CsaV3_6G042150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G042150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein of unknown function (DUF3511)
Locationchr6: 24673741 .. 24675438 (+)
RNA-Seq ExpressionCsaV3_6G042150
SyntenyCsaV3_6G042150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCTTTTCCTTCCATTGGTTCAAAATCCCGAACTTAAAAACGAAGTTTTTATATGCCAAGTTCTTCAAATAAGCAATACGCCCGAAAGTAGAGAGAATATTGCGGCAATAGTTACTGAAGAGGATATGATGATGAAGATGCCAGCAGTGACAATAATTTGGTGACATTATTTTTGTCACGAACACCATGCTTTCTAACATTCCATCCAATCCAAGGTGGATTTTAAAAAGTTGTGGTTTGAAATCAAAAGAGAGGATGATTGATATGATCGGAAAGCGTTGCATTCGTACAGGTGGAATGTTCACATTATAGGGTTTTGTGTACTAACAGAGCCAACATTTTATTGATTGGTACCTAAATCCATTTAAATTAGGATAATGGCAAGTGATACAAGACTTATAATTAAGTGTGTATTAAGAATTGCAACTATACCAAAATTTAATTGTAATAGACTATCGTTAGATCAACACACATATAAACGATAGGTTGTATCATTGATAGACTATATTGTAACATATTTTAAGAATAGCAAATATATTAAAATTTAATTATATTATAATTGATCAATATATCTCCGGTTTTATAGAAGATGAGTGGAATGTTTGTCTTTTCAATGGTCCATTAAATTATGGTAGGTCATGATCATCTCTCTAATCCAACTCACCATCATCCTAACTCCATCCCTTAAAAGGTTTCCACCACAAACAACACCCACTAATGGGTGCTCCCACCAGCACCACTTATGTTTTGAATCTCTTTTTCACCCAAAGATATCTTGCCTAAATGAACGATGGATCTCTTTTTAAAGTTCGTGGTTTTATTTTCCTTTTTAACAGAGGTAGACCGTAGAAGTGGGATTTAGACATTTTGTGTCTAATGATAATCTTAAATTGATTTGTCAGCATTACGTTCTTTATTGATCGATGTACATCATTCTCCAACTCCACATCTCAAACACATATGTTAGAGTATTTTCTTACCTCAATTTAATACCTCAATTCACCGCCTTCAACTCTCCCCGAATTTGCAATTCGACCAAAATAACAACAAAACAGAGGCACTGTTTTCTTCCCTCCTTTTCCATAATTCCACCTCATCGCCAGCTATTTCATTTCTATAAACATCTACCAGAACCACATAGTAAATCATTCATAAATCCATTGAATAGCAAAATGCTTATACAATAATCCAATTACTCTATAGTCACAATTCTTGATGTGACATAAAACAAAGACTTCTTGCTAATTAAAATAATATGTGTTCTTAATGCTCTCACTATTGAAATGGCAAAATGTAAGACCATAATATGAAAGAAAGCTAACAATATCTACTAACAAAGAAACTTTGATATGATTTATACCCACACAAAGATTTCTAGTATCACGTATTTATAGGAGAGAAGACAAACTTATGAACCATATCCAAAGTTTCTAATGATGGAGAGAAGCAAATCATTAAGTGGGTCTTACTCAAAAGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAATCCCAAATCATACAGCTTCAATGGAACAATCAAAAAGGAAGATGTGGCCAATCAAGAGCTCAAGAGAAGGCAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGAAAGCTGAAGAAGTCCTTAAGAAACAGCTTCAAGTGGATCAAGAACAAGATTTCCCACAGCTTTTATGATGATTGA

mRNA sequence

ATGCACCTTTTCCTTCCATTGGTTCAAAATCCCGAACTTAAAAACGAAGTTTTTATATGCCAAGTTCTTCAAATAAGCAATACGCCCGAAAGTAGAGAGAATATTGCGGCAATAGTTACTGAAGAGGATATGATGATGAAGATGCCAGCAGAGAGAAGACAAACTTATGAACCATATCCAAAGTTTCTAATGATGGAGAGAAGCAAATCATTAAGTGGGTCTTACTCAAAAGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAATCCCAAATCATACAGCTTCAATGGAACAATCAAAAAGGAAGATGTGGCCAATCAAGAGCTCAAGAGAAGGCAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGAAAGCTGAAGAAGTCCTTAAGAAACAGCTTCAAGTGGATCAAGAACAAGATTTCCCACAGCTTTTATGATGATTGA

Coding sequence (CDS)

ATGCACCTTTTCCTTCCATTGGTTCAAAATCCCGAACTTAAAAACGAAGTTTTTATATGCCAAGTTCTTCAAATAAGCAATACGCCCGAAAGTAGAGAGAATATTGCGGCAATAGTTACTGAAGAGGATATGATGATGAAGATGCCAGCAGAGAGAAGACAAACTTATGAACCATATCCAAAGTTTCTAATGATGGAGAGAAGCAAATCATTAAGTGGGTCTTACTCAAAAGCCTATGGAGATGTGAGGTTTGGATTTGAGGACAATCCCAAATCATACAGCTTCAATGGAACAATCAAAAAGGAAGATGTGGCCAATCAAGAGCTCAAGAGAAGGCAAAGAGTAGCTACTTACAATATGTATTCAATGGAAGGAAAGCTGAAGAAGTCCTTAAGAAACAGCTTCAAGTGGATCAAGAACAAGATTTCCCACAGCTTTTATGATGATTGA

Protein sequence

MHLFLPLVQNPELKNEVFICQVLQISNTPESRENIAAIVTEEDMMMKMPAERRQTYEPYPKFLMMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSMEGKLKKSLRNSFKWIKNKISHSFYDD*
Homology
BLAST of CsaV3_6G042150 vs. NCBI nr
Match: KAE8647476.1 (hypothetical protein Csa_003778 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0

Query: 1   MHLFLPLVQNPELKNEVFICQVLQISNTPESRENIAAIVTEEDMMMKMPAERRQTYEPYP 60
           MHLFLPLVQNPELKNEVFICQVLQISNTPESRENIAAIVTEEDMMMKMPAERRQTYEPYP
Sbjct: 1   MHLFLPLVQNPELKNEVFICQVLQISNTPESRENIAAIVTEEDMMMKMPAERRQTYEPYP 60

Query: 61  KFLMMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNM 120
           KFLMMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNM
Sbjct: 61  KFLMMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNM 120

Query: 121 YSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           YSMEGKLKKSLRNSFKWIKNKISHSFYDD
Sbjct: 121 YSMEGKLKKSLRNSFKWIKNKISHSFYDD 149

BLAST of CsaV3_6G042150 vs. NCBI nr
Match: TYK12983.1 (hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-37
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0

Query: 64  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 123
           MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSF+GT+KKEDV NQELKRRQRVATYNMYSM
Sbjct: 1   MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSM 60

Query: 124 EGKLKKSLRNSFKWIKNKISHSFYD 149
           EGKLKKSLRNSFKWIKNKISHSFY+
Sbjct: 61  EGKLKKSLRNSFKWIKNKISHSFYN 85

BLAST of CsaV3_6G042150 vs. NCBI nr
Match: EXB64484.1 (hypothetical protein L484_006721 [Morus notabilis])

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNG-TIKKED-----VANQELKRRQRVATY 124
           M+RSKSL G YS  YGD RFGFED  KSYSFNG +++ ED      +N E+KRR+RVA Y
Sbjct: 1   MDRSKSLPGHYSSLYGDARFGFEDRAKSYSFNGPSVRVEDHELGSSSNPEMKRRKRVANY 60

Query: 125 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           NMY+MEGKLK SLRNSFKWIK+K   ++YD+
Sbjct: 61  NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDE 91

BLAST of CsaV3_6G042150 vs. NCBI nr
Match: PON52269.1 (hypothetical protein TorRG33x02_308860 [Trema orientale])

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-21
Identity = 58/91 (63.74%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKK------EDVANQELKRRQRVATY 124
           MERSKSL G YS  YGD RFGFED  KSYSFNG   +          N E+KRR+RVA Y
Sbjct: 1   MERSKSLPGHYSSLYGDGRFGFEDRSKSYSFNGPSSQAADDEFASSGNPEMKRRKRVAAY 60

Query: 125 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           NMY+MEGKLK SLRNSFKWIK+K   ++YDD
Sbjct: 61  NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDD 91

BLAST of CsaV3_6G042150 vs. NCBI nr
Match: PRQ49076.1 (hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis])

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-21
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKED---------VANQELKRRQRV 124
           ME+SKS SG YS AY + RFGFED PKSYSFNG + K +          +N EL+RR+RV
Sbjct: 1   MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 125 ATYNMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           A YNMY+MEGK K SLRNSFKWIK K   +FYD+
Sbjct: 61  ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

BLAST of CsaV3_6G042150 vs. ExPASy TrEMBL
Match: A0A0A0KFC2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 4.4e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 64  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 123
           MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM
Sbjct: 1   MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 60

Query: 124 EGKLKKSLRNSFKWIKNKISHSFYDD 150
           EGKLKKSLRNSFKWIKNKISHSFYDD
Sbjct: 61  EGKLKKSLRNSFKWIKNKISHSFYDD 86

BLAST of CsaV3_6G042150 vs. ExPASy TrEMBL
Match: A0A5D3CM35 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005800 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.2e-37
Identity = 81/85 (95.29%), Postives = 84/85 (98.82%), Query Frame = 0

Query: 64  MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSM 123
           MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSF+GT+KKEDV NQELKRRQRVATYNMYSM
Sbjct: 1   MMERSKSLSGSYSKAYGDVRFGFEDNPKSYSFDGTVKKEDVVNQELKRRQRVATYNMYSM 60

Query: 124 EGKLKKSLRNSFKWIKNKISHSFYD 149
           EGKLKKSLRNSFKWIKNKISHSFY+
Sbjct: 61  EGKLKKSLRNSFKWIKNKISHSFYN 85

BLAST of CsaV3_6G042150 vs. ExPASy TrEMBL
Match: W9RA26 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006721 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.4e-22
Identity = 58/91 (63.74%), Postives = 70/91 (76.92%), Query Frame = 0

Query: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNG-TIKKED-----VANQELKRRQRVATY 124
           M+RSKSL G YS  YGD RFGFED  KSYSFNG +++ ED      +N E+KRR+RVA Y
Sbjct: 1   MDRSKSLPGHYSSLYGDARFGFEDRAKSYSFNGPSVRVEDHELGSSSNPEMKRRKRVANY 60

Query: 125 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           NMY+MEGKLK SLRNSFKWIK+K   ++YD+
Sbjct: 61  NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDE 91

BLAST of CsaV3_6G042150 vs. ExPASy TrEMBL
Match: A0A2P5BU01 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_308860 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 58/91 (63.74%), Postives = 65/91 (71.43%), Query Frame = 0

Query: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKK------EDVANQELKRRQRVATY 124
           MERSKSL G YS  YGD RFGFED  KSYSFNG   +          N E+KRR+RVA Y
Sbjct: 1   MERSKSLPGHYSSLYGDGRFGFEDRSKSYSFNGPSSQAADDEFASSGNPEMKRRKRVAAY 60

Query: 125 NMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           NMY+MEGKLK SLRNSFKWIK+K   ++YDD
Sbjct: 61  NMYAMEGKLKSSLRNSFKWIKSKFVDTYYDD 91

BLAST of CsaV3_6G042150 vs. ExPASy TrEMBL
Match: A0A2P6RRL4 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 57/94 (60.64%), Postives = 67/94 (71.28%), Query Frame = 0

Query: 65  MERSKSLSGSYSKAYGDVRFGFEDNPKSYSFNGTIKKED---------VANQELKRRQRV 124
           ME+SKS SG YS AY + RFGFED PKSYSFNG + K +          +N EL+RR+RV
Sbjct: 1   MEKSKSFSGYYSTAYTEARFGFEDRPKSYSFNGPVSKVEGPSSASGSGNSNPELERRKRV 60

Query: 125 ATYNMYSMEGKLKKSLRNSFKWIKNKISHSFYDD 150
           A YNMY+MEGK K SLRNSFKWIK K   +FYD+
Sbjct: 61  ANYNMYTMEGKFKSSLRNSFKWIKGKFVDNFYDE 94

BLAST of CsaV3_6G042150 vs. TAIR 10
Match: AT4G09890.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-12
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 64  MMERSKSLSGSYSKAYGDVRFGFEDN-PKSYSFNGTIKKEDVANQELKRRQRVATYNMYS 123
           MM+ SKS +  YS ++    FG++ N   SY+FNG     D    E+KR++RVA+YN+++
Sbjct: 1   MMKGSKSYT-EYSSSFSTDEFGYDQNRSNSYNFNGPCINTD---PEMKRKKRVASYNLFA 60

Query: 124 MEGKLKKSLRNSFKWIKNKIS 144
            E KLK +L+NSFKWIKNK S
Sbjct: 61  TEEKLKSTLKNSFKWIKNKFS 77

BLAST of CsaV3_6G042150 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 55.5 bits (132), Expect = 4.4e-08
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 0

Query: 74  SYSKAYGDVRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSMEGKLKKSLRN 133
           SYS +YG       D  K  S     K   + + EL+R++RVA+Y MY +EGK+K S RN
Sbjct: 30  SYSASYGTRENNIYDVKKEKSI-ARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRN 89

Query: 134 SFKWIKNKISHSFY 148
           SF+W+K + +   Y
Sbjct: 90  SFRWLKQRYTQVVY 102

BLAST of CsaV3_6G042150 vs. TAIR 10
Match: AT1G72720.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 31/82 (37.80%), Postives = 49/82 (59.76%), Query Frame = 0

Query: 69  KSLSGSYSKAYGDVRFGFED-NPKSYSFNGTIKK--EDVANQELKRRQRVATYNMYSMEG 128
           +S S S   AY +     +D N KS   N   KK  + +   E++R++RVA+YN+Y +EG
Sbjct: 43  RSYSTSTYNAYQNPTIVRDDSNNKSKRSNKVKKKGFKGLCEAEIQRKKRVASYNVYGVEG 102

Query: 129 KLKKSLRNSFKWIKNKISHSFY 148
           ++K S++ SFKW K   S++ Y
Sbjct: 103 RVKGSMKKSFKWFKETCSNAVY 124

BLAST of CsaV3_6G042150 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 104 VANQELKRRQRVATYNMYSMEGKLKKSLRNSFKWIKNK---ISHSF 147
           +++ E+KR++R+A Y  Y++EGK+K +L+N F+WIKNK   I H F
Sbjct: 65  LSDAEMKRKKRIARYKAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

BLAST of CsaV3_6G042150 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-06
Identity = 29/70 (41.43%), Postives = 42/70 (60.00%), Query Frame = 0

Query: 74  SYSKAYGD--VRFGFEDNPKSYSFNGTIKKEDVANQELKRRQRVATYNMYSMEGKLKKSL 133
           SYS +Y D   R   + NPK    + +       + +L+R++RV +Y  Y++EGKLK S 
Sbjct: 42  SYSTSYTDYPTRIPEDQNPKK-GRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSF 101

Query: 134 RNSFKWIKNK 142
           R SFKWIK+K
Sbjct: 102 RKSFKWIKDK 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647476.11.2e-76100.00hypothetical protein Csa_003778 [Cucumis sativus][more]
TYK12983.12.5e-3795.29hypothetical protein E5676_scaffold255G005800 [Cucumis melo var. makuwa][more]
EXB64484.11.1e-2163.74hypothetical protein L484_006721 [Morus notabilis][more]
PON52269.13.3e-2163.74hypothetical protein TorRG33x02_308860 [Trema orientale][more]
PRQ49076.14.3e-2160.64hypothetical protein RchiOBHm_Chr2g0117891 [Rosa chinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFC24.4e-40100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G486830 PE=4 SV=1[more]
A0A5D3CM351.2e-3795.29Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
W9RA265.4e-2263.74Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_006721 PE=4 SV=1[more]
A0A2P5BU011.6e-2163.74Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_308860 PE=4 SV... [more]
A0A2P6RRL42.1e-2160.64Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0117891 PE=4... [more]
Match NameE-valueIdentityDescription
AT4G09890.12.3e-1248.15Protein of unknown function (DUF3511) [more]
AT5G11970.14.4e-0840.54Protein of unknown function (DUF3511) [more]
AT1G72720.11.1e-0637.80Protein of unknown function (DUF3511) [more]
AT2G47480.11.8e-0647.83Protein of unknown function (DUF3511) [more]
AT2G19460.12.4e-0641.43Protein of unknown function (DUF3511) [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021899Protein of unknown function DUF3511PFAMPF12023DUF3511coord: 106..146
e-value: 7.4E-21
score: 73.7
NoneNo IPR availablePANTHERPTHR33193:SF41SUBFAMILY NOT NAMEDcoord: 65..144
NoneNo IPR availablePANTHERPTHR33193DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATEDcoord: 65..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G042150.1CsaV3_6G042150.1mRNA