CsaV3_6G043140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G043140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative
Location	chr6: 25389592 .. 25389968 (-)
RNA-Seq Expression	CsaV3_6G043140
Synteny	CsaV3_6G043140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATATAAGAAAATGATGAAGAGAAATGGTAGGGCTTGTGGGGTTTGTATTATTATTGTTTTGGTTTTATGTTTAAGCTACGAGGGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATCAATTGGTACTTCGCCACCACCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCCCAACAATTTACGACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCCCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGAAAAACTCTTAAATTTTAACATTATAGATATATCCTGCATTCCATTGTTTCTCTCTCCCTCTCTCCCCTCCCCCCCCC

mRNA sequence

TATATATATAAGAAAATGATGAAGAGAAATGGTAGGGCTTGTGGGGTTTGTATTATTATTGTTTTGGTTTTATGTTTAAGCTACGAGGGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATCAATTGGTACTTCGCCACCACCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCCCAACAATTTACGACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCCCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA

Coding sequence (CDS)

TATATATATAAGAAAATGATGAAGAGAAATGGTAGGGCTTGTGGGGTTTGTATTATTATTGTTTTGGTTTTATGTTTAAGCTACGAGGGGGTTTACGTAGAATGCCGGCATCTCAAGTCGTCAAGATCATGCAAGAAATGCTCCAAATCAATTGGTACTTCGCCACCACCGCCACCGGCTCATCTGAAGTCTGCCGGAAATCCCCAACAATTTACGACGATCAAAGCAGAATTACCTCAAGATTTTCGTCCTACATCCCCTGGCCATAGTCCTGGAGTTGGCCACCATATCAACAATTGA

Protein sequence

YIYKKMMKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN*

Homology

[Close]

BLAST of CsaV3_6G043140 vs. NCBI nr
Match: KAE8647497.1 (hypothetical protein Csa_004238, partial [Cucumis sativus])

HSP 1 Score: 211.1 bits (536), Expect = 4.5e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   YIYKKMMKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPA 60
           YIYKKMMKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPA
Sbjct: 1   YIYKKMMKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPA 60

Query: 61  HLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
           HLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN
Sbjct: 61  HLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of CsaV3_6G043140 vs. NCBI nr
Match: KAG6595044.1 (hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 2.6e-22
Identity = 64/102 (62.75%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 7   MKRNGRACGVCI-IIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPP--------P 66
           MK   R  GVC+ I+ L+LCLS+E VYVECRHLKSSR CKKC+K I  +PP         
Sbjct: 1   MKTTQRLSGVCVFILFLILCLSHEVVYVECRHLKSSR-CKKCTKFI--NPPAVNLGGKKA 60

Query: 67  PPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
            P  +  AGN Q+F T KAE PQDFRPTSPGHSPGVGHHINN
Sbjct: 61  DPGDVGLAGNRQEFKTSKAEQPQDFRPTSPGHSPGVGHHINN 99

[Close]

BLAST of CsaV3_6G043140 vs. NCBI nr
Match: XP_028124097.1 (precursor of CEP8-like [Camellia sinensis])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 7   MKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPP-----AH 66
           M + G  C    ++VL+LC +   V V+ RHLK +R+CKKC +  G +           +
Sbjct: 1   MGKCGMVCACAFLLVLILC-NEVFVGVDGRHLK-ARTCKKCMRGYGKNNMKATMGSGGGN 60

Query: 67  LKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
             SAG P   T  K E   DFRPT PGHSPG+GH +NN
Sbjct: 61  KPSAGKPLTDTANKVEYADDFRPTQPGHSPGIGHSLNN 96

[Close]

BLAST of CsaV3_6G043140 vs. NCBI nr
Match: PNT27018.1 (hypothetical protein POPTR_007G041400 [Populus trichocarpa])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 15  GVCIII-VLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSP--PPPPAHLKSAGNPQQF 74
           G CI++  L+LC  +E V+VE R LKS   CKKCS +   S   P    H  +AG  Q  
Sbjct: 9   GACIVLFFLILC--HEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGLAAGQEQ-- 68

Query: 75  TTIKAELPQDFRPTSPGHSPGVGHHINN 100
            T K +   DFRPT PGHSPGVGH +NN
Sbjct: 69  -TSKVKYVDDFRPTEPGHSPGVGHSVNN 91

[Close]

BLAST of CsaV3_6G043140 vs. NCBI nr
Match: EOX91365.1 (TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao])

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 12  RACGVCI-IIVLVLCLSYEGVYVECRHLKSSRSCKKCSK---SIGTSPPPPPAHLKSAGN 71
           R   VC+ ++VL+LC       VE RHL+ S+SCKKCS+      T          S G+
Sbjct: 5   RLKNVCVLLLVLILCQEIFVYNVEGRHLR-SKSCKKCSRQRADQNTLKMTKNGSHSSTGS 64

Query: 72  PQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
            Q+ T+ KAE   DFRPTSPGHSPGVGH I N
Sbjct: 65  GQEQTS-KAENIDDFRPTSPGHSPGVGHSIKN 94

[Close]

BLAST of CsaV3_6G043140 vs. ExPASy Swiss-Prot
Match: Q058G9 (Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 5.6e-04
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 49  KSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
           K++  SPPPPP     +G             +DFRPT+PGHSPG+GH +++
Sbjct: 63  KAMQFSPPPPPPPPSQSGGKD---------AEDFRPTTPGHSPGIGHSLSH 104

[Close]

BLAST of CsaV3_6G043140 vs. ExPASy TrEMBL
Match: A0A0A0KGB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.2e-35
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 22  LVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 81
           +V  + YEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD
Sbjct: 1   MVGLVGYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQD 60

Query: 82  FRPTSPGHSPGVGHHINN 100
           FRPTSPGHSPGVGHHINN
Sbjct: 61  FRPTSPGHSPGVGHHINN 78

[Close]

BLAST of CsaV3_6G043140 vs. ExPASy TrEMBL
Match: A0A2K1ZP13 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041400 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 15  GVCIII-VLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSP--PPPPAHLKSAGNPQQF 74
           G CI++  L+LC  +E V+VE R LKS   CKKCS +   S   P    H  +AG  Q  
Sbjct: 9   GACIVLFFLILC--HEVVHVEGRPLKSVELCKKCSTNNDNSQNVPENGNHGLAAGQEQ-- 68

Query: 75  TTIKAELPQDFRPTSPGHSPGVGHHINN 100
            T K +   DFRPT PGHSPGVGH +NN
Sbjct: 69  -TSKVKYVDDFRPTEPGHSPGVGHSVNN 91

[Close]

BLAST of CsaV3_6G043140 vs. ExPASy TrEMBL
Match: A0A061DGB8 (tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao OX=3641 GN=TCM_000584 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 44/92 (47.83%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 12  RACGVCI-IIVLVLCLSYEGVYVECRHLKSSRSCKKCSK---SIGTSPPPPPAHLKSAGN 71
           R   VC+ ++VL+LC       VE RHL+ S+SCKKCS+      T          S G+
Sbjct: 5   RLKNVCVLLLVLILCQEIFVYNVEGRHLR-SKSCKKCSRQRADQNTLKMTKNGSHSSTGS 64

Query: 72  PQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
            Q+ T+ KAE   DFRPTSPGHSPGVGH I N
Sbjct: 65  GQEQTS-KAENIDDFRPTSPGHSPGVGHSIKN 94

[Close]

BLAST of CsaV3_6G043140 vs. ExPASy TrEMBL
Match: A0A2C9URG2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.3e-07
Identity = 42/89 (47.19%), Postives = 50/89 (56.18%), Query Frame = 0


Query: 12  RACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSK-SIGTSPPPPPAHLKSAGNPQQ 71
           R  G CI + LVL L +E + VE RHLK  + CKKC + S   S        K  G  ++
Sbjct: 5   RVMGTCIFL-LVLMLCHEVLVVEGRHLKPHKLCKKCFRLSDQNSLNVSEDTQKLLGGQEK 64

Query: 72  FTTIKAELPQDFRPTSPGHSPGVGHHINN 100
             T K +   DFRPT PGHSPGVGH INN
Sbjct: 65  --TSKMDYVDDFRPTEPGHSPGVGHSINN 90

[Close]

BLAST of CsaV3_6G043140 vs. ExPASy TrEMBL
Match: V7CCL6 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G245600g PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.8e-06
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 2   IYKKMMKRNGRACGVCIIIVLVLCLSYEGVYVECRHLKSSRSCKKCSKSIGTSPPPPPAH 61
           +Y+ ++  N R   +  ++ L   LS++ ++V  RHL+S   C++CSK    S      H
Sbjct: 59  LYQDIIMENTRLRNIAFVLFLFFILSHQSLFVHGRHLRSP-LCEECSKHQNNS---MSGH 118

Query: 62  LKSAGNPQQFTTIKAELP-QDFRPTSPGHSPGVGHHINN 100
             S     Q  + + E    DFRPT+PGHSPGVGH INN
Sbjct: 119 GISDHEVHQEGSRRVEYEVDDFRPTTPGHSPGVGHSINN 153

[Close]

BLAST of CsaV3_6G043140 vs. TAIR 10
Match: AT5G66815.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-05
Identity = 21/51 (41.18%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 49  KSIGTSPPPPPAHLKSAGNPQQFTTIKAELPQDFRPTSPGHSPGVGHHINN 100
           K++  SPPPPP     +G             +DFRPT+PGHSPG+GH +++
Sbjct: 63  KAMQFSPPPPPPPPSQSGGKD---------AEDFRPTTPGHSPGIGHSLSH 104

The following BLAST results are available for this feature:

BLAST of CsaV3_6G043140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647497.1	4.5e-51	100.00	hypothetical protein Csa_004238, partial [Cucumis sativus]	[more]
KAG6595044.1	2.6e-22	62.75	hypothetical protein SDJN03_11597, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_028124097.1	1.2e-08	41.84	precursor of CEP8-like [Camellia sinensis]	[more]
PNT27018.1	1.0e-07	48.86	hypothetical protein POPTR_007G041400 [Populus trichocarpa]	[more]
EOX91365.1	5.2e-07	47.83	TRNA Delta(2)-isopentenylpyrophosphate transferase, putative [Theobroma cacao]	[more]

BLAST of CsaV3_6G043140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q058G9	5.6e-04	41.18	Precursor of CEP5 OS=Arabidopsis thaliana OX=3702 GN=CEP5 PE=1 SV=1	[more]

BLAST of CsaV3_6G043140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB6	2.2e-35	93.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G490770 PE=4 SV=1	[more]
A0A2K1ZP13	5.1e-08	48.86	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_007G041400 PE=3 ...	[more]
A0A061DGB8	2.5e-07	47.83	tRNA Delta(2)-isopentenylpyrophosphate transferase, putative OS=Theobroma cacao ...	[more]
A0A2C9URG2	3.3e-07	47.19	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_13G126300 PE=3 SV=...	[more]
V7CCL6	2.8e-06	37.37	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_003G245600g PE=3 ...	[more]

BLAST of CsaV3_6G043140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66815.1	4.0e-05	41.18	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66
None	No IPR available	PANTHER	PTHR33348:SF28	PRECURSOR OF CEP7	coord: 16..99
IPR033250	C-terminally encoded peptide	PANTHER	PTHR33348	PRECURSOR OF CEP5	coord: 16..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G043140.1	CsaV3_6G043140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048364	root development