CsaV3_6G040530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G040530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	60S acidic ribosomal protein P2-like
Location	chr6: 23467605 .. 23468778 (-)
RNA-Seq Expression	CsaV3_6G040530
Synteny	CsaV3_6G040530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTACTTTCCTTTTCAACTACTCGATTTCTTTTCTTCCCCTCTGCTCCTTGAAGATCCAAAATCCTCTGTCTTCCATCCGTATGTTCTTCTTCAACTTCCTCCCTTTCTCTCTTCTTCGTCTTTGATTCCAACTCTTTCTTTTCCTTTTAAATATTTGCAGACATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGGTAATTTCCACTTCCCTTCCAACTCTTTAATTTCGACATTCTTCTTTTTTTCTTTTTTTTTTCCCGTTTCATTGCTCTGTAAATTAATTAATCGTGTTAATCAAACAACAGAGTAAGAGTATTTAGGTTTAGGTTTTGTTCTGGTGCATTGCTTTTTGTGGAATTCTTGAATTGAAATTGAATTAATTACAGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGTAATTAACTTTATTTTCTTCTTTATTATTTACTCAACTAATTCATTCATATCTACTTCAATATTATGGCTAAATTATAGGTAGCACTACAAATTGCAAATATAACAATTATACGATCTACTAAACTATCTTTTATCAACTGGGGAAGTAAAATTGTCTAAGCTTAAATACAATATCTTCATATGGTTATTTTTTATTCTATTCATATAATTAGGGTTAGGGTTTTAAACTTGTATCATTCATCTAACCAAAGTTGTTTTTGTTTCTTTGTGTTTGCTTGATGCAGGATATGTGCTTCAGTCTTTTTGATTGACGAGATTTATTTGTGTCCTTCACCTTTCAAAGTTTGATCAACTTTAGTTTAGATTCATTTTAAATTGATATATATACCCTGCAACTTTGGGTTCTTATTTAGGTGAAATTTTTGTCATGAACCAAAATTTATTTTGCCTTGAGAATTTATAATCTTTCTTGCATCCACGTTTTATGATCTAACTC

mRNA sequence

ATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGATATGTGCTTCAGTCTTTTTGATTGA

Coding sequence (CDS)

ATGAAGATCGTTGCGGCTTATTTGTTGGCTATTTTGGGCGGAAACACTCACCCTTCCATTCACGACATTAAAGCCATTCTCGCCTCTGTTGGAGTTGAGGCCGAAGATGAAAGAATCGAGTTGCTTCTTTCACAAGTTAAGGGTAAAGATGTTGCAGAGCTTGTAGCTTGTGGGAGGGAGAAGATGGCATGTGTTCCATGTGGTGGTTCTGCCATTCCTGTAGCTGCCGGCAGTGATAGTGGCGGTGGTGCTGCCGCCGCTGTTGTTGCGGCCGAGCCTGTCAAAGAGGACAAGAAAGAAGTTGTTGAAGAATCTGATGAAGATATGTGCTTCAGTCTTTTTGATTGA

Protein sequence

MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGREKMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD*

Homology

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BLAST of CsaV3_6G040530 vs. NCBI nr
Match: XP_004143310.2 (60S acidic ribosomal protein P2 [Cucumis sativus] >KGN48246.1 hypothetical protein Csa_003607 [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 1.2e-52
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 115

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BLAST of CsaV3_6G040530 vs. NCBI nr
Match: XP_022925971.1 (60S acidic ribosomal protein P2-like [Cucurbita moschata] >XP_022925973.1 60S acidic ribosomal protein P2-like [Cucurbita moschata] >KAG7034513.1 hypothetical protein SDJN02_04243 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.1 bits (414), Expect = 7.3e-37
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA+LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKGKD+AE++A GRE
Sbjct: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMA +   GSAIPVAAG   GGGAA+A VAAEPV EDKKEV EES+++MCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 112

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BLAST of CsaV3_6G040530 vs. NCBI nr
Match: XP_022977389.1 (60S acidic ribosomal protein P2-like [Cucurbita maxima] >XP_022977390.1 60S acidic ribosomal protein P2-like [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 9.5e-37
Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKGKD+AE++A GRE
Sbjct: 1   MKIVAAYLLADLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMA +   GSAIPVAAG   GGGAA+A VAAEPVKEDKKEV EES+++MCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVKEDKKEVEEESEDEMCFSLFD 112

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BLAST of CsaV3_6G040530 vs. NCBI nr
Match: KAG6604363.1 (hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA+LGGNTHPS+ DI AIL SVG+E +DERIELLLSQVKGKD+AE++A GRE
Sbjct: 24  MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVDDERIELLLSQVKGKDLAEVIASGRE 83

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMA +   GSAIPVAAG   GGGAA+A VAAEPV EDKKEV EES+++MCFSLFD
Sbjct: 84  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 135

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BLAST of CsaV3_6G040530 vs. NCBI nr
Match: XP_023543240.1 (60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.2 bits (409), Expect = 2.8e-36
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA+LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKG+D+AE++A GRE
Sbjct: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGRDLAEVIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMA +   GSAIPVAAG   GGGAA+A VAAEPVKEDKKE  EES+++MCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVKEDKKEDEEESEDEMCFSLFD 112

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BLAST of CsaV3_6G040530 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.6e-29
Identity = 71/115 (61.74%), Postives = 91/115 (79.13%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AA+LLA+LGGNT P+  D+K+ILASVG +A+D++IELLLSQVKGKD+ EL+A GRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           ++A VP GG  + VAA +  GGG A A  A EP KE+K E  EESDE++ FSLFD
Sbjct: 61  RLASVPSGG-GVAVAAAAGGGGGDAPAAAAEEPKKEEKSE--EESDEELGFSLFD 112

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BLAST of CsaV3_6G040530 vs. ExPASy Swiss-Prot
Match: P46252 (60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 4.9e-28
Identity = 70/115 (60.87%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK VAAYLLA+L GN  PS  D+ AIL SVG E ++E++ELLLSQ+ GKD+ EL+A GRE
Sbjct: 1   MKFVAAYLLAVLAGNASPSADDLTAILESVGCEVDNEKMELLLSQLSGKDITELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K A VPCGG  + VAA + + GGAA    AAE  KE+K E  EESD+DM FSLFD
Sbjct: 61  KFASVPCGGGGVAVAAAAPAAGGAAP---AAEAKKEEKVEEKEESDDDMGFSLFD 112

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BLAST of CsaV3_6G040530 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 8.4e-28
Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GG      A + SGGG      AAE  KE+KKE  EESD+DM FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

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BLAST of CsaV3_6G040530 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 122.5 bits (306), Expect = 3.2e-27
Identity = 68/115 (59.13%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAA+LLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GG      A + SGGG      AAE  KE+KKE  EESD+DM FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsaV3_6G040530 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.0e-26
Identity = 64/115 (55.65%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGNT P+  D+K+IL SVG EA++E++E LL+++K KD+ E++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           +++ VP GG AI + A +   GG AA   A E  KE+K E  EESDEDM FSLFD
Sbjct: 61  RLSSVPSGGGAIDMGAPAAVAGGGAAP--AEEAKKEEKVEEKEESDEDMGFSLFD 113

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BLAST of CsaV3_6G040530 vs. ExPASy TrEMBL
Match: A0A0A0KKF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451490 PE=3 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.0e-53
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE
Sbjct: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD
Sbjct: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 115

[Close]

BLAST of CsaV3_6G040530 vs. ExPASy TrEMBL
Match: A0A6J1EDL3 (60S acidic ribosomal protein P2-like OS=Cucurbita moschata OX=3662 GN=LOC111433228 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.5e-37
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA+LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKGKD+AE++A GRE
Sbjct: 1   MKIVAAYLLAVLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMA +   GSAIPVAAG   GGGAA+A VAAEPV EDKKEV EES+++MCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVNEDKKEVEEESEDEMCFSLFD 112

[Close]

BLAST of CsaV3_6G040530 vs. ExPASy TrEMBL
Match: A0A6J1IM66 (60S acidic ribosomal protein P2-like OS=Cucurbita maxima OX=3661 GN=LOC111477740 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.6e-37
Identity = 90/115 (78.26%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA LGGNTHPS+ DI AIL SVG+E EDERIELLLSQVKGKD+AE++A GRE
Sbjct: 1   MKIVAAYLLADLGGNTHPSVEDINAILGSVGIEVEDERIELLLSQVKGKDLAEVIASGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           KMA +   GSAIPVAAG   GGGAA+A VAAEPVKEDKKEV EES+++MCFSLFD
Sbjct: 61  KMASISSVGSAIPVAAG---GGGAASAAVAAEPVKEDKKEVEEESEDEMCFSLFD 112

[Close]

BLAST of CsaV3_6G040530 vs. ExPASy TrEMBL
Match: A0A6J1CQB9 (60S acidic ribosomal protein P2A-like OS=Momordica charantia OX=3673 GN=LOC111013606 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.3e-35
Identity = 89/117 (76.07%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MKIVAAYLLA+LGGN  PS+  IKAIL SVGVE ED+RIELLLSQVKG D+AE+VACGRE
Sbjct: 1   MKIVAAYLLAVLGGNNSPSVDHIKAILGSVGVEVEDDRIELLLSQVKGTDLAEIVACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGA-AAAVVAAEP-VKEDKKEVVEESDEDMCFSLFD 116
           KMA +PC G+AI V A + +GG A A A VAAEP  KEDKKEVVEESDEDMCFSLFD
Sbjct: 61  KMASIPCAGAAIAVGAPTAAGGAAPAVASVAAEPEKKEDKKEVVEESDEDMCFSLFD 117

[Close]

BLAST of CsaV3_6G040530 vs. ExPASy TrEMBL
Match: A0A6P5ZTA1 (60S acidic ribosomal protein P2B-like OS=Durio zibethinus OX=66656 GN=LOC111303787 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.9e-32
Identity = 77/115 (66.96%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK++AAYLLA+LGGNT PS +D+K IL SVG EA+D+RIELLLS+VKGKD+ EL+ACGRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPSANDLKDILGSVGAEADDDRIELLLSEVKGKDITELIACGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GGSA+ VAA + +GGG   A  AAE  KE+K E  EESD+DM FSLFD
Sbjct: 61  KLASVPSGGSAVAVAAPTAAGGGGGGAAPAAEAKKEEKVEEKEESDDDMGFSLFD 115

[Close]

BLAST of CsaV3_6G040530 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-29
Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GG      A + SGGG      AAE  KE+KKE  EESD+DM FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsaV3_6G040530 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-29
Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GG      A + SGGG      AAE  KE+KKE  EESD+DM FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsaV3_6G040530 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 124.4 bits (311), Expect = 6.0e-29
Identity = 69/115 (60.00%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAAYLLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GG      A + SGGG      AAE  KE+KKE  EESD+DM FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGASAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsaV3_6G040530 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 122.5 bits (306), Expect = 2.3e-28
Identity = 68/115 (59.13%), Postives = 81/115 (70.43%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILASVGVEAEDERIELLLSQVKGKDVAELVACGRE 60
           MK+VAA+LLA+L G   P+  DIK IL SVG E ED +IELLL +VKGKD+AEL+A GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 61  KMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDEDMCFSLFD 116
           K+A VP GG      A + SGGG      AAE  KE+KKE  EESD+DM FSLF+
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDDMGFSLFE 115

[Close]

BLAST of CsaV3_6G040530 vs. TAIR 10
Match: AT2G27720.3 (60S acidic ribosomal protein family )

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-25
Identity = 68/127 (53.54%), Postives = 81/127 (63.78%), Query Frame = 0


Query: 1   MKIVAAYLLAILGGNTHPSIHDIKAILAS------------VGVEAEDERIELLLSQVKG 60
           MK+VAA+LLA+L G   P+  DIK IL S            VG E ED +IELLL +VKG
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSGIMVLVLDCVVIVGAETEDSQIELLLKEVKG 60

Query: 61  KDVAELVACGREKMACVPCGGSAIPVAAGSDSGGGAAAAVVAAEPVKEDKKEVVEESDED 116
           KD+AEL+A GREK+A VP GG      A + SGGG      AAE  KE+KKE  EESD+D
Sbjct: 61  KDLAELIAAGREKLASVPSGGGGGVAVASATSGGGGGGGAPAAESKKEEKKEEKEESDDD 120

The following BLAST results are available for this feature:

BLAST of CsaV3_6G040530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143310.2	1.2e-52	100.00	60S acidic ribosomal protein P2 [Cucumis sativus] >KGN48246.1 hypothetical prote...	[more]
XP_022925971.1	7.3e-37	77.39	60S acidic ribosomal protein P2-like [Cucurbita moschata] >XP_022925973.1 60S ac...	[more]
XP_022977389.1	9.5e-37	78.26	60S acidic ribosomal protein P2-like [Cucurbita maxima] >XP_022977390.1 60S acid...	[more]
KAG6604363.1	1.6e-36	76.52	hypothetical protein SDJN03_04972, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023543240.1	2.8e-36	76.52	60S acidic ribosomal protein P2-2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G040530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P41099	2.6e-29	61.74	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
P46252	4.9e-28	60.87	60S acidic ribosomal protein P2A OS=Zea mays OX=4577 GN=RPP2A PE=1 SV=3	[more]
Q9SLF7	8.4e-28	60.00	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P51407	3.2e-27	59.13	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
O24415	6.0e-26	55.65	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]

BLAST of CsaV3_6G040530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF6	6.0e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G451490 PE=3 SV=1	[more]
A0A6J1EDL3	3.5e-37	77.39	60S acidic ribosomal protein P2-like OS=Cucurbita moschata OX=3662 GN=LOC1114332...	[more]
A0A6J1IM66	4.6e-37	78.26	60S acidic ribosomal protein P2-like OS=Cucurbita maxima OX=3661 GN=LOC111477740...	[more]
A0A6J1CQB9	4.3e-35	76.07	60S acidic ribosomal protein P2A-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6P5ZTA1	9.9e-32	66.96	60S acidic ribosomal protein P2B-like OS=Durio zibethinus OX=66656 GN=LOC1113037...	[more]

BLAST of CsaV3_6G040530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27710.1	6.0e-29	60.00	60S acidic ribosomal protein family	[more]
AT2G27710.2	6.0e-29	60.00	60S acidic ribosomal protein family	[more]
AT2G27710.3	6.0e-29	60.00	60S acidic ribosomal protein family	[more]
AT2G27720.1	2.3e-28	59.13	60S acidic ribosomal protein family	[more]
AT2G27720.3	1.1e-25	53.54	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 18..114 e-value: 2.2E-19 score: 69.8
None	No IPR available	PANTHER	PTHR21141:SF94	60S ACIDIC RIBOSOMAL PROTEIN P2-1	coord: 1..115
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 1..58 e-value: 3.0E-24 score: 86.9
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 1..115
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 1..115 e-value: 3.47535E-35 score: 115.053
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 2..115 score: 14.224873

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G040530.1	CsaV3_6G040530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome