CsaV3_6G040590 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP* Homology
BLAST of CsaV3_6G040590 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus]) HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21 Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. NCBI nr
Match: XP_010271716.1 (PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera]) HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19 Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. NCBI nr
Match: XP_019179717.1 (PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil]) HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18 Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. NCBI nr
Match: ONH96215.1 (hypothetical protein PRUPE_7G113800 [Prunus persica]) HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18 Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A1U8AYB4 (uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716 PE=4 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19 Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A803MQG7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 3.0e-19 Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: M5WDM2 (LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G113800 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19 Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A5E4F1E4 (PREDICTED: GDSL OS=Prunus dulcis OX=3755 GN=ALMOND_2B006292 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 8.7e-19 Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A6J5Y0Z0 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS44437 PE=4 SV=1) HSP 1 Score: 102.8 bits (255), Expect = 8.7e-19 Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19 Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 87.0 bits (214), Expect = 9.5e-18 Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0
BLAST of CsaV3_6G040590 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein ) HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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