CsaV3_6G041750 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041750
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 24323389 .. 24327436 (-)
RNA-Seq ExpressionCsaV3_6G041750
SyntenyCsaV3_6G041750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTTCCCCATTTTCATACTGGTATTTGAAGTGGGTTTATGGTTTCAGTTGATCTCAAGAAGTTGGAATTTTTGAGGATCATTGAGATCACTCGAATTTGGACAAATATGGGTTCTTAGTTTATAATATGGAAAAAGCGAAGATTATTGTTCATTTCTTTTGTTAATTGCAAGTTTTAGTTATTGAAGTTTCAAGCTTATGTTTAATAATAAGTACACATTTTCTTCTTTTAAAATGCTTCATACTAAACCCTTCGTTTGTTATTGATTTTTTCAATATATGTATTTGATTGTAATAGTTGGTATAGTATTTAATGATTTTTTTCTCTAACTTTCAATATTCGAACTAATAATAAGTTTTAAAAATCTCAATATTATAATTAAAACAAACACAGCTTAACTGAAATACAATGTGTGTTGGCTCGGTGATAATAAACACTCGTTTATGAAATATAAAAAGTGAGTTTAAAATTGAATATTGGAATCCTAACTTGGTAATTTGTTGGCTGGGTTGTCAATTTGTCGTATCCATCATCTTTAGCATATATGGTTGTTGTCGTCACTCTCCATTGATGACGTTCTTGTTGTAGTCACTTAAATGTCTCAAAGTAAAAGTTGTTTTTATAATTGAGTTATGGACCATTCCTTCTAGGCATGAGGAATGTATAATTTCAAATTTGTTTTTAGATGCATAAAATGTACAACATGGTTCATCTCAAATAGTGCGTCTTTTCAATTTAGATGCGTATAAATTTATTATCTAACGAAGTTCATTGATATATAGAGTCACAACATTATTGCTAACAAAAATGTTTGAGAAATGTTTCAAAACTTTGAAAGTGGGATGAAGTGAACAAAAAGAACGTAGATTGACACGTGACAAAAGAAATGGGACACCGTAAAAAGAAAGGAAGAAGACACAATGTTTGAGCATGTTCACTTGATTGGTTCGGGAATGAAAAATTTTTTAATGATAAAGTTGGTATATCACTTACCTTTGAGTATCATGCCACCTATTTATTACTAGACCAACACGTATGTTTTTGTTACTTCCAACTTTTAGATGAAATTTATGTTATTTATGACCCAAATCTTATATTTTGAATGTAAGAACTATTAATATACATGGTATGCCACTTTAGTAAATAAATCAAAAAACATCATTGGAAGTCTTGATACCAATTATACATCTAAAATATATATCTAAACATTGATGAACATATCACTAATGTGTTTGAAAAAATGGCATAATAAAATCAAGACAATTACGAAGTAAAGAAGTTATTTTTACATTTGCAAGTATTAGTTAGTCATTCATTATAAGTTCTATAAAATTTAACATAGATTATGTGTAGAAAAAGGAAAGAAAGAAAAAGGGAAACACATTGTTGATTATTAAATTTGGTTTGTAACAAAAAGAAAAGGAAACGACTCCTTGAAATTAAAAACAAAAAAAAAAAAGGAAAAACAGAACTCATTGAAATTCTCAATAATTTAGATGAAAAGATTGAAGAAATATATATAATTATCGCGAAAAGAAAAACTGTGTTCTCTTCTCGCCCCCAAAGTCTTTGAACCCTTTTTCGCCAATTGCTACTTCTTCACTCTTCATCTTCTTCCTTCCACTCACTCTCCAAACATGCCCAAAATATCCGCTTTCAACATTGATTTTGCTTAGTTCGCGCCTATTTTCTCCTTCAATCATATTCTAGGGTTACACCGTTCGCTGTTTTCTGCCGGAAGCTCTCTTCTTTCATGTGAGTTCTATGTTTCCCTCTTCCTTTAATTCTTTTACAGTTTTTGTTGTATGGATGTTTTCGTATCTGGGTCTTGATCTTTTGCTTCTTTTATGTGGGACTGTATGTGGGTCGAGGTTCTTCGACTTCAAAGTTTGGCCCTTTCCGGTTATTACTCCCCATATCCCCATCGCTAAGAACGACGTTTTTTGCTTCTTTGTTTTTTATTTGTTTTTTTTTCTCGAGTGTATTTTTTCTTCTGTGCTCGAGATTCTTTGTGCTTATGGGTATCTTTGGGAATAGATGACTTGGGTATGAATTGGGATTTTCTTTTGGCCATATGGTGAAGTATTTCAAATGACAGGTAGTTTTTTTTTTTTTTTTTTTTTTTGAGAAACGGAGGTGATCTACATAGAACTCTTGTTCAACTGGATTTTAGGTGAAGTTAAGTTCGTATATTGACTGAGTAGTTGGTGAATTGAAGATTACGGTCTGGTGTCCAAAAGGAATGCTATACTATGGAGTTAATAAATCCTCTTTTTTTTTTTTTTTAATATTTGATTGTTGAAAGTGGGTTTTCTTTAGAAAGAAAAGTTTCAGAGGACTTCTGATTTTTCCCATGGAATTACTGCACGTGTACTCCATGATTGCTTTCACACCGTCGTGACACCCAATTCAATTTTCTTAGCTTACAAGTTATATATCTTCTAGCATGGTCTTTGCATTCAATCGATTTTTGGAGGAGTATGAGGTAGGAGCTCAGGTTACCCCTCTAGATGCGGCCATGACGTTCTATTAGGGGTCTCAAAATAGTGGACATTGCGCCCCATGTTATTGTTGAAGGCAAGTTTTTTGGTTGTTGCTTTAGAAAGATGGCGGGGGCACACATGACTTTTTTGCCTCGTTTAATCTTTTCTTACAAGTGAAATCCTTGTGTCTGGTTGGGAGCTTGTGCAAGGATTTATCCAAATGATTGTAACCGAAAGAAAACTTCTCTAAGCACATCTTGTTGGTGCTTGCCTCATAAAAGAAAAAGGTGAGTTGTGTGCAGATTGGTAGTCTTTGGAGGAATCTTGGTGTTGGCATATATGGAGTAGCTCGTGCCTTGTTTATTTTATAGTTGTCGTTGGAATATGATTTATAAGTGATGTCATTGGAATATAGAATCTGGAGGATTTTGAAGACTAAGGTTTGAATGTTAAGATTTTATGTAGTAGTACTGATTATCTGGTTCTGGTAACGAAAAGATCTTGCACAAGTGGTTGGAATTTCAAGGTAGGTATCAACCTATTTGAATCTTGATCACATTCTTTGGAGCTCAAATTTTCTTTGGCTTTTTGAAGTCTATTATTTTGATGTATTTGACTTTCCGTTTGCTAGACAAAGAGGGTCTAAGGTGATGATTGAGTAGTTTCTTCTCCATTCGGATTTTTGGTAGAATAGATGGTTCTTGTTCCAAGTGGGGTTTTGTGTTGTGTTCTGAGGCGAGAGGAATAATAAGACCTTTAGCCGTTGAGAATGACTGTAGCAATGTTTCTTCTCTCACTAGATTCTATATTTTTCTTTGGGTGTTAGTGACAGTGTTTGTTAATTGTTTTTTTTGGGTCTTATTTGAATTGGTTGGAGGCCTAGTGGGGCTTGATTTTTTGGATGTTCTTATAGTCTTTCATTTTTTTTTCCTTAATGGAAGTTTTTTTCTTTCTGAAAAGGAAACATAACTTTTCGTTGAAAAAATGAAAAGGGAAGAATGTCAAAAAATACAATAACTATTAAGAGAAGAAAAATAAAATAATACAATCCTTTTAAGATACAACGAGGAAAAGACACCAAAAAGCAAACACTTAAAACCTAACAAACTAACTCAATGAAAGTTCAATTCCAGTTCATTAAATATTGGGTTTCAGGTCTTAGTAGTTAAAGCATTTGTAATTTGACTGATTTTTTGTTTGTGAGTAGTAAGTTAGATTATTATTGTCATTTATATTTCTTATTAAAGCTTTAGGCTGAATCTTAAATAATTTAGTTACTGGATGTATATTTATTAATTTACCCCTTGCTGAAGTCTTAGGTTCTTTTTCCTGCCAAAGTTAATTGATTAGACCCCAACTTATTAGGTTCCTTGATAGATACCCTCTTCTTTAGTTAATGTATCACGTAGAGTGTGCTAATGTCAACATATAATTTTCTGCAGTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAAGGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCACTACAAGAGCAATTGGGCATAAGCAAAAATTCATGGAACTAA

mRNA sequence

ATGTTTTTCCCCATTTTCATACTGTTCGCGCCTATTTTCTCCTTCAATCATATTCTAGGGTTACACCGTTCGCTGTTTTCTGCCGGAAGCTCTCTTCTTTCATTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAAGGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCACTACAAGAGCAATTGGGCATAAGCAAAAATTCATGGAACTAA

Coding sequence (CDS)

ATGTTTTTCCCCATTTTCATACTGTTCGCGCCTATTTTCTCCTTCAATCATATTCTAGGGTTACACCGTTCGCTGTTTTCTGCCGGAAGCTCTCTTCTTTCATTATCTTCACGTGGTCGGTTGATGGAAAGATTAGCAAGGGTGTTCAATAATAACTTATGGCAATGGCTTTCTGTTCCACTACAAGAGCAATTGGGCATAAGCAAAAATTCATGGAACTAA

Protein sequence

MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSWN*
Homology
[Close]
BLAST of CsaV3_6G041750 vs. NCBI nr
Match: KGN48366.1 (hypothetical protein Csa_003278 [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.2e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60
          MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP
Sbjct: 1  MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60

Query: 61 LQEQLGISKNSWN 74
          LQEQLGISKNSWN
Sbjct: 61 LQEQLGISKNSWN 73

[Close]
BLAST of CsaV3_6G041750 vs. NCBI nr
Match: KAG7035121.1 (hypothetical protein SDJN02_01916, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 76.6 bits (187), Expect = 9.8e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 0 

Query: 34 SLSSRGRLMERLARVFNNNLWQWLSVPLQEQLGISKNSW 73
          ++SSRGRLMERLA VFNNNLWQWLSVPLQEQLGIS NSW
Sbjct: 49 AVSSRGRLMERLAMVFNNNLWQWLSVPLQEQLGISTNSW 87

[Close]
BLAST of CsaV3_6G041750 vs. ExPASy TrEMBL
Match: A0A0A0KKT8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0 

Query: 1  MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60
          MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP
Sbjct: 1  MFFPIFILFAPIFSFNHILGLHRSLFSAGSSLLSLSSRGRLMERLARVFNNNLWQWLSVP 60

Query: 61 LQEQLGISKNSWN 74
          LQEQLGISKNSWN
Sbjct: 61 LQEQLGISKNSWN 73

The following BLAST results are available for this feature:
BLAST of CsaV3_6G041750 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48366.12.2e-31100.00hypothetical protein Csa_003278 [Cucumis sativus][more]
KAG7035121.19.8e-1189.74hypothetical protein SDJN02_01916, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CsaV3_6G041750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G041750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKT81.1e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483465 PE=4 SV=1[more]
BLAST of CsaV3_6G041750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G041750.1CsaV3_6G041750.1mRNA