CsaV3_6G041470 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041470
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 24135330 .. 24135922 (-)
RNA-Seq ExpressionCsaV3_6G041470
SyntenyCsaV3_6G041470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGGAGAGAGAGGTAAGTGTGATGGAGTGTATATAAAGAGGAGTGAAGAGTTAAGTAGAGATCATAGAAGTTTGTGAGAGAATTAGACTTATATATATCATATCAAATTAGCTTATAATTTGAAAGATGAGTCGACGGTTTCCCGTTAGTAAACAAATTCTTCCAGTGGATCCATCGGACAGGTCGCTTATTGAGCAATGTGTTCCGCTTGTGATTAATCACTGTCAATCTATACATCAAATTGATGTCAAATTTGAAGGTATTCTACATGGTCAGTGTGAGGTTGGGCCAAATGGCAAAACATATACCCTTAGGTTAAAGCTAAAGGACAAGGTCGGTGATCGTTATGTTCTTAAGATCGGTGTGATTAAATTCTTTTGCCCACTCTTTGGCCCTCCAAGCCTTTTGTCTTTCGAGTGTTCTAAAGAAATCAACGTCTAAAAACCATGATTATGCTATGTATAATGAAAATGGTGCTTTCTCTCTTATATATCTATCAATAAATATGTAAAACCGATCTCTGTTTAAGAATGCAATATTGGATGTTTTAATTTACATTATATTTCGACTTTCTTAATGTCTATCTTCTTCT

mRNA sequence

ATGAGTCGACGGTTTCCCGTTAGTAAACAAATTCTTCCAGTGGATCCATCGGACAGGTCGCTTATTGAGCAATGTGTTCCGCTTGTGATTAATCACTGTCAATCTATACATCAAATTGATGTCAAATTTGAAGGTATTCTACATGGTCAGTGTGAGGTTGGGCCAAATGGCAAAACATATACCCTTAGGTTAAAGCTAAAGGACAAGGTCGGTGATCGTTATGTTCTTAAGATCGGTGTGATTAAATTCTTTTGCCCACTCTTTGGCCCTCCAAGCCTTTTGTCTTTCGAGTGTTCTAAAGAAATCAACGTCTAA

Coding sequence (CDS)

ATGAGTCGACGGTTTCCCGTTAGTAAACAAATTCTTCCAGTGGATCCATCGGACAGGTCGCTTATTGAGCAATGTGTTCCGCTTGTGATTAATCACTGTCAATCTATACATCAAATTGATGTCAAATTTGAAGGTATTCTACATGGTCAGTGTGAGGTTGGGCCAAATGGCAAAACATATACCCTTAGGTTAAAGCTAAAGGACAAGGTCGGTGATCGTTATGTTCTTAAGATCGGTGTGATTAAATTCTTTTGCCCACTCTTTGGCCCTCCAAGCCTTTTGTCTTTCGAGTGTTCTAAAGAAATCAACGTCTAA

Protein sequence

MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV*
Homology
BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_004454 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60
           MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY
Sbjct: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60

Query: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV
Sbjct: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KAA0040704.1 (hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK00712.1 hypothetical protein E5676_scaffold75352G00010 [Cucumis melo var. makuwa] >TYK14273.1 hypothetical protein E5676_scaffold4170G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.2e-24
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 14  VDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDR 73
           V+P D  L+E CVPLV+NHC++I  ID +FEGI+ G  EVGPNGKTYTL+LKLK ++GD 
Sbjct: 14  VNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGKTYTLKLKLKVRIGDA 73

Query: 74  YVLKIGVIKFFCPLFG-PPSLLSFECSKEINV 105
           YV+KI V+KFF P  G P +LLSFE  +EIN+
Sbjct: 74  YVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

BLAST of CsaV3_6G041470 vs. NCBI nr
Match: KAE8647454.1 (hypothetical protein Csa_003781 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 5.1e-21
Identity = 49/95 (51.58%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  V+ HCQS+ QID  FEG++ G+ E+G NGKTYTL+LK+K +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKLKIKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI +++ F P  G PS++SFE  +EIN+
Sbjct: 72  IGDAYVVKIVLVRLFFPFVGYPSVVSFEYLEEINI 106

BLAST of CsaV3_6G041470 vs. NCBI nr
Match: XP_031744690.1 (actin-related protein 2-like [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.7e-06
Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 0

Query: 35  SIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLL 94
           ++ +I+V  E +L    EV  NGKT+TL+LKLK K+ D    KI V+K F P  G P++L
Sbjct: 57  TVLKIEVDIEAVLDVVHEVNSNGKTFTLKLKLKVKLLDSVDTKIAVVKIFWPPIGLPTIL 116

Query: 95  SFECSKEIN 104
           SF C  EIN
Sbjct: 117 SFLC-VEIN 124

BLAST of CsaV3_6G041470 vs. ExPASy TrEMBL
Match: A0A0A0KIX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 9.9e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60
           MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY
Sbjct: 1   MSRRFPVSKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTY 60

Query: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV
Sbjct: 61  TLRLKLKDKVGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

BLAST of CsaV3_6G041470 vs. ExPASy TrEMBL
Match: A0A5D3BPM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00020 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 0

Query: 14  VDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKVGDR 73
           V+P D  L+E CVPLV+NHC++I  ID +FEGI+ G  EVGPNGKTYTL+LKLK ++GD 
Sbjct: 14  VNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGKTYTLKLKLKVRIGDA 73

Query: 74  YVLKIGVIKFFCPLFG-PPSLLSFECSKEINV 105
           YV+KI V+KFF P  G P +LLSFE  +EIN+
Sbjct: 74  YVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

BLAST of CsaV3_6G041470 vs. ExPASy TrEMBL
Match: A0A0A0KFK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 50/95 (52.63%), Postives = 71/95 (74.74%), Query Frame = 0

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  V+ HCQS+ QID  FEG++ G+ E+G NGKTYTL+LK+K +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNGKTYTLKLKIKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI ++K F P  G PS++SFE  +EIN+
Sbjct: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

BLAST of CsaV3_6G041470 vs. ExPASy TrEMBL
Match: A0A0A0KKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 50/95 (52.63%), Postives = 68/95 (71.58%), Query Frame = 0

Query: 10  QILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDK 69
           QI+P+D SD +L +  V  VI HCQS+ QID  FEG + G  E+G NGKTY L+LKLK +
Sbjct: 12  QIVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKLKLKVR 71

Query: 70  VGDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 105
           +GD YV+KI ++K F P  G PS++SFE  +EI++
Sbjct: 72  IGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

BLAST of CsaV3_6G041470 vs. ExPASy TrEMBL
Match: A0A0A0KFL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.3e-18
Identity = 46/90 (51.11%), Postives = 63/90 (70.00%), Query Frame = 0

Query: 8  SKQILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLK 67
          S QI+P+D SD +L +  V  V+ HCQ++ QID  +EG + G  E+G NGKTY+ +LKLK
Sbjct: 10 SLQIVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKLKLK 69

Query: 68 DKVGDRYVLKIGVIKFFCPLFGPPSLLSFE 98
           KVGD YV+K  ++K F P  G PS++SFE
Sbjct: 70 IKVGDAYVIKPVLVKIFFPFIGLPSIVSFE 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN48337.12.0e-54100.00hypothetical protein Csa_004454 [Cucumis sativus][more]
KAA0040704.12.2e-2461.96hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK0071... [more]
KAE8647454.15.1e-2151.58hypothetical protein Csa_003781 [Cucumis sativus][more]
XP_031744690.12.7e-0647.83actin-related protein 2-like [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KIX99.9e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1[more]
A0A5D3BPM41.1e-2461.96Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KFK81.4e-2152.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KKQ81.6e-2052.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFL53.3e-1851.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G041470.1CsaV3_6G041470.1mRNA