CsaV3_6G039250 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G039250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein arginine methyltransferase NDUFAF7
Location	chr6: 22554225 .. 22556359 (+)
RNA-Seq Expression	CsaV3_6G039250
Synteny	CsaV3_6G039250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTACATAATGTTGAATGCACCTACAAGAGTTTACAAGACTATGACTTATACGTATGTGGTTTTTGCTGCATTTTTTCTCTACCATGAAATGATAAATATCTTCTGCTGCTTGCACCAAGCTGAGATATCTTTCTAGCTTTTAGGCTGAATTACTTTATGCATAGCACATCTACCTTGTGCTGTCAATAAAACCAAGGGGGGGGAAGGAACAACTTCCAACAATTTTCTATTTGTAAAAGCGTGAAAGGGGGTTAGTTTTTAAAGAAGAAATCTTATAAACTTCGTAGCTTTCCCGTAAAAATCCTCCACAATATGTCTACGATCATATATTTTATAATGCAATTTTCTTAATGAATACTTTGACTAGTGAATAAATTATTCGGATATCATAAGATATATCACAAGGAAAAAAAATCTATGTTCTGTTTGTATCTTAAAAATATATAAGAATAGTTTTCAAGGTCTTCTATTCTTGAATTATGAACAATAATTTCACTGGTACTCGTCAAATAACATAAACCTACACACTGATTTTTATATAAGAAATTATTGAAAAATTCACTATTTCCCAATTCCTCTTGTTTCAATATTCGGTCGTCACGTTACGTTTCATGTGAAAATTACATATATATGCCTGTAGCTCAGTGGAAATAAGTTCGTCTCTAGCAGAGGTACAGAGACAAACTGTTGGAGAGGTTCGTAGTCACCAATCAAAATTTAAAGTAGAGTGTCGTGATGCTGTTGACTTGAGTGGATGGGGTACGTTTTCGTTCTTTTCCCTAAACTAATGCTTATGTGCTGTGTTGGTGGGTGTGGGGTTAAGCATTAAGTACGAAGTGTTGAATAGATGAATAGATGGGTGAAAGTTCTCACATGAGACTAGGCAGTTATTTCTTTTGTGTTGGAGAGTCCCCATGTGTCGACCGAGAGAGGAGAAGATATTCCAAAGTAGATATGAGTGTGTAAAGTTTAAACTGTGTTCTTTGTTGTTCTTCCTTGCATCTAGCAGATGCCAGTGTAAAATGAATAGTCATAAACATTATTTTTTGTTTATGATTCTACAATATAGTTGTAATATTAACCATCCCCTTGTATAACAGGAGACATGGAGGAGCAGCCGTGTTGGGTAATTATGCTTGAGGTATATCTCATCTTTAGCTCTTGTATATCTTCACAAAGTTCACGTACTGTTGAGGTTGTGAACATGAAAGAATACATAGATCAATTTTCCATGTTTGTGTGTATTTTGGGAAATAAATGTTAACTGATATATTTGCCTTTTGGTACCAAAATTAGCACTAGTCAATCTTGCACTTACGCATACGAAGGAGGAGATCGTTCACGAGAAACTGAAACCATGCTTGATTATAAACTTACGGAGAAGAGTTAAAGATTAACCTGTGGAAAATTTGAAATGGTTGACTTCTAATTAAGCACTTGAAAAATTAAACCAAATATATCTAAAATAAGTGGTAAATTATATATACAACTGTCAGCAAATATGTGGTAAATTGAAAATTGTGATATTCCATGTGATTACTTTGAAAATGTTATAGTTTTTAAGTTGAAACAACTGAGAATATATTTCCCAGAACACAAGTCAGATTCTGTGGACTTTGATGAAGAATTTGATGTACGCTTTGAAGATGAATCTGTATGTCCATTTTTCCTTTCTCTACTTTATTCATATTTAATAGTAACTTTAGTGGTTTGCTTCTTCCCTCTTTCCTTTGAGCACCCAAGGCACGGGTCCCTTGGAAAAATTCCAAGGAAACGAGCAGCTCATCACCGTGAAAAAGGTTCTTTCTTTTTTTAATGTTTTAACTAGTTTAACTCATTATGTTTGAACGTAAGTGTATCTTGATTAAAACAGCTAAAGAGACATGATATTTGGTTGATGAGTGAAATTTTTAATGCATTATGTTTAGCAACGAAAGAGATATATGAGACTAGTTTAACACATATGAGACTAGTTTAATGTTTTATGTTTTGACTAGTTTAACTGCTTTTTCGGTTAATTACAAGGCTGGAATGACCCACATTGTCAGGGAGGTTGAGAAGCTCGGATCTAGTACGTGTTCTTTGAATTCACTAATCTATTTGGATGACCTTGTTGTGTGGACACTCTAG

mRNA sequence

ATGGATTACATAATGTTGAATGCACCTACAAGAGTTTACAAGACTATGACTTATACCTCAGTGGAAATAAGTTCGTCTCTAGCAGAGGTACAGAGACAAACTGTTGGAGAGGTTCGTAGTCACCAATCAAAATTTAAAGTAGAGTGTCGTGATGCTGTTGACTTGAGTGGATGGGGAGACATGGAGGAGCAGCCGTGTTGGGTAATTATGCTTGAGGCTGGAATGACCCACATTGTCAGGGAGGTTGAGAAGCTCGGATCTAGTACGTGTTCTTTGAATTCACTAATCTATTTGGATGACCTTGTTGTGTGGACACTCTAG

Coding sequence (CDS)

ATGGATTACATAATGTTGAATGCACCTACAAGAGTTTACAAGACTATGACTTATACCTCAGTGGAAATAAGTTCGTCTCTAGCAGAGGTACAGAGACAAACTGTTGGAGAGGTTCGTAGTCACCAATCAAAATTTAAAGTAGAGTGTCGTGATGCTGTTGACTTGAGTGGATGGGGAGACATGGAGGAGCAGCCGTGTTGGGTAATTATGCTTGAGGCTGGAATGACCCACATTGTCAGGGAGGTTGAGAAGCTCGGATCTAGTACGTGTTCTTTGAATTCACTAATCTATTTGGATGACCTTGTTGTGTGGACACTCTAG

Protein sequence

MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGDMEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL*

Homology

[Close]

BLAST of CsaV3_6G039250 vs. NCBI nr
Match: KAE8647379.1 (hypothetical protein Csa_003923 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 1.9e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD
Sbjct: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60

Query: 61  MEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL 107
           MEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL
Sbjct: 61  MEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL 106

[Close]

BLAST of CsaV3_6G039250 vs. NCBI nr
Match: XP_031742837.1 (uncharacterized protein LOC116404479 isoform X3 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 7.4e-52
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD
Sbjct: 1   MDYIMLNAPTRVYKNMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60

Query: 61  MEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL 107
           MEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL
Sbjct: 61  MEEQPCWVIMLEAGMTHIVREVEKLGSSTCSLNSLIYLDDLVVWTL 106

[Close]

BLAST of CsaV3_6G039250 vs. NCBI nr
Match: XP_031742835.1 (uncharacterized protein LOC116404479 isoform X1 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.7e-43
Identity = 97/119 (81.51%), Postives = 101/119 (84.87%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD
Sbjct: 1   MDYIMLNAPTRVYKNMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60

Query: 61  MEEQPCWVIMLE----------AGMTHIVR---EVEKLGSSTCSLNSLIYLDDLVVWTL 107
           MEEQPCWVIMLE            + + ++   EVEKLGSSTCSLNSLIYLDDLVVWTL
Sbjct: 61  MEEQPCWVIMLENTSQILWTLMKNLMYALKMNLEVEKLGSSTCSLNSLIYLDDLVVWTL 119

[Close]

BLAST of CsaV3_6G039250 vs. NCBI nr
Match: XP_031742838.1 (uncharacterized protein LOC116404479 isoform X4 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.5e-41
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
          MDYIMLNAPTRVYK MTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD
Sbjct: 1  MDYIMLNAPTRVYKNMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60

Query: 61 MEEQPCWVIMLEAGMTHIVREVEKLGSST 90
          MEEQPCWVIMLEAGMTHIVREVEKLGSS+
Sbjct: 61 MEEQPCWVIMLEAGMTHIVREVEKLGSSS 89

[Close]

BLAST of CsaV3_6G039250 vs. NCBI nr
Match: XP_031742836.1 (uncharacterized protein LOC116404479 isoform X2 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 79/102 (77.45%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD
Sbjct: 1   MDYIMLNAPTRVYKNMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60

Query: 61  MEEQPCWVIMLE----------AGMTHIVR---EVEKLGSST 90
           MEEQPCWVIMLE            + + ++   EVEKLGSS+
Sbjct: 61  MEEQPCWVIMLENTSQILWTLMKNLMYALKMNLEVEKLGSSS 102

[Close]

BLAST of CsaV3_6G039250 vs. ExPASy TrEMBL
Match: A0A0A0LZS9 (Protein arginine methyltransferase NDUFAF7 OS=Cucumis sativus OX=3659 GN=Csa_1G615180 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.0e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYKTMTYTSVEIS SLAE+QRQTVG+VRSHQSKFKVECRDAVDLSGWGD
Sbjct: 149 MDYIMLNAPTRVYKTMTYTSVEISPSLAEIQRQTVGDVRSHQSKFKVECRDAVDLSGWGD 208

Query: 61  MEEQPCWVIMLE 73
           MEEQPCWVIMLE
Sbjct: 209 MEEQPCWVIMLE 220

[Close]

BLAST of CsaV3_6G039250 vs. ExPASy TrEMBL
Match: A0A5A7U5U3 (Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00400 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-30
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEIS SLAE+QRQTVGEVRSHQSKFKVECRDAVDL GWGD
Sbjct: 144 MDYIMLNAPTRVYKNMTYTSVEISPSLAEIQRQTVGEVRSHQSKFKVECRDAVDLRGWGD 203

Query: 61  MEEQPCWVIMLE 73
           +EEQPCWVIMLE
Sbjct: 204 VEEQPCWVIMLE 215

[Close]

BLAST of CsaV3_6G039250 vs. ExPASy TrEMBL
Match: A0A5D3D5T7 (Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G001000 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-30
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEIS SLAE+QRQTVGEVRSHQSKFKVECRDAVDL GWGD
Sbjct: 198 MDYIMLNAPTRVYKNMTYTSVEISPSLAEIQRQTVGEVRSHQSKFKVECRDAVDLRGWGD 257

Query: 61  MEEQPCWVIMLE 73
           +EEQPCWVIMLE
Sbjct: 258 VEEQPCWVIMLE 269

[Close]

BLAST of CsaV3_6G039250 vs. ExPASy TrEMBL
Match: A0A1S3BNJ4 (Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo OX=3656 GN=LOC103492021 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-30
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEIS SLAE+QRQTVGEVRSHQSKFKVECRDAVDL GWGD
Sbjct: 177 MDYIMLNAPTRVYKNMTYTSVEISPSLAEIQRQTVGEVRSHQSKFKVECRDAVDLRGWGD 236

Query: 61  MEEQPCWVIMLE 73
           +EEQPCWVIMLE
Sbjct: 237 VEEQPCWVIMLE 248

[Close]

BLAST of CsaV3_6G039250 vs. ExPASy TrEMBL
Match: A0A1S4DY46 (Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo OX=3656 GN=LOC103492021 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.9e-30
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           MDYIMLNAPTRVYK MTYTSVEIS SLAE+QRQTVGEVRSHQSKFKVECRDAVDL GWGD
Sbjct: 176 MDYIMLNAPTRVYKNMTYTSVEISPSLAEIQRQTVGEVRSHQSKFKVECRDAVDLRGWGD 235

Query: 61  MEEQPCWVIMLE 73
           +EEQPCWVIMLE
Sbjct: 236 VEEQPCWVIMLE 247

[Close]

BLAST of CsaV3_6G039250 vs. TAIR 10
Match: AT1G04900.1 (Protein of unknown function (DUF185) )

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-25
Identity = 50/72 (69.44%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1   MDYIMLNAPTRVYKTMTYTSVEISSSLAEVQRQTVGEVRSHQSKFKVECRDAVDLSGWGD 60
           +DYIMLNAP R+YK M+YTS+EIS SLA++Q++TV +V SH SKF+VECRDA DL+GW +
Sbjct: 146 LDYIMLNAPERIYKNMSYTSIEISPSLAKIQKETVAQVGSHLSKFRVECRDASDLAGWKN 205

Query: 61  MEEQPCWVIMLE 73
           +E+QPCWVIMLE
Sbjct: 206 VEQQPCWVIMLE 217

The following BLAST results are available for this feature:

BLAST of CsaV3_6G039250 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647379.1	1.9e-52	100.00	hypothetical protein Csa_003923 [Cucumis sativus]	[more]
XP_031742837.1	7.4e-52	99.06	uncharacterized protein LOC116404479 isoform X3 [Cucumis sativus]	[more]
XP_031742835.1	1.7e-43	81.51	uncharacterized protein LOC116404479 isoform X1 [Cucumis sativus]	[more]
XP_031742838.1	4.5e-41	97.75	uncharacterized protein LOC116404479 isoform X4 [Cucumis sativus]	[more]
XP_031742836.1	1.0e-32	77.45	uncharacterized protein LOC116404479 isoform X2 [Cucumis sativus]	[more]

BLAST of CsaV3_6G039250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G039250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LZS9	2.0e-31	95.83	Protein arginine methyltransferase NDUFAF7 OS=Cucumis sativus OX=3659 GN=Csa_1G6...	[more]
A0A5A7U5U3	3.9e-30	93.06	Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3D5T7	3.9e-30	93.06	Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BNJ4	3.9e-30	93.06	Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo OX=3656 GN=LOC1034920...	[more]
A0A1S4DY46	3.9e-30	93.06	Protein arginine methyltransferase NDUFAF7 OS=Cucumis melo OX=3656 GN=LOC1034920...	[more]

BLAST of CsaV3_6G039250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04900.1	1.3e-25	69.44	Protein of unknown function (DUF185)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12049:SF5	PROTEIN ARGININE METHYLTRANSFERASE NDUFAF7 HOMOLOG, MITOCHONDRIAL	coord: 1..72
IPR003788	Protein arginine methyltransferase NDUFAF7	PANTHER	PTHR12049	UNCHARACTERIZED	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G039250.1	CsaV3_6G039250.1	mRNA