CsaV3_6G047070 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G047070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transducin/WD40 repeat-like superfamily protein
Location	chr6: 27770288 .. 27772203 (-)
RNA-Seq Expression	CsaV3_6G047070
Synteny	CsaV3_6G047070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAAAATCAAGACGAGTCCCCAGGAAGATCAAGCCCCCGCCCAATCTCTGCCTCCGAAAACCAAGATCCGGCGACGCCAAGAAGACCACCAAGCCCCCGTCGCCAATGACCCTGTTCGAGCGCCTCCGCGAGGCTGTTTTCCGATTCATTATGCTGTGTGCTCTCTCAAAGGCCACAAATCATCATCCCGCCGCCGGAGCCACCTTCCAAGACGACGTAGTCGTAAGGCGGCGACACTCATATCCTAACGTCGACCACCACCACAGTGAAGCCGTCGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGACGAGGTAATTCTTGACCGTGGATCGGTGGATGACGCCGATGATGATATGACGGTGTCGGTGCCGGTGCCGGTCAGGTAAAAAAAGTGCAGGGTGGATCCAATTTAGTGACTTTTGTGTGTTTGAAATTGAATGTATTGTTCGTATGTTTTACAATTTGGGTCTTATGTAGATGTGTAAATTATGAGTTTGTAGAATGGTATGTAGAGAAATTTCATGTGGATATCTTTCTATATGTATGATTTTGTTTTTGCTATATTGTTGTTACGAAGCATACAGAGTGAGATCACGTTGAAGTACGAAGTATCTTTTTGCTCAGATATTTTAGTTATATTATATTTATGTAAGTATTAAAATTAAAGTGTGTCCAAGCAAATTTAGGAAAATTACACTTGACCTTAAAAGAACTAAGCTAAACTTGGAAATGTTGTTACATTGTGAATGTATACATATAATAAAATGGTTGGTTCTACACACCAGGGAGAGACAATTTTTCTTTTTTTATAATGAAATAAAACAAAACATATATAGTTTTAACAGATTGAAATACTAATAAAAATGTGTATTTAGCTTGTTTGTAATTTCATATAATGCTATTTGGAAGTCTCGTTCTTTGTATTGGAAGCCAAGGATCGAGGTGTTGTGTTGGGAATTGTCGCATTGTCCCATGTTCGTTAGCGTTGAGATGATTTTGCTAACAATGTTATGCATAAAGCTTTAGTGGATCAATTTTTTTTTTTTATGCTTTTGTCTAGTAGTGGTATTTTGTAATTGGTTGGACTTTTACCCTCTTGATTGTTGTTTTTAAAAAGAAAAAGTATCATGAACTCTCATGCACATGAATTCAGACAAACGTGTCATTTGAAATATATAAAATTAAAAGTTTGTAAATTTATTCGTCAAGTATTGTTAAATATGACAAACCTATCATTATGATCAACTGACTAAAAAAAGATGATAACACTTGTTTGTTACTAATTTTTCTCCATATATAAATGTATGTTTGACACAACAGATTTACTATTGTCGTGATGTCACAACAAAACTCGATTGACCAAACCGTATTCCCCAATAATTATATTAGACATAACATTCTATTTTAATATCTACGAGACTGAGTTGACATTTATAAATTCGCACATCTAAGGTTAAAAAAAGAGTTTATTAAATAAATTGTAGGTTAAAAAATACATTTGGTTAAAATTTACACTTTATTATTTTGAATCTTAACTTGCGGTTATTTTGTCGAGTATTTTCAAAATTGTCACATTTTAGTCATATCAATTAACAAATTAGTCCATGTATTTCATATTTTATAACATTTTAAGTTGTACCTTGAATGGGTTCACACATTAAACAACATTAAATATTTTGTTAAAAATATTATTATATTTTAAGGAAAAACCAATCTCACTTGTATACTACTTTTTTATAGGTGATATTTTGGTAGTATCTATATTTATGTATTTCAACCCTATAACTTACACCAAAATAGTAAAAATATAATATCAAGTTCTTTCTTTTTTATTAGAACGAATGCCTTCCTTAGTGAGAAATTGAGAATGACTCAACTACCACATAGTACGTGTTAA

mRNA sequence

ATGGCCGAAAAATCAAGACGAGTCCCCAGGAAGATCAAGCCCCCGCCCAATCTCTGCCTCCGAAAACCAAGATCCGGCGACGCCAAGAAGACCACCAAGCCCCCGTCGCCAATGACCCTGTTCGAGCGCCTCCGCGAGGCTGTTTTCCGATTCATTATGCTGTGTGCTCTCTCAAAGGCCACAAATCATCATCCCGCCGCCGGAGCCACCTTCCAAGACGACGTAGTCGTAAGGCGGCGACACTCATATCCTAACGTCGACCACCACCACAGTGAAGCCGTCGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGACGAGGTAATTCTTGACCGTGGATCGGTGGATGACGCCGATGATGATATGACGGTGTCGGTGCCGGTGCCGGTCAGAACGAATGCCTTCCTTAGTGAGAAATTGAGAATGACTCAACTACCACATAGTACGTGTTAA

Coding sequence (CDS)

ATGGCCGAAAAATCAAGACGAGTCCCCAGGAAGATCAAGCCCCCGCCCAATCTCTGCCTCCGAAAACCAAGATCCGGCGACGCCAAGAAGACCACCAAGCCCCCGTCGCCAATGACCCTGTTCGAGCGCCTCCGCGAGGCTGTTTTCCGATTCATTATGCTGTGTGCTCTCTCAAAGGCCACAAATCATCATCCCGCCGCCGGAGCCACCTTCCAAGACGACGTAGTCGTAAGGCGGCGACACTCATATCCTAACGTCGACCACCACCACAGTGAAGCCGTCGCCGATTGCATCGAGTTCATCAAGATGAAGGCGTATTCCGACGACGAGGTAATTCTTGACCGTGGATCGGTGGATGACGCCGATGATGATATGACGGTGTCGGTGCCGGTGCCGGTCAGAACGAATGCCTTCCTTAGTGAGAAATTGAGAATGACTCAACTACCACATAGTACGTGTTAA

Protein sequence

MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKATNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDDADDDMTVSVPVPVRTNAFLSEKLRMTQLPHSTC*

Homology

[Close]

BLAST of CsaV3_6G047070 vs. NCBI nr
Match: KGN49339.2 (hypothetical protein Csa_003207 [Cucumis sativus])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120
           TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

Query: 121 ADDDMTVSVPVPVRTNAFLSEKLRMTQLPHSTC 154
           ADDDMTVSVPVPVRTNAFLSEKLRMTQLPHSTC
Sbjct: 121 ADDDMTVSVPVPVRTNAFLSEKLRMTQLPHSTC 153

[Close]

BLAST of CsaV3_6G047070 vs. NCBI nr
Match: KAA0025678.1 (Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK12553.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-50
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPP NLCLRKPRS DAKK  KPPS MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRG 117
           TNHHP AGA FQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD EVIL  G
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117

[Close]

BLAST of CsaV3_6G047070 vs. NCBI nr
Match: KAG6603914.1 (hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 175.6 bits (444), Expect = 3.2e-40
Identity = 101/134 (75.37%), Postives = 107/134 (79.85%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120
           TNHH +AGA FQDD VVRRR SY N DHHHSEAVADCIEFIK KAYSDD++ILDRGSV D
Sbjct: 61  TNHH-SAGAVFQDD-VVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSV-D 120

Query: 121 ADDDMTVSVPVPVR 135
           ADDDM VSVP+PVR
Sbjct: 121 ADDDMAVSVPLPVR 121

[Close]

BLAST of CsaV3_6G047070 vs. NCBI nr
Match: KAB1201821.1 (hypothetical protein CJ030_MR8G020135 [Morella rubra])

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-15
Identity = 63/132 (47.73%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPPNLCLRKPRSGD-AKKTTKPPSPMTLFERLREAVFRFIMLCALSKAT 62
           EK +  PRK+K   +LC+ + RS     K  K PSPMTL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPRKLK--TSLCIPRFRSNSCTNKINKAPSPMTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDDA 122
           NH   +           +R  YPN D HHSEAVA+CIEFIK KA +D+E   +R S   +
Sbjct: 62  NHSECSADA--------QRCYYPN-DPHHSEAVAECIEFIKKKASTDEE---NRDSTASS 119

Query: 123 DDDMTVSVPVPV 134
               T    +PV
Sbjct: 122 SIHGTPEAVIPV 119

[Close]

BLAST of CsaV3_6G047070 vs. NCBI nr
Match: TXG60569.1 (hypothetical protein EZV62_015142 [Acer yangbiense])

HSP 1 Score: 91.7 bits (226), Expect = 6.1e-15
Identity = 64/136 (47.06%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPPNLCLRK--PRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 62
           EK R  PRK+K   NLC+ +      + +   K  +P+TL ER REAVFR IML ALSKA
Sbjct: 2   EKPRGSPRKMK--TNLCIPRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALSKA 61

Query: 63  TN--HHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRGS 122
           TN  HH   G++         R  Y   D HHSEAVADCIEFIK KA +DD E   D  +
Sbjct: 62  TNDHHHHTVGSSRVS------RSYYSPADPHHSEAVADCIEFIKKKAVADDNENGRDSSA 121

Query: 123 VDDADDDMTVSVPVPV 134
               DD   + +PVPV
Sbjct: 122 STSIDDSTELIIPVPV 129

[Close]

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL
Match: A0A0A0KGN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.6e-69
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120
           TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

Query: 121 ADDDMTVSVPVPVR 135
           ADDDMTVSVPVPVR
Sbjct: 121 ADDDMTVSVPVPVR 134

[Close]

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL
Match: A0A5A7SHP0 (Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G001350 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 5.7e-51
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60
           MAEKSRRVPRKIKPP NLCLRKPRS DAKK  KPPS MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPANLCLRKPRSDDAKKNNKPPSAMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRG 117
           TNHHP AGA FQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD EVIL  G
Sbjct: 61  TNHHPTAGAAFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDHEVILIGG 117

[Close]

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL
Match: A0A6A1UNG7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G020135 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 63/132 (47.73%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPPNLCLRKPRSGD-AKKTTKPPSPMTLFERLREAVFRFIMLCALSKAT 62
           EK +  PRK+K   +LC+ + RS     K  K PSPMTL ER REAVFR IML A+SKAT
Sbjct: 2   EKPKASPRKLK--TSLCIPRFRSNSCTNKINKAPSPMTLLERFREAVFRLIMLSAMSKAT 61

Query: 63  NHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDDA 122
           NH   +           +R  YPN D HHSEAVA+CIEFIK KA +D+E   +R S   +
Sbjct: 62  NHSECSADA--------QRCYYPN-DPHHSEAVAECIEFIKKKASTDEE---NRDSTASS 119

Query: 123 DDDMTVSVPVPV 134
               T    +PV
Sbjct: 122 SIHGTPEAVIPV 119

[Close]

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL
Match: A0A5C7HUV3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 64/136 (47.06%), Postives = 77/136 (56.62%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPPNLCLRK--PRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 62
           EK R  PRK+K   NLC+ +      + +   K  +P+TL ER REAVFR IML ALSKA
Sbjct: 2   EKPRGSPRKMK--TNLCIPRLIKAGNNGRNKNKNLTPVTLLERFREAVFRLIMLSALSKA 61

Query: 63  TN--HHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRGS 122
           TN  HH   G++         R  Y   D HHSEAVADCIEFIK KA +DD E   D  +
Sbjct: 62  TNDHHHHTVGSSRVS------RSYYSPADPHHSEAVADCIEFIKKKAVADDNENGRDSSA 121

Query: 123 VDDADDDMTVSVPVPV 134
               DD   + +PVPV
Sbjct: 122 STSIDDSTELIIPVPV 129

[Close]

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL
Match: W9SCS0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026688 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.9e-15
Identity = 62/130 (47.69%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 3   EKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKATN 62
           EK R    K     N C+ + R+  +   TK  +PMTL ER REAVFR IM  ALSK+ N
Sbjct: 2   EKPRGGSPKRVMKTNFCIPRLRNNSSTTKTKGITPMTLLERFREAVFRLIMFSALSKSAN 61

Query: 63  HHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDD-EVILDRGSVDDA 122
            HP +G     DV   RRH +P+ DH HSEAVA+CIEFIK KA  D+  V   R SV+ A
Sbjct: 62  -HPGSG-----DV---RRHYHPSNDHRHSEAVAECIEFIKKKAGPDESRVSSARSSVNSA 121

Query: 123 DDDMTVSVPV 132
            D   + VP+
Sbjct: 122 ADQGVIHVPI 122

The following BLAST results are available for this feature:

BLAST of CsaV3_6G047070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49339.2	1.1e-80	100.00	hypothetical protein Csa_003207 [Cucumis sativus]	[more]
KAA0025678.1	1.2e-50	91.45	Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa] >TYK1...	[more]
KAG6603914.1	3.2e-40	75.37	hypothetical protein SDJN03_04523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB1201821.1	6.1e-15	47.73	hypothetical protein CJ030_MR8G020135 [Morella rubra]	[more]
TXG60569.1	6.1e-15	47.06	hypothetical protein EZV62_015142 [Acer yangbiense]	[more]

BLAST of CsaV3_6G047070 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN3	3.6e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505880 PE=4 SV=1	[more]
A0A5A7SHP0	5.7e-51	91.45	Transducin/WD40 repeat-like superfamily protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A6A1UNG7	3.0e-15	47.73	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR8G020135 PE=4 SV=1	[more]
A0A5C7HUV3	3.0e-15	47.06	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_015142 PE=4 SV=1	[more]
W9SCS0	3.9e-15	47.69	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_026688 PE=4 SV=1	[more]

BLAST of CsaV3_6G047070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR35111	F10A5.9-RELATED	coord: 11..133
None	No IPR available	PANTHER	PTHR35111:SF1	EXPRESSED PROTEIN	coord: 11..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G047070.1	CsaV3_6G047070.1	mRNA