CsaV3_6G040590 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G040590
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionLysM domain-containing protein
Locationchr6: 23506154 .. 23506465 (-)
RNA-Seq ExpressionCsaV3_6G040590
SyntenyCsaV3_6G040590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG

mRNA sequence

ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG

Coding sequence (CDS)

ATGGGGAAGAGATCATCATCGTCGTCATCATCATCGTTGTCAAAGGCAAAGGTGGTTAGTTTGGTAATTTTGGTATTGAGTTGCTTAATATGGTGTTGCAAAAGCAGTGAATTATTACATTACAATTGTGAAGAGATATATGTTGTTCATGAAGGAGAAACTTTGCAAAGCATCAGTGAAAAATGTGGAGATCCATTCATTGTTGAAGAAAATCCTCATATTAATGATCCAGATGATGTTTTTCCTGGTTTGGTTATCAAGATCACTCCTTTTCACCATTTTTTCAAATATCCCACCTTTCTTACACCTTAG

Protein sequence

MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP*
Homology
BLAST of CsaV3_6G040590 vs. NCBI nr
Match: KAE8647420.1 (hypothetical protein Csa_003059 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE 60
           MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE
Sbjct: 1   MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE 60

Query: 61  KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP 104
           KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP
Sbjct: 61  KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFFKYPTFLTP 103

BLAST of CsaV3_6G040590 vs. NCBI nr
Match: KAG6595189.1 (hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027207.1 hypothetical protein SDJN02_11218, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 0

Query: 1  MGKRSSSSSSSSLSKAKVVSLVILVLSCLIWCCKSSELLHYNCEEIYVVHEGETLQSISE 60
          M KRSS       S+ + + LV+++    +WCC S E+L   C+EIYVV EGETLQSISE
Sbjct: 1  MAKRSS-------SRREFLVLVLVLSWWCVWCCNSQEVL-MGCDEIYVVREGETLQSISE 60

Query: 61 KCGDPFIVEENPHINDPDDVFPGLVIKITPFHHFF 96
          KCGDPFI E NPHIND DDVFPGLVIKITPF H F
Sbjct: 61 KCGDPFIFEHNPHINDVDDVFPGLVIKITPFLHRF 87

BLAST of CsaV3_6G040590 vs. NCBI nr
Match: XP_010271716.1 (PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera])

HSP 1 Score: 105.1 bits (261), Expect = 3.6e-19
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 6   SSSSSSSLSKAKVVS---LVILVLSCLIWCCKSSE----------LLHYNCEEIYVVHEG 65
           SSSS+ + S A+ +S    ++LV+  L+ CC SSE          ++   C+EIYVV EG
Sbjct: 5   SSSSTITASVAERISWYCSLVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEG 64

Query: 66  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 92
           ETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF
Sbjct: 65  ETLHTISEKCGDPFIVEENPHIHDPDDVFPGLVIKITPF 103

BLAST of CsaV3_6G040590 vs. NCBI nr
Match: XP_019179717.1 (PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil])

HSP 1 Score: 103.6 bits (257), Expect = 1.0e-18
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 0

Query: 43 CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 92
          CEEIYVV EGETLQ+ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF
Sbjct: 51 CEEIYVVREGETLQTISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 99

BLAST of CsaV3_6G040590 vs. NCBI nr
Match: ONH96215.1 (hypothetical protein PRUPE_7G113800 [Prunus persica])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSEL-----------LHYNCEEIYVVHEGETLQSISEKCGDPFIVEE 81
           V+LVLSC       +E            L+  C+EIYVVHEGETLQ+ISEKCGDP+IVEE
Sbjct: 25  VMLVLSCFESLSSENEYRVRTIQLQVDRLNMPCDEIYVVHEGETLQTISEKCGDPYIVEE 84

Query: 82  NPHINDPDDVFPGLVIKITPF 92
           NPHI+DPDDVFPGLVIKITPF
Sbjct: 85  NPHIHDPDDVFPGLVIKITPF 105

BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A1U8AYB4 (uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-19
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 0

Query: 6   SSSSSSSLSKAKVVS---LVILVLSCLIWCCKSSE----------LLHYNCEEIYVVHEG 65
           SSSS+ + S A+ +S    ++LV+  L+ CC SSE          ++   C+EIYVV EG
Sbjct: 5   SSSSTITASVAERISWYCSLVLVVLLLLGCCDSSESESLVRMNLRMISKPCDEIYVVEEG 64

Query: 66  ETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITPF 92
           ETL +ISEKCGDPFIVEENPHI+DPDDVFPGLVIKITPF
Sbjct: 65  ETLHTISEKCGDPFIVEENPHIHDPDDVFPGLVIKITPF 103

BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A803MQG7 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.0e-19
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 0

Query: 31 WCCKSSELLHYNCEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 90
          W   S +++   C+E+YVV EGETL SISEKCGDP+IVEENPHINDPDDVFPGLVIKITP
Sbjct: 36 WRYVSKDMISMPCDEVYVVREGETLHSISEKCGDPYIVEENPHINDPDDVFPGLVIKITP 95

Query: 91 FHH 94
          F +
Sbjct: 96 FRN 98

BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: M5WDM2 (LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G113800 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.6e-19
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSEL-----------LHYNCEEIYVVHEGETLQSISEKCGDPFIVEE 81
           V+LVLSC       +E            L+  C+EIYVVHEGETLQ+ISEKCGDP+IVEE
Sbjct: 25  VMLVLSCFESLSSENEYRVRTIQLQVDRLNMPCDEIYVVHEGETLQTISEKCGDPYIVEE 84

Query: 82  NPHINDPDDVFPGLVIKITPF 92
           NPHI+DPDDVFPGLVIKITPF
Sbjct: 85  NPHIHDPDDVFPGLVIKITPF 105

BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A5E4F1E4 (PREDICTED: GDSL OS=Prunus dulcis OX=3755 GN=ALMOND_2B006292 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.7e-19
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSEL-----------LHYNCEEIYVVHEGETLQSISEKCGDPFIVEE 81
           V+LVLSC       +E            L+  C+EIYVVHEGETLQ+ISEKCGDP+IVEE
Sbjct: 25  VMLVLSCCESLSSENEYRLRTIQLQVDRLNMPCDEIYVVHEGETLQTISEKCGDPYIVEE 84

Query: 82  NPHINDPDDVFPGLVIKITPF 92
           NPHI+DPDDVFPGLVIKITPF
Sbjct: 85  NPHIHDPDDVFPGLVIKITPF 105

BLAST of CsaV3_6G040590 vs. ExPASy TrEMBL
Match: A0A6J5Y0Z0 (LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS44437 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.7e-19
Identity = 53/81 (65.43%), Postives = 60/81 (74.07%), Query Frame = 0

Query: 22  VILVLSCLIWCCKSSEL-----------LHYNCEEIYVVHEGETLQSISEKCGDPFIVEE 81
           V+LVLSC       +E            L+  C+EIYVVHEGETLQ+ISEKCGDP+IVEE
Sbjct: 25  VMLVLSCCESLSSENEYRVRTIQLQVDRLNMPCDEIYVVHEGETLQTISEKCGDPYIVEE 84

Query: 82  NPHINDPDDVFPGLVIKITPF 92
           NPHI+DPDDVFPGLVIKITPF
Sbjct: 85  NPHIHDPDDVFPGLVIKITPF 105

BLAST of CsaV3_6G040590 vs. TAIR 10
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 51/95 (53.68%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 2  GKRSSSSSSSSLSKAKVVSLVILVLSC----LIWCCKSSELLHYNCEEIYVVHEGETLQS 61
          G R+ SS  S+   A V+  +IL+LS          + S+     CEEIY+V EGETL +
Sbjct: 3  GSRTGSSDMSAWCSAVVLLSLILLLSVRENNASNSIRGSQFSTKPCEEIYIVGEGETLHT 62

Query: 62 ISEKCGDPFIVEENPHINDPDDVFPGLVIKITPFH 93
          I +KCGDPFIVE NPHI+DPDDVFPGLV+KI PF+
Sbjct: 63 IGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAPFY 97

BLAST of CsaV3_6G040590 vs. TAIR 10
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 87.0 bits (214), Expect = 9.5e-18
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 0

Query: 4   RSSSSSSSSLSKAKVVSLVILVL-------------------SCLIWCCKSSELLHYNCE 63
           R + S S++++   +V+L+IL L                   +C +W  +  +++   CE
Sbjct: 3   RVTVSRSNTVASYCLVALLILTLAGSVKNSNGGGSGEYYRGRNCEVW--RGKQMMERPCE 62

Query: 64  EIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKI 89
           E+YVV EG+TL SISEKCGDPFIVE NPHI+DPDDVFPGL+IK+
Sbjct: 63  ELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLIKL 104

BLAST of CsaV3_6G040590 vs. TAIR 10
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 0

Query: 43  CEEIYVVHEGETLQSISEKCGDPFIVEENPHINDPDDVFPGLVIKITP 91
           C+EIY V EGETLQ+ISEKCGDP+IVE NPHI+D DD+FPGL+I+ITP
Sbjct: 60  CDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647420.11.0e-50100.00hypothetical protein Csa_003059 [Cucumis sativus][more]
KAG6595189.12.3e-2163.16hypothetical protein SDJN03_11742, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_010271716.13.6e-1959.60PREDICTED: uncharacterized protein LOC104607716 [Nelumbo nucifera][more]
XP_019179717.11.0e-1895.92PREDICTED: uncharacterized protein LOC109174930 [Ipomoea nil][more]
ONH96215.11.4e-1865.43hypothetical protein PRUPE_7G113800 [Prunus persica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1U8AYB41.7e-1959.60uncharacterized protein LOC104607716 OS=Nelumbo nucifera OX=4432 GN=LOC104607716... [more]
A0A803MQG73.0e-1973.02Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
M5WDM26.6e-1965.43LysM domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G113800 PE=4 ... [more]
A0A5E4F1E48.7e-1965.43PREDICTED: GDSL OS=Prunus dulcis OX=3755 GN=ALMOND_2B006292 PE=4 SV=1[more]
A0A6J5Y0Z08.7e-1965.43LysM domain-containing protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS44... [more]
Match NameE-valueIdentityDescription
AT5G62150.12.3e-1953.68peptidoglycan-binding LysM domain-containing protein [more]
AT4G25433.19.5e-1846.15peptidoglycan-binding LysM domain-containing protein [more]
AT3G52790.14.7e-1777.08peptidoglycan-binding LysM domain-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036779LysM domain superfamilyGENE3D3.10.350.10LysM domaincoord: 38..93
e-value: 9.9E-9
score: 36.6
IPR018392LysM domainPFAMPF01476LysMcoord: 47..89
e-value: 3.1E-5
score: 23.9
IPR018392LysM domainCDDcd00118LysMcoord: 46..88
e-value: 1.64475E-6
score: 39.7761
NoneNo IPR availablePANTHERPTHR33648:SF15EMBRYO SAC 1coord: 14..92
NoneNo IPR availablePANTHERPTHR33648EMBRYO SAC 1coord: 14..92
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..28
score: 6.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G040590.1CsaV3_6G040590.1mRNA