CsaV3_6G045760 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G045760
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 27100404 .. 27102362 (-)
RNA-Seq Expression	CsaV3_6G045760
Synteny	CsaV3_6G045760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTAAGAATACGTGTTCCATTAGAATTTTGAAATACTGATATATTCTATTATAATTCACACAACTATCCCAACTTTGTTGCCAAGAAACCCCTTTATTTGGGTATTGGCACAATCAAAGAAGACCCTTCAATGAAATACAATATACATGTGTATATTTTATAGATATACAATATAATACAATCAAATTTCTCCACAAAGGGTCCACCCATAGAAAAAGTAAAACCAAAATGCCCAAAAAACCAGACTAAGTCATCAAAGGTCACTTTTTTTTATTTCTTTTATACACTACACCGACTTGTCAGCCTTATCCACAATCATACCTCAATCTGAATATAAATTATGTCATCCTCCTAAAGGGGTCTCCTCAAAATCAACTAAGAGGGAGAGTTGAAAAATCACAGCCATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGAGTTCCTCTATTGGGTTTATATATATATATATATATTGTAAATGTTTCTCGTCTCTCTCTCTCTCTCTCTCAAATCTGTACATTTTTTTTTTCTTTTTTCCTTTTTTGGATTCTATTAGTTTTGAAATGCTTTTGAATTCGAGAGAAGAAGGGTGGGATTGTATTATGATTTGATGATTATTATAGGGTTTGAATTAACCATATGAATGTTGGGAAAAGATGGATGATTTGGTTTTCAAGAAATCATCGAGAGTTGGCCACTTAGTTGGTGCTTTTAAATATGTGATATGGTGGATGGATGAGGCTGTTCAGATCCCATATTGAAAAATCAATGAATTTAGTTGTTCATAGTTATGATTTGGGATCAATCCACCATCTAAGATGGTATCAATAATAATTTGATATTTATATTTGATATTAAATCGTAGACAAAATTTTAAATAAATTACCTTGTGAGCTTTTCAACTCGTAATTATAATTATGGTCGTGATATCTCTTTATGTAATTGATATATAGTTATGAAATTTTGGTGGCATTCAAAGAAAGTGAAAGTGAAATTAAGAGTGTAAATCAAATGATGGTAAAGGTTGTTATGGTGACACATTTGTGTCTTATCTGAGAGGCCATTTTGGTTTAATTTATTCAAAATTTCGTCAATTTAGGTTTGGTTTTTTTGTAAGAAGGAAAAGTTACTTTTTAAAGTACTTTTCAAATTCATTGTTTTCAAGTCCAAGCTGTTAAAAGTTAGGTTTTGAACATCCAAAGTCTATTTCTACATTAAATCTCATATAAAGTGTAAATTTGATCATCTAATGGGGATATATACGGATGTATATAAAAATAATTTACTAAGAAGTTCATCTAATGAATTATGAATTTTGTTTTGGTTTGGTTTTGTTTCCAAAGTTGTAGTTGTAGTTGATTCCAAGTTCTATCCATGGTTGCCATAATAACTATCCATATCACCATATTTAGATATATACTTTTTTGTGTTTGTCCAAAATCACTTTTTCTTGTTTGACATGAACTAAAATAAATATAAAATCGTTTAAAAAACGAATTAGGTTATTGGTAATTTTTGTTGGGTGATTTTCAATCAACCACTCCCAAAATGGATGTCTAATTCAGTTTTCTTTTTATAAAATATTGGAATAAAAGAATGTACATCATTAAATTATTTATAAAACAAACAATTATATACTAACATAACTATTTCTCAAATCAAAAAATATAATAACAATAATGATTCAAAATCTAAACAATAATGATTCAAAATCATTTCTAAA

mRNA sequence

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Coding sequence (CDS)

ATGGCGGATATTGCAATTCTTGTAGCAGAGGAATACGAGAGGAGGACGAAGAATCCAAGGCGAGGTCAAGAGATGATCAGGCAAGAGCTTCAAGAGTTGGGTTCTTCTGGGGTTTCCATATCTGCAACTGCTACTTCAATTAGGATGAAGAAGATGATGGAAATGGCAAAAAAGCATAATTACTCTGCTGAGATGTCGGAATTCAATTGGGTTTTTGAACCCAAATCTCAAATTGGTCGAGCTGCTTCCACTGGGTTCTTCTCAGCTTGA

Protein sequence

MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHNYSAEMSEFNWVFEPKSQIGRAASTGFFSA*

Homology

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_011657992.1 (uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical protein Csa_003490 [Cucumis sativus])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_016899241.1 (PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo] >KAA0036271.1 uncharacterized protein E6C27_scaffold18G00700 [Cucumis melo var. makuwa] >TYK12665.1 uncharacterized protein E5676_scaffold255G002530 [Cucumis melo var. makuwa])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTK+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: XP_038882836.1 (uncharacterized protein LOC120073972 [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 4.2e-24
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNP + QE  +QELQ+L +SGVSISATATSIRMKKMMEMAK+  
Sbjct: 1  MADIAILVAEEYERRMKNPTQVQE--KQELQDL-ASGVSISATATSIRMKKMMEMAKQ-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
           ++++SEF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -NSQISEFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: KAG6604012.1 (hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034176.1 hypothetical protein SDJN02_03903, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 6.1e-23
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPR+ QE   Q+L++L SSGVSISATA++IRMKKMME+A +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQAQE--TQKLEDL-SSGVSISATASAIRMKKMMEIAIQ-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
           +AEM+EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -NAEMTEFKWVFEPKSQIGRAASTGFFSA 83

[Close]

BLAST of CsaV3_6G045760 vs. NCBI nr
Match: KAG6594853.1 (hypothetical protein SDJN03_11406, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 62/89 (69.66%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPR+ Q+    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRTKNPRQEQK-AAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAQPNEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL
Match: A0A0A0KK75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.7e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN
Sbjct: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAEMSEFNWVFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 89

[Close]

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL
Match: A0A5A7T3Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002530 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTK+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL
Match: A0A1S4DTC5 (uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 79/89 (88.76%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERRTK+PRR QEM+RQELQ+LG SGVSISATATSI MKKMMEMAK++N
Sbjct: 1  MADIAILVAEEYERRTKHPRRDQEMVRQELQDLG-SGVSISATATSITMKKMMEMAKRNN 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
          YSAE+SEFN VFEPKSQIGRAASTGFFSA
Sbjct: 61 YSAEISEFNRVFEPKSQIGRAASTGFFSA 88

[Close]

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL
Match: A0A6J1KS29 (uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.9e-18
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPR+ +E    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQ-EEKAAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            AE +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAERNEFKWVFEPKSQIGRAASTGFFSA 82

[Close]

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL
Match: A0A6J1HEA8 (uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC111463202 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.4e-17
Identity = 61/89 (68.54%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 1  MADIAILVAEEYERRTKNPRRGQEMIRQELQELGSSGVSISATATSIRMKKMMEMAKKHN 60
          MADIAILVAEEYERR KNPR+ Q+    E+Q+L  SGVSISATA+  R+KKMME+  +  
Sbjct: 1  MADIAILVAEEYERRMKNPRQEQK-AAAEVQDL-VSGVSISATAS--RVKKMMELELE-- 60

Query: 61 YSAEMSEFNWVFEPKSQIGRAASTGFFSA 90
            A+ +EF WVFEPKSQIGRAASTGFFSA
Sbjct: 61 -LAQPNEFKWVFEPKSQIGRAASTGFFSA 82

The following BLAST results are available for this feature:

BLAST of CsaV3_6G045760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657992.1	1.6e-39	100.00	uncharacterized protein LOC105435930 [Cucumis sativus] >KGN48782.1 hypothetical ...	[more]
XP_016899241.1	7.2e-32	88.76	PREDICTED: uncharacterized protein LOC103485003 [Cucumis melo] >KAA0036271.1 unc...	[more]
XP_038882836.1	4.2e-24	78.65	uncharacterized protein LOC120073972 [Benincasa hispida]	[more]
KAG6604012.1	6.1e-23	76.40	hypothetical protein SDJN03_04621, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6594853.1	1.0e-17	69.66	hypothetical protein SDJN03_11406, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_6G045760 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK75	7.7e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G501230 PE=4 SV=1	[more]
A0A5A7T3Y6	3.5e-32	88.76	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DTC5	3.5e-32	88.76	uncharacterized protein LOC103485003 OS=Cucumis melo OX=3656 GN=LOC103485003 PE=...	[more]
A0A6J1KS29	4.9e-18	69.66	uncharacterized protein LOC111497122 OS=Cucurbita maxima OX=3661 GN=LOC111497122...	[more]
A0A6J1HEA8	2.4e-17	68.54	uncharacterized protein LOC111463202 OS=Cucurbita moschata OX=3662 GN=LOC1114632...	[more]

BLAST of CsaV3_6G045760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36067:SF1	EXPRESSED PROTEIN	coord: 1..89
None	No IPR available	PANTHER	PTHR36067	EXPRESSED PROTEIN	coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G045760.1	CsaV3_6G045760.1	mRNA