CsaV3_6G045740 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G045740
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 27088769 .. 27090266 (-)
RNA-Seq ExpressionCsaV3_6G045740
SyntenyCsaV3_6G045740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAAGGTACAGAAAATGGGGGTTATGGTTATCTGACCCCTACGCTAGGGGCCAACGAAACACCAAGGCCACCAAACACGTTTTCCACTATAAATACAACAAGGGTTTAAGCCATTCAATACCCACCGATTGAACAAATTAAAAGCCCACTGAAACATTTGTAGAAATTTCTTCATTTCATTTCCTTTTCTTCTGTATAAACCATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAGGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAACTTCCCATCACGCCGCCGGCGGAATTGCCGGAAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCAGGCCACCTCTAATTCCTGAAAACAGGCCTCCTCTGGCTTTTACTTTCTCAATAGAAATTTCATGCCAGAGTCGAAGCTTTTAGTGCTTTTTTTCTTTTCTTTTCTTTTTCTACGTCTTGTGTAAATTTTTGAACTTCCTTCGGTGATGTGATCTGGCTAGAAATCAAACTAAGGAAGGTACAAATTATGGGTTATATCTTCTTCTTTCTCTCTTCGTCTCCATTTTTGGTGTGAATTTTGGAGCGTTGTTGAAATATAGTTCTAGTTCATTAAAACACGTTAACAAGTCAAAAAATGATTCTGATACTTCTGAACATGGGAGAACTGGTTAATTAATTCGTAGTAATTATGCATTCAATTGTAGAATTTGTCCCTATATCTTGAAAACAAAGTTGTAATTTTTTAGTACAACCATGGTGTAATGAGATCCAACATTCTAATCCTATTCTAAATTGTAAAACTGGTCACTTTAACTTAAGAAAACTATAATTTAGTCTCAATAACAAGGATTATTTGTGATAGCTTCATTCAATTATAAGGATTTCTCTTAGACTTTCTGCACTTAAAAGAGACTAAATCTAAACTTATGAAACAATAGAAACTAAATTAATTTCCCTTCAATTATAGTGATAAATTTCGTCTTTTTATCTTCAATTCACGTTTAGGGAAGACTTTAGACAATATCGACAATATCTTTTTTTTTTTCTCGAAATAAGGAGACAGCATCTTCTTGTTGGTACCAGTGTTTAGATAGAAATAAGAGGGTTTAGAATTAAATACTATCTATCTATATCTATATAGGTCAATTTATGGGGGGAATAGCATTGTCATTTCCTAAAGTCTTGAAAAAAATGGAGATTAAATATGGATTTGTTCGATGTAATTTTCGATGTAATTGTTTGTCGGGGAAACTTTGTATTTGAAGTATTGTTTTGAAGAGGTAGGCCATTATTTGTTGTGGTCAATAATGATATATTACTCAATTATTGACTAATAAACTACTAAATTTAGTTTGTCAGTTTAGATGTATGCTGTCCCAAAATGTAATAACCTAATCAATATTTTTTTGAGAACCAACAAACAATATGGAAAATAG

mRNA sequence

ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAGGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAACTTCCCATCACGCCGCCGGCGGAATTGCCGGAAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCAGGCCACCTCTAATTCCTGA

Coding sequence (CDS)

ATGTCCTCCATGGGAGCTAGCTGCGCTAGGGTTTATGTAATGAAAAAGAAAGCAGAGGAAAAACTGCAGAGGATGGAGCAGGAGAGATCTGGCAGGAGAGAAGATTCCGTCAAACCTCCAAAAACTTCCCATCACGCCGCCGGCGGAATTGCCGGAAAATCCAGTAAAAAAGTCCATCCGGGTACCCTATTTGGGCTTCAGGCCACCTCTAATTCCTGA

Protein sequence

MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHPGTLFGLQATSNS*
Homology
BLAST of CsaV3_6G045740 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.6e-29
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTLFGLQATSNS 73
          GTLFGLQATSNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of CsaV3_6G045740 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 9.0e-25
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKTSHHAAGGIAGKSSKKV 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPKT+HH  GGIAGKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTLFGLQATSNS 73
          HPGT+FG+  TSNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of CsaV3_6G045740 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.3 bits (264), Expect = 1.1e-19
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTS-HHAAGGIAGKSSKKVH 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++ HHA GGIAGK+ KKVH
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGTLFGLQATSNS 73
          PG +F + A SNS
Sbjct: 61 PGNVFAVSANSNS 73

BLAST of CsaV3_6G045740 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 5.8e-16
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSS+GASCARVYVMKKK EEKLQRMEQE++GRRED VKP KT+HH  G  AG + KKVHP
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH-GGAFAGITCKKVHP 60

Query: 61 GTLFGLQATSNS 73
          GT+  + A++ S
Sbjct: 61 GTVISVPASNIS 71

BLAST of CsaV3_6G045740 vs. NCBI nr
Match: KAF4351893.1 (hypothetical protein F8388_020454 [Cannabis sativa])

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-04
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQER---SGRREDSVKPPKTSHHAAGGIAGKSSKK 60
          MSS+GASCA VYVM+K+ +EK+ RME+ER   SG      K     H   GG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPG 62
          VHPG
Sbjct: 61 VHPG 64

BLAST of CsaV3_6G045740 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.7e-30
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60

Query: 61 GTLFGLQATSNS 73
          GTLFGLQATSNS
Sbjct: 61 GTLFGLQATSNS 72

BLAST of CsaV3_6G045740 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED--SVKPPKTSHHAAGGIAGKSSKKV 60
          MSSMGASCARVYVMKKKAEEKLQRMEQERSGRRED  SVKPPKT+HH  GGIAGKSSKKV
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHHGGGGIAGKSSKKV 60

Query: 61 HPGTLFGLQATSNS 73
          HPGT+FG+  TSNS
Sbjct: 61 HPGTVFGVPPTSNS 74

BLAST of CsaV3_6G045740 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.0e-05
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHHAAGGIAGKSSKKVHP 60
          MSS+GASCA +YVM+K+ +EKL+RME+ER  + E SV+  K S    G      SKKVHP
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVSGSTIG-----RSKKVHP 56

Query: 61 G 62
          G
Sbjct: 61 G 56

BLAST of CsaV3_6G045740 vs. ExPASy TrEMBL
Match: A0A7J6E0F2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQER---SGRREDSVKPPKTSHHAAGGIAGKSSKK 60
          MSS+GASCA VYVM+K+ +EK+ RME+ER   SG      K     H   GG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPG 62
          VHPG
Sbjct: 61 VHPG 64

BLAST of CsaV3_6G045740 vs. ExPASy TrEMBL
Match: A0A7J6I0D6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.5e-04
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 1  MSSMGASCARVYVMKKKAEEKLQRMEQER---SGRREDSVKPPKTSHHAAGGIAGKSSKK 60
          MSS+GASCA VYVM+K+ +EK+ RME+ER   SG      K     H   GG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPG 62
          VHPG
Sbjct: 61 VHPG 64

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48780.11.6e-29100.00hypothetical protein Csa_002943 [Cucumis sativus][more]
KAA0036273.19.0e-2587.84hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667... [more]
KAG6604014.11.1e-1973.97hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6594855.15.8e-1669.44hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF4351893.15.1e-0451.56hypothetical protein F8388_020454 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGB87.7e-30100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1[more]
A0A5A7T0654.3e-2587.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9EUS95.0e-0554.10Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A7J6E0F22.5e-0451.56Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1[more]
A0A7J6I0D62.5e-0451.56Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 8..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..72
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..70
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G045740.1CsaV3_6G045740.1mRNA