CsaV3_6G048320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G048320
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 28371465 .. 28371947 (+)
RNA-Seq ExpressionCsaV3_6G048320
SyntenyCsaV3_6G048320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGACAGCAGATGACAGTCGAATTCAAACCTTTATTTTGAAAGAGAGGGAGATAAAAGAGCATATCAATTCTGATCAGGCCATAAAAATGCACCCATTGCAAAGGCCCTCTTCTCCTCCAAACTGCCTTCAAAACTCAAGCCATATTCTTTGAGAAGGAGATCCAGCTTCCACTCCTCCATCTTCTGATAATCCGACTTCTTGTAGCGAGGGTAATGAAGAGGCATTTGAAACCCAGAATTGCATAATTCTTCATAACCCTTTTTCCCTTTTGAACTTCTCTCTTCACCATAGGCATGGGCCTCATTTGGGTTCCCAAGAAGATAACTTACTGAATGAAGCAGCCCTCTTAAATCCATGGCTGGGTCTCTGTCAAAGAAAAGAAACAGAGAGAAACAGGAGAAGGAAAGTGTTTTTGTTTTGTAAGTTAAGACTCAAGAGGCAAGAGGGTGTGAATGGAATGCAAGCATATTTATAG

mRNA sequence

GAAGGAGATCCAGCTTCCACTCCTCCATCTTCTGATAATCCGACTTCTTGTAGCGAGGGTAATGAAGAGGCATTTGAAACCCAGAATTGCATAATTCTTCATAACCCTTTTTCCCTTTTGAACTTCTCTCTTCACCATAGGCATGGGCCTCATTTGGGTTCCCAAGAAGATAACTTACTGAATGAAGCAGCCCTCTTAAATCCATGGCTGGGTCTCTGTCAAAGAAAAGAAACAGAGAGAAACAGGAGAAGGAAAGTGTTTTTGTTTTGTAAGTTAAGACTCAAGAGGCAAGAGGGTGTGAATGGAATGCAAGCATATTTATAG

Coding sequence (CDS)

GAAGGAGATCCAGCTTCCACTCCTCCATCTTCTGATAATCCGACTTCTTGTAGCGAGGGTAATGAAGAGGCATTTGAAACCCAGAATTGCATAATTCTTCATAACCCTTTTTCCCTTTTGAACTTCTCTCTTCACCATAGGCATGGGCCTCATTTGGGTTCCCAAGAAGATAACTTACTGAATGAAGCAGCCCTCTTAAATCCATGGCTGGGTCTCTGTCAAAGAAAAGAAACAGAGAGAAACAGGAGAAGGAAAGTGTTTTTGTTTTGTAAGTTAAGACTCAAGAGGCAAGAGGGTGTGAATGGAATGCAAGCATATTTATAG

Protein sequence

EGDPASTPPSSDNPTSCSEGNEEAFETQNCIILHNPFSLLNFSLHHRHGPHLGSQEDNLLNEAALLNPWLGLCQRKETERNRRRKVFLFCKLRLKRQEGVNGMQAYL*
Homology
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BLAST of CsaV3_6G048320 vs. NCBI nr
Match: KAE8647640.1 (hypothetical protein Csa_023549, partial [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 9.4e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   EGDPASTPPSSDNPTSCSEGNEEAFETQNCIILHNPFSLLNFSLHHRHGPHLGSQEDNLL 60
           EGDPASTPPSSDNPTSCSEGNEEAFETQNCIILHNPFSLLNFSLHHRHGPHLGSQEDNLL
Sbjct: 1   EGDPASTPPSSDNPTSCSEGNEEAFETQNCIILHNPFSLLNFSLHHRHGPHLGSQEDNLL 60

Query: 61  NEAALLNPWLGLCQRKETERNRRRKVFLFCKLRLKRQEGVNGMQAYL 108
           NEAALLNPWLGLCQRKETERNRRRKVFLFCKLRLKRQEGVNGMQAYL
Sbjct: 61  NEAALLNPWLGLCQRKETERNRRRKVFLFCKLRLKRQEGVNGMQAYL 107

The following BLAST results are available for this feature:
BLAST of CsaV3_6G048320 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647640.19.4e-55100.00hypothetical protein Csa_023549, partial [Cucumis sativus][more]
BLAST of CsaV3_6G048320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G048320 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G048320.1CsaV3_6G048320.1mRNA