CsaV3_6G041450 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G041450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DUF4283 domain-containing protein
Location	chr6: 24119660 .. 24120124 (+)
RNA-Seq Expression	CsaV3_6G041450
Synteny	CsaV3_6G041450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTATTTTGGTTCCAGAAGTATCCAACAAAAGTGGCTGGATGCAGAAACAAAAAGGTCCCAACCTTTGACTCAACAAAGAAGAGAAGTTATCTACACTCCACCATACTACTCCTCCGGAACAGACAGCCCTAGACGATCGTATGCGGAGGTGGTATCACAAAAATCTTCGTCTGACTCAGACTCTTTACCATTACATAAAAGAGAATCACATGGCAAGCGAAAAGAAGAGGCAAAAACTGAAAAGAAAGAAGATTTTGACTGGAACAAAGTAGTGGTAATAACAAGACGCTATATTCATGATGATTCGTTTAAGATCATTGATAAACTCAAAAACCAATTGGAATCTGATATCACTTACAAACAGTTCCATGCGGAAAAGGCCATTATTCTTTTCAAAGACACCAGCCAAGCTCAAATTATTCTTTTACCAGATAGGGGACACTTGCAGAGGATTCATTGA

mRNA sequence

ATGTGTTATTTTGGTTCCAGAAGTATCCAACAAAAGTGGCTGGATGCAGAAACAAAAAGGTCCCAACCTTTGACTCAACAAAGAAGAGAAGTTATCTACACTCCACCATACTACTCCTCCGGAACAGACAGCCCTAGACGATCGTATGCGGAGGTGGTATCACAAAAATCTTCGTCTGACTCAGACTCTTTACCATTACATAAAAGAGAATCACATGGCAAGCGAAAAGAAGAGGCAAAAACTGAAAAGAAAGAAGATTTTGACTGGAACAAAGTAGTGGTAATAACAAGACGCTATATTCATGATGATTCGTTTAAGATCATTGATAAACTCAAAAACCAATTGGAATCTGATATCACTTACAAACAGTTCCATGCGGAAAAGGCCATTATTCTTTTCAAAGACACCAGCCAAGCTCAAATTATTCTTTTACCAGATAGGGGACACTTGCAGAGGATTCATTGA

Coding sequence (CDS)

ATGTGTTATTTTGGTTCCAGAAGTATCCAACAAAAGTGGCTGGATGCAGAAACAAAAAGGTCCCAACCTTTGACTCAACAAAGAAGAGAAGTTATCTACACTCCACCATACTACTCCTCCGGAACAGACAGCCCTAGACGATCGTATGCGGAGGTGGTATCACAAAAATCTTCGTCTGACTCAGACTCTTTACCATTACATAAAAGAGAATCACATGGCAAGCGAAAAGAAGAGGCAAAAACTGAAAAGAAAGAAGATTTTGACTGGAACAAAGTAGTGGTAATAACAAGACGCTATATTCATGATGATTCGTTTAAGATCATTGATAAACTCAAAAACCAATTGGAATCTGATATCACTTACAAACAGTTCCATGCGGAAAAGGCCATTATTCTTTTCAAAGACACCAGCCAAGCTCAAATTATTCTTTTACCAGATAGGGGACACTTGCAGAGGATTCATTGA

Protein sequence

MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDITYKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH*

Homology

[Close]

BLAST of CsaV3_6G041450 vs. NCBI nr
Match: KGN48335.1 (hypothetical protein Csa_004423 [Cucumis sativus])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD 60
           MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD
Sbjct: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD 60

Query: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT 120
           SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT
Sbjct: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT 120

Query: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 155
           YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH
Sbjct: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 154

[Close]

BLAST of CsaV3_6G041450 vs. NCBI nr
Match: KAA0047273.1 (mitotic spindle checkpoint protein mad1 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-17
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 44  SPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDD 103
           SPRR+YA++VSQ SSSD+DS    K E    R  + K EK+  FDWNK+VV+TRRY H+D
Sbjct: 119 SPRRTYADMVSQGSSSDTDSPKFLKAEKRSTRIIDPKCEKEATFDWNKIVVLTRRYFHND 178

Query: 104 SFKIIDKLKNQLESDITYKQFHAEKAIILFKDTSQAQII 143
             KII KLK QL+++++Y+ FHA+KA+I  KD S  +++
Sbjct: 179 WRKIIVKLKEQLDTNLSYQPFHADKALIFIKDKSLVRLL 217

[Close]

BLAST of CsaV3_6G041450 vs. NCBI nr
Match: TYK18307.1 (hypothetical protein E5676_scaffold456G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-13
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 3   YFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDS-PRRSYAEVVSQKSSSDS 62
           +F      +K    + K +  +  +R+++I     +SS TDS  +RSYA VV + SSSD 
Sbjct: 71  HFADLLNDKKEASTKVKLTTRMVDKRKKII----CFSSDTDSDSQRSYAIVVIRGSSSDE 130

Query: 63  DSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDITY 122
           +   +    +  ++K++ +   +  FDWNK +V+  RY HDD  +II+KLK QL+  I Y
Sbjct: 131 EIHHISTNANTREKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDQPINY 190

Query: 123 KQFHAEKAIILFKDTSQAQII 143
           K FHA KA+I F+D  QA++I
Sbjct: 191 KPFHAYKALIFFEDKEQAKLI 207

[Close]

BLAST of CsaV3_6G041450 vs. NCBI nr
Match: KAA0047970.1 (hypothetical protein E6C27_scaffold385G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-13
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 3   YFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDS-PRRSYAEVVSQKSSSDS 62
           +F      +K    + K +  +  +R+++I     +SS TDS  +RSYA VV + SSSD 
Sbjct: 71  HFADLLNDKKEASTKVKLTTRMVDKRKKII----CFSSDTDSDSQRSYAIVVIRGSSSDE 130

Query: 63  DSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDITY 122
           +   +    +  ++K++ +   +  FDWNK +V+  RY HDD  +II+KLK QL+  I Y
Sbjct: 131 EIHHISTNANTREKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDLPINY 190

Query: 123 KQFHAEKAIILFKDTSQAQII 143
           K FHA KA+I F+D  QA++I
Sbjct: 191 KPFHAYKALIFFEDKEQAKLI 207

[Close]

BLAST of CsaV3_6G041450 vs. NCBI nr
Match: KGN51135.1 (hypothetical protein Csa_009125 [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 9.8e-13
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 38  YSSGT--DSPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVI 97
           YSS T  D+PR +Y EV+++ S S+SDS   +  ++  K+KE+    K E FDW+K  VI
Sbjct: 117 YSSSTDFDNPRHTYVEVLTKGSLSNSDSPNSYNADTKEKKKEDTTARKFETFDWSKTEVI 176

Query: 98  TRRYIHDDSFKIIDKLKNQLES-DITYKQFHAEKAIILFKDTSQAQII 143
           T+R  HDD  KI++KL+ QL+  +ITYK FHAEKA++  ++ +   ++
Sbjct: 177 TKRCFHDDWKKIMEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLL 224

[Close]

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL
Match: A0A0A0KF42 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G482730 PE=4 SV=1)

HSP 1 Score: 306.6 bits (784), Expect = 5.9e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD 60
           MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD
Sbjct: 1   MCYFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDSPRRSYAEVVSQKSSSD 60

Query: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT 120
           SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT
Sbjct: 61  SDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDIT 120

Query: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 155
           YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH
Sbjct: 121 YKQFHAEKAIILFKDTSQAQIILLPDRGHLQRIH 154

[Close]

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL
Match: A0A5A7TUN4 (Mitotic spindle checkpoint protein mad1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00660 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 4.9e-18
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 44  SPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDD 103
           SPRR+YA++VSQ SSSD+DS    K E    R  + K EK+  FDWNK+VV+TRRY H+D
Sbjct: 119 SPRRTYADMVSQGSSSDTDSPKFLKAEKRSTRIIDPKCEKEATFDWNKIVVLTRRYFHND 178

Query: 104 SFKIIDKLKNQLESDITYKQFHAEKAIILFKDTSQAQII 143
             KII KLK QL+++++Y+ FHA+KA+I  KD S  +++
Sbjct: 179 WRKIIVKLKEQLDTNLSYQPFHADKALIFIKDKSLVRLL 217

[Close]

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL
Match: A0A5D3D436 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00160 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-14
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 3   YFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDS-PRRSYAEVVSQKSSSDS 62
           +F      +K    + K +  +  +R+++I     +SS TDS  +RSYA VV + SSSD 
Sbjct: 71  HFADLLNDKKEASTKVKLTTRMVDKRKKII----CFSSDTDSDSQRSYAIVVIRGSSSDE 130

Query: 63  DSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDITY 122
           +   +    +  ++K++ +   +  FDWNK +V+  RY HDD  +II+KLK QL+  I Y
Sbjct: 131 EIHHISTNANTREKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDQPINY 190

Query: 123 KQFHAEKAIILFKDTSQAQII 143
           K FHA KA+I F+D  QA++I
Sbjct: 191 KPFHAYKALIFFEDKEQAKLI 207

[Close]

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL
Match: A0A5A7TXP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00300 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.3e-13
Identity = 53/141 (37.59%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 3   YFGSRSIQQKWLDAETKRSQPLTQQRREVIYTPPYYSSGTDS-PRRSYAEVVSQKSSSDS 62
           +F      +K    + K +  +  +R+++I     +SS TDS  +RSYA VV + SSSD 
Sbjct: 71  HFADLLNDKKEASTKVKLTTRMVDKRKKII----CFSSDTDSDSQRSYAIVVIRGSSSDE 130

Query: 63  DSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVITRRYIHDDSFKIIDKLKNQLESDITY 122
           +   +    +  ++K++ +   +  FDWNK +V+  RY HDD  +II+KLK QL+  I Y
Sbjct: 131 EIHHISTNANTREKKKKGEQTDETAFDWNKTIVLITRYFHDDLKRIIEKLKEQLDLPINY 190

Query: 123 KQFHAEKAIILFKDTSQAQII 143
           K FHA KA+I F+D  QA++I
Sbjct: 191 KPFHAYKALIFFEDKEQAKLI 207

[Close]

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL
Match: A0A0A0KNC5 (DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G465580 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.8e-13
Identity = 47/108 (43.52%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 38  YSSGT--DSPRRSYAEVVSQKSSSDSDSLPLHKRESHGKRKEEAKTEKKEDFDWNKVVVI 97
           YSS T  D+PR +Y EV+++ S S+SDS   +  ++  K+KE+    K E FDW+K  VI
Sbjct: 117 YSSSTDFDNPRHTYVEVLTKGSLSNSDSPNSYNADTKEKKKEDTTARKFETFDWSKTEVI 176

Query: 98  TRRYIHDDSFKIIDKLKNQLES-DITYKQFHAEKAIILFKDTSQAQII 143
           T+R  HDD  KI++KL+ QL+  +ITYK FHAEKA++  ++ +   ++
Sbjct: 177 TKRCFHDDWKKIMEKLQEQLDHLNITYKLFHAEKAMVFLEEKNMVNLL 224

The following BLAST results are available for this feature:

BLAST of CsaV3_6G041450 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48335.1	1.2e-79	100.00	hypothetical protein Csa_004423 [Cucumis sativus]	[more]
KAA0047273.1	1.0e-17	52.53	mitotic spindle checkpoint protein mad1 [Cucumis melo var. makuwa]	[more]
TYK18307.1	1.5e-13	37.59	hypothetical protein E5676_scaffold456G00160 [Cucumis melo var. makuwa]	[more]
KAA0047970.1	2.6e-13	37.59	hypothetical protein E6C27_scaffold385G00300 [Cucumis melo var. makuwa]	[more]
KGN51135.1	9.8e-13	43.52	hypothetical protein Csa_009125 [Cucumis sativus]	[more]

BLAST of CsaV3_6G041450 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF42	5.9e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G482730 PE=4 SV=1	[more]
A0A5A7TUN4	4.9e-18	52.53	Mitotic spindle checkpoint protein mad1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3D436	7.3e-14	37.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TXP6	1.3e-13	37.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KNC5	4.8e-13	43.52	DUF4283 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G465580 PE=...	[more]

BLAST of CsaV3_6G041450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G041450.1	CsaV3_6G041450.1	mRNA