CsaV3_6G041350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G041350
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptioncysteine proteinase inhibitor A-like
Locationchr6: 24020428 .. 24020802 (-)
RNA-Seq ExpressionCsaV3_6G041350
SyntenyCsaV3_6G041350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTCGTAATTAAGGGATCACCCATTCCAAACATCGATCAGCGAAAGGACGTGCAACAAATTGGAGGGATTGCAGTGGACATACACAACGAAGAAAAATCAGACACTTTGATTTTCCATCGTGTGATAAACGGCCTGGAGCTTGTGATTAATGATATAAATGGTAGCATATTGTCGTATACTCTTGTGGTGGAAGCTATAAATAAGGATAAAAATATCTGGACATATGTGACTTCCATTAAAATTACAAAACCATCAAGCTATGAACTCGTATATTTTAGAGATCCCCTCGGGTACTACCCGAATAGTATGAAAACAATCCTTCTATATGTGTGTGTGTGTGAGAGGCATTATTGTCTTTTGCCTATATGA

mRNA sequence

ATGAGTTTCGTAATTAAGGGATCACCCATTCCAAACATCGATCAGCGAAAGGACGTGCAACAAATTGGAGGGATTGCAGTGGACATACACAACGAAGAAAAATCAGACACTTTGATTTTCCATCGTGTGATAAACGGCCTGGAGCTTGTGATTAATGATATAAATGGTAGCATATTGTCGTATACTCTTGTGGTGGAAGCTATAAATAAGGATAAAAATATCTGGACATATGTGACTTCCATTAAAATTACAAAACCATCAAGCTATGAACTCGTATATTTTAGAGATCCCCTCGGGTACTACCCGAATAGTATGAAAACAATCCTTCTATATGTGTGTGTGTGTGAGAGGCATTATTGTCTTTTGCCTATATGA

Coding sequence (CDS)

ATGAGTTTCGTAATTAAGGGATCACCCATTCCAAACATCGATCAGCGAAAGGACGTGCAACAAATTGGAGGGATTGCAGTGGACATACACAACGAAGAAAAATCAGACACTTTGATTTTCCATCGTGTGATAAACGGCCTGGAGCTTGTGATTAATGATATAAATGGTAGCATATTGTCGTATACTCTTGTGGTGGAAGCTATAAATAAGGATAAAAATATCTGGACATATGTGACTTCCATTAAAATTACAAAACCATCAAGCTATGAACTCGTATATTTTAGAGATCCCCTCGGGTACTACCCGAATAGTATGAAAACAATCCTTCTATATGTGTGTGTGTGTGAGAGGCATTATTGTCTTTTGCCTATATGA

Protein sequence

MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILSYTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYPNSMKTILLYVCVCERHYCLLPI*
Homology
BLAST of CsaV3_6G041350 vs. NCBI nr
Match: KAE8647444.1 (hypothetical protein Csa_003412 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 9.8e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0

Query: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS 60
           MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS
Sbjct: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS 60

Query: 61  YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYPNSMKTILLYVCVCERHYC 120
           YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYPNSMKTILLYVCVCERHYC
Sbjct: 61  YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYPNSMKTILLYVCVCERHYC 120

Query: 121 LLPI 125
           LLPI
Sbjct: 121 LLPI 124

BLAST of CsaV3_6G041350 vs. NCBI nr
Match: KAE8645934.1 (hypothetical protein Csa_021370 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 1.8e-49
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0

Query: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS 60
           MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS
Sbjct: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS 60

Query: 61  YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYP 103
           YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYP
Sbjct: 61  YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYP 102

BLAST of CsaV3_6G041350 vs. NCBI nr
Match: KAE8645932.1 (hypothetical protein Csa_021380 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 2.1e-37
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0

Query: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDING-SIL 60
           MSF  KG PIPNIDQRKDVQQIG IAVDIHNE+K DTLIFHRVINGLE+ I+DI+G  IL
Sbjct: 1   MSFKNKGPPIPNIDQRKDVQQIGRIAVDIHNEQKPDTLIFHRVINGLEIGISDIHGPRIL 60

Query: 61  SYTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYY 102
            YTLVVEAINKDK IWTYVTSIKITKPSSYELV F+DPLGYY
Sbjct: 61  LYTLVVEAINKDKIIWTYVTSIKITKPSSYELVSFKDPLGYY 102

BLAST of CsaV3_6G041350 vs. NCBI nr
Match: KAE8645933.1 (hypothetical protein Csa_021387 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31
Identity = 78/102 (76.47%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS 60
           MS VIKGSPIPNIDQRKDVQQIG IAVDIHNE+KSDTLIFHRVINGLE  ++    +  S
Sbjct: 1   MSLVIKGSPIPNIDQRKDVQQIGRIAVDIHNEDKSDTLIFHRVINGLENAVD----TCKS 60

Query: 61  YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYYP 103
           Y LVVE I KDK IWTY T I I + SSYELVYFRDPLGYYP
Sbjct: 61  YALVVEVI-KDKIIWTYATLITIPQTSSYELVYFRDPLGYYP 97

BLAST of CsaV3_6G041350 vs. NCBI nr
Match: KAE8645931.1 (hypothetical protein Csa_021386 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.5e-19
Identity = 60/101 (59.41%), Postives = 69/101 (68.32%), Query Frame = 0

Query: 1   MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILS 60
           MS   KGSPI  IDQR+DVQQIG  A  IHN+EK DTL F RV  GLE    D+N +  S
Sbjct: 1   MSSENKGSPIFVIDQREDVQQIGQNATHIHNQEKPDTLGFLRVTYGLE----DVNATCKS 60

Query: 61  YTLVVEAINKDKNIWTYVTSIKITKPSSYELVYFRDPLGYY 102
           YTL VEA+NKDK IWTY+ SIK+T+P       F+DP GYY
Sbjct: 61  YTLGVEALNKDKIIWTYMASIKMTEPHDKYEQSFKDPFGYY 97

BLAST of CsaV3_6G041350 vs. ExPASy TrEMBL
Match: A0A0A0LVH4 (Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.9e-06
Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 6   KGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILSYTLVV 65
           +  PI +++   +V+   G AV IHN++K DTL+F RV+NGL+  ++    +   Y+L++
Sbjct: 3   RAEPIKDVND-SEVKFAAGQAVKIHNDQKHDTLVFIRVVNGLKQEVD----TAKLYSLLI 62

Query: 66  EAINKDKNIWTYVTSIKI--TKPSSY-------ELVYFRDPLGYY 102
           EA N D   W Y+  IK+    PS Y       EL+ + DPL ++
Sbjct: 63  EATNGDGTHWGYIAKIKLWPKAPSHYDPYSHTFELISWEDPLKFW 102

BLAST of CsaV3_6G041350 vs. ExPASy TrEMBL
Match: A0A5A7SX36 (Cystatin Hv-CPI6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold836G00250 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.8e-05
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 0

Query: 9   PIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSILSYTLVVEAI 68
           PI +++   +V+   G AV IHN++K D L+F RV+NG++  ++   G    Y+L++EA 
Sbjct: 6   PIKDVND-SEVKFAAGEAVKIHNDKKDDDLVFIRVVNGVKQQVD--YGK--QYSLLIEAR 65

Query: 69  NKDKNIWTYVTSIKITK---------PSSYELVYFRDPLGYY 102
           N D   W Y   IK+ +         P SY L+ + DPL +Y
Sbjct: 66  NGDGTHWGYCAKIKLLRKPVSHHDPYPHSYVLISWEDPLKFY 102

BLAST of CsaV3_6G041350 vs. ExPASy TrEMBL
Match: A0A5A7TJK0 (Cysteine proteinase inhibitor A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G001140 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 1  MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSI-- 60
          MS +    PI +I+   +VQ +G + VD HN++  + L F RV+NGL    +D    +  
Sbjct: 1  MSIMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGG 60

Query: 61 LSYTLVVEAINKDKNIWTYVTSIKITK 86
          + Y LV+EAI   K  WTY   +  +K
Sbjct: 61 VLYELVLEAITTSKINWTYKARVSKSK 87

BLAST of CsaV3_6G041350 vs. ExPASy TrEMBL
Match: A0A1S3B5B9 (cysteine proteinase inhibitor A-like OS=Cucumis melo OX=3656 GN=LOC103486185 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.5e-04
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 0

Query: 1  MSFVIKGSPIPNIDQRKDVQQIGGIAVDIHNEEKSDTLIFHRVINGLELVINDINGSI-- 60
          MS +    PI +I+   +VQ +G + VD HN++  + L F RV+NGL    +D    +  
Sbjct: 1  MSIMSAFKPIEDINDNLEVQDLGNLTVDDHNKKTGENLKFVRVVNGLAASFSDPISPLGG 60

Query: 61 LSYTLVVEAINKDKNIWTYVTSIKITK 86
          + Y LV+EAI   K  WTY   +  +K
Sbjct: 61 VLYELVLEAITTSKINWTYKARVSKSK 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647444.19.8e-64100.00hypothetical protein Csa_003412 [Cucumis sativus][more]
KAE8645934.11.8e-49100.00hypothetical protein Csa_021370 [Cucumis sativus][more]
KAE8645932.12.1e-3784.31hypothetical protein Csa_021380 [Cucumis sativus][more]
KAE8645933.11.7e-3176.47hypothetical protein Csa_021387 [Cucumis sativus][more]
KAE8645931.11.5e-1959.41hypothetical protein Csa_021386 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LVH45.9e-0635.24Cystatin Hv-CPI6 OS=Cucumis sativus OX=3659 GN=Csa_1G123470 PE=4 SV=1[more]
A0A5A7SX363.8e-0535.29Cystatin Hv-CPI6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold836G002... [more]
A0A5A7TJK05.5e-0435.63Cysteine proteinase inhibitor A-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3B5B95.5e-0435.63cysteine proteinase inhibitor A-like OS=Cucumis melo OX=3656 GN=LOC103486185 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.10coord: 6..98
e-value: 8.3E-9
score: 37.3
NoneNo IPR availableSUPERFAMILY54403Cystatin/monellincoord: 11..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G041350.1CsaV3_6G041350.1mRNA