CsaV3_6G045390 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G045390
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 26885611 .. 26885811 (+)
RNA-Seq Expression	CsaV3_6G045390
Synteny	CsaV3_6G045390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGAAAGAATGAAAACGAAGGAATATGTAGAGAAGAATCATGGAGATGGGAGAAAACTGAGAGACGGCGAGAGGCGAGGGCATGGTGGCGGGCGGAGTTGGACCACCGTCTCGGCGGCTGCGTCGTTGGTGAGAAGTATTGGAATGACGCATGCAATGACAAAATACACAATAACAAAAGAGAAAAGGAAGAACTGA

mRNA sequence

ATGAGAGAAAGAATGAAAACGAAGGAATATGTAGAGAAGAATCATGGAGATGGGAGAAAACTGAGAGACGGCGAGAGGCGAGGGCATGGTGGCGGGCGGAGTTGGACCACCGTCTCGGCGGCTGCGTCGTTGGTGAGAAGTATTGGAATGACGCATGCAATGACAAAATACACAATAACAAAAGAGAAAAGGAAGAACTGA

Coding sequence (CDS)

ATGAGAGAAAGAATGAAAACGAAGGAATATGTAGAGAAGAATCATGGAGATGGGAGAAAACTGAGAGACGGCGAGAGGCGAGGGCATGGTGGCGGGCGGAGTTGGACCACCGTCTCGGCGGCTGCGTCGTTGGTGAGAAGTATTGGAATGACGCATGCAATGACAAAATACACAATAACAAAAGAGAAAAGGAAGAACTGA

Protein sequence

MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTITKEKRKN*

Homology

[Close]

BLAST of CsaV3_6G045390 vs. NCBI nr
Match: KGN48745.1 (hypothetical protein Csa_004406 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 4.0e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTIT 60
          MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTIT
Sbjct: 1  MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTIT 60

Query: 61 KEKRKN 67
          KEKRKN
Sbjct: 61 KEKRKN 66

[Close]

BLAST of CsaV3_6G045390 vs. ExPASy TrEMBL
Match: A0A0A0KG91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499880 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTIT 60
          MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTIT
Sbjct: 1  MRERMKTKEYVEKNHGDGRKLRDGERRGHGGGRSWTTVSAAASLVRSIGMTHAMTKYTIT 60

Query: 61 KEKRKN 67
          KEKRKN
Sbjct: 61 KEKRKN 66

The following BLAST results are available for this feature:

BLAST of CsaV3_6G045390 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48745.1	4.0e-27	100.00	hypothetical protein Csa_004406 [Cucumis sativus]	[more]

BLAST of CsaV3_6G045390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G045390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG91	1.9e-27	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G499880 PE=4 SV=1	[more]

BLAST of CsaV3_6G045390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G045390.1	CsaV3_6G045390.1	mRNA