: 5..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048330.1CsaV3_6G048330.1mRNA