CsaV3_6G039280 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G039280
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Cinnamyl alcohol dehydrogenase
Location	chr6: 22568250 .. 22569285 (+)
RNA-Seq Expression	CsaV3_6G039280
Synteny	CsaV3_6G039280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATGCAGGAGCACAAACTTTTCCAAATTCCACATTTGGATGGACTAATGTCAAAGATGTTGTTAATGCACACATTAGAATTCGAGCTTATGAGGTTCCATCAACCAATGGAAGATACTGTCTAGTTGAAAGTGTTATCACTATTCAAGAATTGTCAAGTTATTGCATGATCTCTACCCTTCTCTTCAACTTCCTGACAAGTAAGTCTTACTCGACCATCCCGATCTCCATAAGCATTTTCAAGAAAACGCTACTTTCTCGACAACGATCTTTTAAAATTATATAAGCCCTCCTTCCATGTCAATGTTTCTTGATCTTATTAAATTTGTAAACTTCATTTATTTATAGCTTCCTTCGCCTTGGTTTTGATTCCTATGATAGCATTTATTCTTAAGTTTCTTTACAGAAAGAATCAATCGTACATTATCGGCAGACCCAACAATGTCACAACAGTAGGTTCACAACTAATTTGGTTATTCACAATAGTTAGAGAAGGCATACAGTACTTTCATGGATGCTTTAAAAACTGTATGAATGTTGTCAACCGTTTCTTCTTGCATAAAAAAGCATCAATAATCGCTCAGTTGTTTATAAGTCCATTGTGGGTTGTTTTTATAAACTTAGGAAAACGTTTTGGAAATTATAAACCTTCAATCTACAATTATCTTGCACAAACAATTCCATAGGTAAATTCATGATTATATTTCAACTATAAACTCCATGTATCGATTCTTGATTTCAAGCTAATCAGTATAATATTTTCAACTGCAGGTGTGCCGATGACAAACCGTTTACACCCGTGTATCAGGTGTCAGTCGAGAAAGCAAAGAACTTAGGCATTCAATTCATTCCCCTTGCAGAAAACCTGAAGGAAACTGTTGAGAGCTTGAAGGAAAAGAATTTTATCAACTTCTAAACTCTTAGGTATCTGAGAGCCATGAAATTGTGTGAATTTTCTGATAGAAATGAATAGGTAAAAAAATAAGTGCTTTGTGTGAGGCCTTAGAATGGAAGCTTTACTCAATGACTTC

mRNA sequence

ATGGATTATGCAGGAGCACAAACTTTTCCAAATTCCACATTTGGATGGACTAATGTCAAAGATGTTGTTAATGCACACATTAGAATTCGAGCTTATGAGGTTCCATCAACCAATGGAAGATACTGTCTAGTTGAAAGTGTTATCACTATTCAAGAATTGTCAAGTTATTGCATGATCTCTACCCTTCTCTTCAACTTCCTGACAAGTGTGCCGATGACAAACCGTTTACACCCGTGTATCAGGTGTCAGTCGAGAAAGCAAAGAACTTAG

Coding sequence (CDS)

ATGGATTATGCAGGAGCACAAACTTTTCCAAATTCCACATTTGGATGGACTAATGTCAAAGATGTTGTTAATGCACACATTAGAATTCGAGCTTATGAGGTTCCATCAACCAATGGAAGATACTGTCTAGTTGAAAGTGTTATCACTATTCAAGAATTGTCAAGTTATTGCATGATCTCTACCCTTCTCTTCAACTTCCTGACAAGTGTGCCGATGACAAACCGTTTACACCCGTGTATCAGGTGTCAGTCGAGAAAGCAAAGAACTTAG

Protein sequence

MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMISTLLFNFLTSVPMTNRLHPCIRCQSRKQRT*

Homology

[Close]

BLAST of CsaV3_6G039280 vs. NCBI nr
Match: KAE8647382.1 (hypothetical protein Csa_002944 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 8.2e-44
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS 60
          MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS
Sbjct: 1  MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS 60

Query: 61 TLLFNFLTSVPMTNRLHPCIRCQSRKQRT 90
          TLLFNFLTSVPMTNRLHPCIRCQSRKQRT
Sbjct: 61 TLLFNFLTSVPMTNRLHPCIRCQSRKQRT 89

[Close]

BLAST of CsaV3_6G039280 vs. NCBI nr
Match: XP_031742895.1 (cinnamoyl-CoA reductase 1-like [Cucumis sativus])

HSP 1 Score: 145.2 bits (365), Expect = 2.7e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS 60
          MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS
Sbjct: 1  MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS 60

Query: 61 TLLFNFLTSV 71
          TLLFNFLTSV
Sbjct: 61 TLLFNFLTSV 70

[Close]

BLAST of CsaV3_6G039280 vs. NCBI nr
Match: KAE8647378.1 (hypothetical protein Csa_003578 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.8e-30
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS 60
          MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS
Sbjct: 1  MDYAGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQELSSYCMIS 60

Query: 61 TLLFNFLTS 70
          TLLFNFLT+
Sbjct: 61 TLLFNFLTT 69

[Close]

BLAST of CsaV3_6G039280 vs. NCBI nr
Match: KAE8647383.1 (hypothetical protein Csa_003374 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 393 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 435

[Close]

BLAST of CsaV3_6G039280 vs. NCBI nr
Match: XP_031742972.1 (cinnamoyl-CoA reductase 1 [Cucumis sativus] >XP_031742973.1 cinnamoyl-CoA reductase 1 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 215 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 257

[Close]

BLAST of CsaV3_6G039280 vs. ExPASy Swiss-Prot
Match: A0A0B6VQ48 (Phenylacetaldehyde reductase OS=Rosa hybrid cultivar OX=128735 GN=PAR PE=1 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 7.2e-11
Identity = 29/49 (59.18%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 5   GAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQEL 54
           GA+T+PN++FGW NVKDV NAH  ++A+E+PS +GRYCLVE V    E+
Sbjct: 213 GARTYPNASFGWINVKDVANAH--VQAFEIPSASGRYCLVERVAHFTEV 259

[Close]

BLAST of CsaV3_6G039280 vs. ExPASy TrEMBL
Match: A0A1S3BNJ9 (cinnamoyl-CoA reductase 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491499 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 215 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 257

[Close]

BLAST of CsaV3_6G039280 vs. ExPASy TrEMBL
Match: A0A5D3B8F2 (Cinnamoyl-CoA reductase 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00960 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 215 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 257

[Close]

BLAST of CsaV3_6G039280 vs. ExPASy TrEMBL
Match: A0A5A7TE41 (Cinnamoyl-CoA reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00700 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 543 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 585

[Close]

BLAST of CsaV3_6G039280 vs. ExPASy TrEMBL
Match: A0A0A0KH32 (Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G439410 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 215 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 257

[Close]

BLAST of CsaV3_6G039280 vs. ExPASy TrEMBL
Match: A0A1S4DXS2 (uncharacterized protein LOC103491499 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491499 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.8e-12
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 4   AGAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVI 49
           +GAQTFPNSTFGW NVKDV NAH  I AYEVPS NGRYCLVESVI
Sbjct: 543 SGAQTFPNSTFGWVNVKDVANAH--ILAYEVPSANGRYCLVESVI 585

[Close]

BLAST of CsaV3_6G039280 vs. TAIR 10
Match: AT5G19440.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 2.7e-13
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 5   GAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQEL 54
           GA+TFPN +FGW NVKDV NAH  I+A+EVPS NGRYCLVE V+   E+
Sbjct: 217 GAKTFPNLSFGWVNVKDVANAH--IQAFEVPSANGRYCLVERVVHHSEI 263

[Close]

BLAST of CsaV3_6G039280 vs. TAIR 10
Match: AT1G51410.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-12
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 5   GAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQEL 54
           GAQTFPN+TFGW NVKDV NAH  I+A+E P  +GRYCLVE V    E+
Sbjct: 216 GAQTFPNATFGWVNVKDVANAH--IQAFENPDADGRYCLVERVAHYSEV 262

[Close]

BLAST of CsaV3_6G039280 vs. TAIR 10
Match: AT1G09510.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.8e-04
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 5   GAQTFPNSTFGWTNVKDVVNAHIRIRAYEVPSTNGRYCLVESVITIQEL 54
           G   F N  F   +V+DV  AH  I+A+E PS NGRY +   V+TI ++
Sbjct: 215 GKDNFINKDFRLVDVRDVALAH--IKAFETPSANGRYIIEGPVVTINDI 261

The following BLAST results are available for this feature:

BLAST of CsaV3_6G039280 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647382.1	8.2e-44	100.00	hypothetical protein Csa_002944 [Cucumis sativus]	[more]
XP_031742895.1	2.7e-31	100.00	cinnamoyl-CoA reductase 1-like [Cucumis sativus]	[more]
KAE8647378.1	1.8e-30	98.55	hypothetical protein Csa_003578 [Cucumis sativus]	[more]
KAE8647383.1	1.4e-11	84.44	hypothetical protein Csa_003374 [Cucumis sativus]	[more]
XP_031742972.1	1.4e-11	84.44	cinnamoyl-CoA reductase 1 [Cucumis sativus] >XP_031742973.1 cinnamoyl-CoA reduct...	[more]

BLAST of CsaV3_6G039280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A0B6VQ48	7.2e-11	59.18	Phenylacetaldehyde reductase OS=Rosa hybrid cultivar OX=128735 GN=PAR PE=1 SV=1	[more]

BLAST of CsaV3_6G039280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNJ9	6.8e-12	84.44	cinnamoyl-CoA reductase 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349149...	[more]
A0A5D3B8F2	6.8e-12	84.44	Cinnamoyl-CoA reductase 1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5A7TE41	6.8e-12	84.44	Cinnamoyl-CoA reductase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KH32	6.8e-12	84.44	Epimerase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G439410 P...	[more]
A0A1S4DXS2	6.8e-12	84.44	uncharacterized protein LOC103491499 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CsaV3_6G039280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19440.1	2.7e-13	67.35	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G51410.1	2.3e-12	65.31	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G09510.1	1.8e-04	42.86	NAD(P)-binding Rossmann-fold superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.720		coord: 2..88 e-value: 2.5E-9 score: 38.7
None	No IPR available	PANTHER	PTHR10366:SF662	CINNAMYL ALCOHOL DEHYDROGENASE	coord: 5..59
None	No IPR available	PANTHER	PTHR10366	NAD DEPENDENT EPIMERASE/DEHYDRATASE	coord: 5..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G039280.1	CsaV3_6G039280.1	mRNA