CsaV3_6G042740 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G042740
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Calcium-dependent protein kinase 33
Location	chr6: 25100491 .. 25102020 (-)
RNA-Seq Expression	CsaV3_6G042740
Synteny	CsaV3_6G042740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATCTTTACATGTTTCGCAATTCTTTTGATTAATTCTTCTCACGAATATCATCAATCATGTTTAGTTGTTGATTCGACGAACTAATATCTTGTGAAGGTTTTAGATATCACAAACTCCCAAGGCTTTCTTTGTCAAGTTCTGAGAGAAAAAATGGAAAAGAATAGAACAATCCAGTTTTAAGTAAAAGTAGAAACTTTCGTTGAAACATGGAAGCTTTTGAGAAGCAAAAAGAAAAAGAGTTTGTTAACCAAAGACCCACTGATTTTGCAAAACCTTGGGCGCTCAAAACCCACAGGAAACTAAACCTTTGGCTTTTCATCACACACAAAACGATATCCATTAAATCAAATTGAAATCTCCACTTTCTTTCATTCTATAAAAATCCCTCCAATTCTCTGCAATTACCTCTCTCTTCCACAAAACCAAAATGGCTTTCATGATTTCCAAAGCTTCGACGTCTTTCCCAGAAACTGAGAATCCCCGGAACTCGGACCTCAGCCGGAACGACGGCGTTTCGAGCCATGTTTTCTTGAAATCTGCTGGCAAAATGGACAGAGATGTGGTTCTTCGCCGCATTCGTTTCTATAAGCGATTGAACAAAGTGAAAAGGACCTTGGAAAGTCTTGTCGGTAGCGGGGACGGTGGTTCGGAGGTTGCAAATGCGATGGCGGATGAGGGCGAGAAATGGTGGCTGCAACAGCATGATGTTTTTATGGGTAACTGAATCGTAGATGGTTTTTGTGATAGCTCGATTCTCTTCTAATTTAGGTGTGATTTCTTTGATGTAAATGAAATGATGTTGAATGCATTTGCTTGCAAGCGAATTGCAACAAGTGGTTTTAAGGAAAAGGGGTGTCGGTTAATATAGCAATTCAGTCCAAAGATTATTAGATACAACACAATCCATAACAAATTTGTAGATAGAGCAAAACTTGGATCCTTTCTCATATGTTTGCTTGAACTCCAACAATTTAATGCCTATAAATAGGAAGTGTGATCCATATGGAAGCCAAGTAAAAGTAGAGACTTAGACAACCTTATAGTGAAGAAAAGTTGGTGAGATTGTGTATGAAATAAATGAAAAGGTATCCTCTCAAATGTGTTTATTGTAAATTTCAAATAAAAGTTCTTTTCCTTCTAAAAGAAAAGAAGTTGTCTTTCTCCATTTTGAACCAATTTCTTCACCAAGAAATGTAGCCCTTTTACATACCATGGATTTAACCATCAAAGTGATAAAAATTTATTAAAGATTTAATTTGTTTTTAAGACCTTTATTATATATATTAACAAGGAAAATTGTCAAATAAAAGAATGACAAAATATTTACAAATTAATAAATTTTGTTTTTATATATATATATCGTTTTTTGTATTTTTTATAAACCTCTGGTCCTCTAATAATAATAATAATAATAGGGAGAGGATTGAATGAAATGGTGGTCTTTGGGCCACAACAAGCAGCCCACCAAAAGCCCAAATACGAAAAACGTCAAATCTCACAAGAAAACGAAAGGAAAATACAAGGCAT

mRNA sequence

ATGGCTTTCATGATTTCCAAAGCTTCGACGTCTTTCCCAGAAACTGAGAATCCCCGGAACTCGGACCTCAGCCGGAACGACGGCGTTTCGAGCCATGTTTTCTTGAAATCTGCTGGCAAAATGGACAGAGATGTGGTTCTTCGCCGCATTCGTTTCTATAAGCGATTGAACAAAGTGAAAAGGACCTTGGAAAGTCTTGTCGGTAGCGGGGACGGTGGTTCGGAGGTTGCAAATGCGATGGCGGATGAGGGCGAGAAATGGTGGCTGCAACAGCATGATGTTTTTATGGGTAACTGA

Coding sequence (CDS)

ATGGCTTTCATGATTTCCAAAGCTTCGACGTCTTTCCCAGAAACTGAGAATCCCCGGAACTCGGACCTCAGCCGGAACGACGGCGTTTCGAGCCATGTTTTCTTGAAATCTGCTGGCAAAATGGACAGAGATGTGGTTCTTCGCCGCATTCGTTTCTATAAGCGATTGAACAAAGTGAAAAGGACCTTGGAAAGTCTTGTCGGTAGCGGGGACGGTGGTTCGGAGGTTGCAAATGCGATGGCGGATGAGGGCGAGAAATGGTGGCTGCAACAGCATGATGTTTTTATGGGTAACTGA

Protein sequence

MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN*

Homology

[Close]

BLAST of CsaV3_6G042740 vs. NCBI nr
Match: KGN48470.1 (hypothetical protein Csa_003921 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 2.3e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60
          MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK
Sbjct: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60

Query: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN 99
          RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN
Sbjct: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN 98

[Close]

BLAST of CsaV3_6G042740 vs. NCBI nr
Match: TYK12932.1 (hypothetical protein E5676_scaffold255G005270 [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60
          MAF+ISKAS+SF ETENP +SDLSRND VSSHV LKSAGKMDRDVVLRRIRFYKRLNKVK
Sbjct: 1  MAFVISKASSSFSETENPGDSDLSRNDAVSSHVLLKSAGKMDRDVVLRRIRFYKRLNKVK 60

Query: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN 99
          RTLESLVGSGDGGSEVANAMADE EKWWLQQHDVF+GN
Sbjct: 61 RTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVFLGN 98

[Close]

BLAST of CsaV3_6G042740 vs. NCBI nr
Match: ONH96670.1 (hypothetical protein PRUPE_7G144900 [Prunus persica])

HSP 1 Score: 70.5 bits (171), Expect = 9.4e-09
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MAFMISKASTSFPETENPRNSDLSRNDG-----------VSSHVFLKSA--GKMDRDVVL 60
           MAF+IS+A+   P+ + P  S+  + DG           ++SHV+LKS+    MDRDVVL
Sbjct: 1   MAFIISRAT---PQQKQPSFSEAEKKDGHKELSEAQSSSITSHVYLKSSAGAPMDRDVVL 60

Query: 61  RRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 96
           RRIR +K L+KVK   +SL+GS    + +A+      ++ WL Q D+F
Sbjct: 61  RRIRHHKNLSKVKSAFQSLMGSSQEAASMASV-----DQTWLHQEDIF 100

[Close]

BLAST of CsaV3_6G042740 vs. NCBI nr
Match: CAA2957516.1 (Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 0


Query: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLK------SAGKMDRDVVLRRIRFYK 60
          MAFMISK   SF E+E     +    D V++ +FLK      SA ++D+DVVLRR+RF+K
Sbjct: 1  MAFMISKTQPSFSESEKV-TEEAETLDSVTTQLFLKSSSSRRSAQRLDKDVVLRRLRFHK 60

Query: 61 RLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 96
           LN+VK T +++    DGG+     ++D  EK WL+Q D F
Sbjct: 61 TLNRVKNTFQAIRAPQDGGT-----VSDYNEK-WLEQGDNF 94

[Close]

BLAST of CsaV3_6G042740 vs. NCBI nr
Match: CAB4287548.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 69.7 bits (169), Expect = 1.6e-08
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 1   MAFMISKASTSFPETENPRNSDLSRNDG-----------VSSHVFLKS--AGKMDRDVVL 60
           MAF+ISKA    P+ + P  S+  + DG           ++ HV+LKS  A  MDRDVVL
Sbjct: 1   MAFIISKAP---PQQKQPSFSEAEKKDGHEELSEAQSSSITRHVYLKSSAAAAMDRDVVL 60

Query: 61  RRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 96
           RRIR +K L+KVK   ++L+GS    S +A+      ++ WL Q D+F
Sbjct: 61  RRIRHHKNLSKVKSAFQALMGSSQEASSMASV-----DQTWLPQEDIF 100

[Close]

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL
Match: A0A0A0KFI9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489630 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60
          MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK
Sbjct: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60

Query: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN 99
          RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN
Sbjct: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN 98

[Close]

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL
Match: A0A5D3CNJ6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005270 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 5.3e-42
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 1  MAFMISKASTSFPETENPRNSDLSRNDGVSSHVFLKSAGKMDRDVVLRRIRFYKRLNKVK 60
          MAF+ISKAS+SF ETENP +SDLSRND VSSHV LKSAGKMDRDVVLRRIRFYKRLNKVK
Sbjct: 1  MAFVISKASSSFSETENPGDSDLSRNDAVSSHVLLKSAGKMDRDVVLRRIRFYKRLNKVK 60

Query: 61 RTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVFMGN 99
          RTLESLVGSGDGGSEVANAMADE EKWWLQQHDVF+GN
Sbjct: 61 RTLESLVGSGDGGSEVANAMADEAEKWWLQQHDVFLGN 98

[Close]

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL
Match: M5VVD5 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G144900 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.5e-09
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   MAFMISKASTSFPETENPRNSDLSRNDG-----------VSSHVFLKSA--GKMDRDVVL 60
           MAF+IS+A+   P+ + P  S+  + DG           ++SHV+LKS+    MDRDVVL
Sbjct: 1   MAFIISRAT---PQQKQPSFSEAEKKDGHKELSEAQSSSITSHVYLKSSAGAPMDRDVVL 60

Query: 61  RRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 96
           RRIR +K L+KVK   +SL+GS    + +A+      ++ WL Q D+F
Sbjct: 61  RRIRHHKNLSKVKSAFQSLMGSSQEAASMASV-----DQTWLHQEDIF 100

[Close]

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL
Match: A0A6J5VNT1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45541 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.7e-09
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 1   MAFMISKASTSFPETENPRNSDLSRNDG-----------VSSHVFLKS--AGKMDRDVVL 60
           MAF+ISKA    P+ + P  S+  + DG           ++ HV+LKS  A  MDRDVVL
Sbjct: 1   MAFIISKAP---PQQKQPSFSEAEKKDGHEELSEAQSSSITRHVYLKSSAAAAMDRDVVL 60

Query: 61  RRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 96
           RRIR +K L+KVK   ++L+GS    S +A+      ++ WL Q D+F
Sbjct: 61  RRIRHHKNLSKVKSAFQALMGSSQEASSMASV-----DQTWLPQEDIF 100

[Close]

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL
Match: M5WA34 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G144800 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.3e-08
Identity = 43/108 (39.81%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 1   MAFMISKASTSFPETENPRNSDLSRNDG-----------VSSHVFLKS--AGKMDRDVVL 60
           MAF+ISKA    P+ + P  S+  + DG           ++ HV+LKS  A  MDRDVVL
Sbjct: 1   MAFIISKAP---PQQKQPSFSEAEKKDGHEELSEAQSSSITRHVYLKSSAAAAMDRDVVL 60

Query: 61  RRIRFYKRLNKVKRTLESLVGSGDGGSEVANAMADEGEKWWLQQHDVF 96
           RRIR +K L+KVK   ++L+GS    + +A+      ++ WL Q D+F
Sbjct: 61  RRIRHHKNLSKVKSAFQALMGSSQEAASMASV-----DQTWLHQEDIF 100

The following BLAST results are available for this feature:

BLAST of CsaV3_6G042740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48470.1	2.3e-47	100.00	hypothetical protein Csa_003921 [Cucumis sativus]	[more]
TYK12932.1	1.1e-41	90.82	hypothetical protein E5676_scaffold255G005270 [Cucumis melo var. makuwa]	[more]
ONH96670.1	9.4e-09	39.81	hypothetical protein PRUPE_7G144900 [Prunus persica]	[more]
CAA2957516.1	1.2e-08	43.56	Hypothetical predicted protein [Olea europaea subsp. europaea]	[more]
CAB4287548.1	1.6e-08	40.74	unnamed protein product [Prunus armeniaca]	[more]

BLAST of CsaV3_6G042740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFI9	1.1e-47	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489630 PE=4 SV=1	[more]
A0A5D3CNJ6	5.3e-42	90.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
M5VVD5	4.5e-09	39.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G144900 PE=4 SV=1	[more]
A0A6J5VNT1	7.7e-09	40.74	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45541 PE=4 S...	[more]
M5WA34	1.3e-08	39.81	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G144800 PE=4 SV=1	[more]

BLAST of CsaV3_6G042740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR35324:SF5	BNAC07G16390D PROTEIN	coord: 1..97
None	No IPR available	PANTHER	PTHR35324	BNAA08G03750D PROTEIN	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G042740.1	CsaV3_6G042740.1	mRNA