CsaV3_6G046690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G046690
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 27556135 .. 27557579 (+)
RNA-Seq ExpressionCsaV3_6G046690
SyntenyCsaV3_6G046690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTGCCAGCAAGTTTCGCAAGATTCAGTTTCATTATTACATTTCTTAGCCTTTTCAACCAACCTCTTGAAGAATGAGAATATGCCCTTTTCGTTAGTTTTGTAATTGTTATATGAAAAACCACTCAGTAGAATCGGGGGTGCACAACAGAATGGACCAAACCAAAGATGTATATTTGGTCTCTAGTCTTTTTTAAGTGTTGAATAGGTCTTTAAATGTTTAACTTTGTGTCAAAAACTTATGTTTTAATATGTTCATAACAAATTCGAAGTTTAAAAAAAAGTAATTTCTCTATTGATATTAACAATAAATTTAAATGGTTTGTCTAACGGAATTCTAATCTTAAGTGAGAGATATGAATTATATCTGTAATTTTACAAGTTTAGAATCACATAAACAAAAAATTCAATGCTGATATATTAAACTTTATAGAACAATAATCTATTTGCAGATGAAATTGAAAATTTTGGAACCTTTACCTCAAATTATTCAAAAGCCTCAGCGAGTAAAATAGGGATAAATTCCTTCACAGCAGTATGAAGTAAAACCAAACACAATTTCTCTCTCAACCTTTGCATATTTAGTGATGGCATCAACAAGCAAATTACAAGAACGATGAACAAAAGTAAATACACAAGAATCAAAACTAGTTTGCAGCGAAGAAAAATTATAGACCCAGCAGCAGATTTCATCATTAACAATTGATTTTTCCAAAAGAAGATTGGTCACTTTGATGCAATCAGATCCCAGGATGATACGACTGCAGTTCAGAGAAATCGAGAGAACCCATCTTTAATTAGTGTATGTATATGTTGAAGTATTTGTTAAACCCCCATAAATAAATGCTAAAACCAATTTAAAAAAAAAATTATATAAAAAAAAGACAAAATTATGAACATAAATTATTACCGGGAAATGCCGGCGTTTGTGGTGTAATGGCAGAATCCATGTTTTCGCGTATTCATCCCTCGTTCATCTAAATCCACTTCTCTGATTCAGTGGAGATCCACAAAACGGAGCTATATATTCACTTCAACGTTTCAGGTTATTTCTCTTCCTTCTCTTCTCCATCTTCTTTTGTTTCAAATTCAGCTCTCACTTCAACATTCATTCATCTTTCCACTTTCCACTTTCCACTTTCCACTTTCTCTCCTACAAGCTGAAACCCATCCGAATTCGCAAATCTAATTATTGGATTTAAGTTTTTGTTGATGTCCTCAGCTTTCGTTCCTCCAATTGAATTTCTATTTCAGTCGCTTCTACTTTCCTTTTCGAATCTTGCACCTATGCTTTTCTCCTGGATATCTTGAACACGCTACCGTTGTTTGATTCTACTCTCACTTGCTTCTGCCTTTTAGTATTGGGTATTAATCAATTTTCATGCTATTTGTCTTTAAATCGAGCTTATAAATTTTATTTTTAGCCTGCAGGACATGTTCTAA

mRNA sequence

ATGAGTTGCCAGCAAGTTTCGCAAGATTCAGTTTCATTATTACATTTCTTAGCCTTTTCAACCAACCTCTTGAAGAATGAGAATATGCCCTTTTCATCCCAGGATGATACGACTGCAGTTCAGAGAAATCGAGAGAACCCATCTTTAATTAGTAATCCATGTTTTCGCGTATTCATCCCTCGTTCATCTAAATCCACTTCTCTGATTCAGTGGAGATCCACAAAACGGAGCTATATATTCACTTCAACGTTTCAGGACATGTTCTAA

Coding sequence (CDS)

ATGAGTTGCCAGCAAGTTTCGCAAGATTCAGTTTCATTATTACATTTCTTAGCCTTTTCAACCAACCTCTTGAAGAATGAGAATATGCCCTTTTCATCCCAGGATGATACGACTGCAGTTCAGAGAAATCGAGAGAACCCATCTTTAATTAGTAATCCATGTTTTCGCGTATTCATCCCTCGTTCATCTAAATCCACTTCTCTGATTCAGTGGAGATCCACAAAACGGAGCTATATATTCACTTCAACGTTTCAGGACATGTTCTAA

Protein sequence

MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIPRSSKSTSLIQWRSTKRSYIFTSTFQDMF*
Homology
[Close]
BLAST of CsaV3_6G046690 vs. NCBI nr
Match: KGN48873.1 (hypothetical protein Csa_003628 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 2.4e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIP 60
          MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIP
Sbjct: 1  MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIP 60

Query: 61 RSSKSTSLIQWRSTKRSYIFTSTFQDMF 89
          RSSKSTSLIQWRSTKRSYIFTSTFQDMF
Sbjct: 61 RSSKSTSLIQWRSTKRSYIFTSTFQDMF 88

[Close]
BLAST of CsaV3_6G046690 vs. ExPASy TrEMBL
Match: A0A0A0KH43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504540 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIP 60
          MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIP
Sbjct: 1  MSCQQVSQDSVSLLHFLAFSTNLLKNENMPFSSQDDTTAVQRNRENPSLISNPCFRVFIP 60

Query: 61 RSSKSTSLIQWRSTKRSYIFTSTFQDMF 89
          RSSKSTSLIQWRSTKRSYIFTSTFQDMF
Sbjct: 61 RSSKSTSLIQWRSTKRSYIFTSTFQDMF 88

The following BLAST results are available for this feature:
BLAST of CsaV3_6G046690 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48873.12.4e-40100.00hypothetical protein Csa_003628 [Cucumis sativus][more]
BLAST of CsaV3_6G046690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G046690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH431.2e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G504540 PE=4 SV=1[more]
BLAST of CsaV3_6G046690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G046690.1CsaV3_6G046690.1mRNA