CsaV3_6G039230 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G039230
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 22544706 .. 22545793 (+)
RNA-Seq ExpressionCsaV3_6G039230
SyntenyCsaV3_6G039230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGTTGATTCCCAGAGAAGAAACAGTTGGTCGGCGGCAAGGGGTTTTGTTCGTCGTCGTCAGCTTCTTATTTCTTCTAATATTTCTCTATGCCGCCTTTATTTCCAAGCTTCTTCCACCTTCAAACAACGCCTTCTTATCTGCTATTCAAAACGACTGGTAAAACTTTTCTAATTATCTTTGTTGTGTCTAGTCTAGTCCACAATTAGGTTCTTTGCGTTGTTATTCTGGAAAAAATAGAAGGTTGTATTGAAGTGTTAGTGTTAGTTTCTGTTTTTTTTTACTTGAATTCTGGGTTTGATCTTGATTTGGAGAGGGGAAAGGTATTGTGTACCGAATTAAGATCAAAGCAAATCTGATTAGTTGATCAATGTGAAGGAAGAGAAAGACCAGGGCCGAATAGAACATATCATACTAACTTGTAGGCTGTACATTAACCATTTGGTTTTTTATTTCTAATTTTTTAAAATCATTCTGTTTTCTCACCATTTCTTGTTCATGATTTCACAATTCCTATGTTCGACCTTTGAATTTTTAGCTAATTTTGCAAAAAGAAAAGCAAGTTTTTGTAGGCAACAAAACTTGTAAACCAATATAGTTTCAAAAACAAAGTGGTTGTAAATGGGACCTAGGAATCAGTTTCTCTTAGAGATGCTGTGGTGGTTAATGGAAATAACTCATGACTCAACTGTTTTGATATTCAAACAGCCATAATATATATGGATGACAAAATGCTGCCATCCATACTAGAGAATGAATGAGAATGACTATGTATACATCGGAGTACTAGCTTGCCTTTGAAGCAAACCAAGTTCTTGTTCCACATTTTTATGAAAACTGGTTTAGTATTGGTGCCATTGATCTCTTGAAAAGATCAAGTCTAAGTAAACTAATATGGTAACTTGTTTCTTACACTAGTATTGATCAACAGTGACCTTTATCTGTAATGCGTTTCTTCTTTCTTATTAGGCATTACTGTCTCCTTGTGCCCTTGACATTACCTATCCTTTACGTTGCCGTTTATTTCCATTGGCTGAGTATGAAACTATTCAAGCATGCTTGATCATGCCGTCGAATGAAGATGAAGG

mRNA sequence

ATCGTTGATTCCCAGAGAAGAAACAGTTGGTCGGCGGCAAGGGGTTTTGTTCGTCGTCGTCAGCTTCTTATTTCTTCTAATATTTCTCTATGCCGCCTTTATTTCCAAGCTTCTTCCACCTTCAAACAACGCCTTCTTATCTGCTATTCAAAACGACTGGCATTACTGTCTCCTTGTGCCCTTGACATTACCTATCCTTTACGTTGCCGTTTATTTCCATTGGCTGAGTATGAAACTATTCAAGCATGCTTGATCATGCCGTCGAATGAAGATGAAGG

Coding sequence (CDS)

ATCGTTGATTCCCAGAGAAGAAACAGTTGGTCGGCGGCAAGGGGTTTTGTTCGTCGTCGTCAGCTTCTTATTTCTTCTAATATTTCTCTATGCCGCCTTTATTTCCAAGCTTCTTCCACCTTCAAACAACGCCTTCTTATCTGCTATTCAAAACGACTGGCATTACTGTCTCCTTGTGCCCTTGACATTACCTATCCTTTACGTTGCCGTTTATTTCCATTGGCTGAGTATGAAACTATTCAAGCATGCTTGATCATGCCGTCGAATGAAGATGAAGG

Protein sequence

IVDSQRRNSWSAARGFVRRRQLLISSNISLCRLYFQASSTFKQRLLICYSKRLALLSPCALDITYPLRCRLFPLAEYETIQACLIMPSNEDEX
Homology
BLAST of CsaV3_6G039230 vs. NCBI nr
Match: KAE8647376.1 (hypothetical protein Csa_003498, partial [Cucumis sativus])

HSP 1 Score: 184.9 bits (468), Expect = 3.2e-43
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  IVDSQRRNSWSAARGFVRRRQLLISSNISLCRLYFQASSTFKQRLLICYSKRLALLSPCA 60
          IVDSQRRNSWSAARGFVRRRQLLISSNISLCRLYFQASSTFKQRLLICYSKRLALLSPCA
Sbjct: 1  IVDSQRRNSWSAARGFVRRRQLLISSNISLCRLYFQASSTFKQRLLICYSKRLALLSPCA 60

Query: 61 LDITYPLRCRLFPLAEYETIQACLIMPSNEDE 93
          LDITYPLRCRLFPLAEYETIQACLIMPSNEDE
Sbjct: 61 LDITYPLRCRLFPLAEYETIQACLIMPSNEDE 92

BLAST of CsaV3_6G039230 vs. ExPASy TrEMBL
Match: A0A6N2LCV6 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS173744 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.4e-05
Identity = 31/82 (37.80%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 15  GFVRRRQLLISS-----NISLCRLYFQASSTFKQRLLICYSKRLALLSPCALDITYPLRC 74
           GFV+R  + +        IS+C    +ASS   Q   +C+SKR  LL    LD +YP  C
Sbjct: 34  GFVKRMVVYVDGFRIFCGISICGSDIKASSIIGQPYHLCHSKRQLLLLLGPLDTSYPGHC 93

Query: 75  RLFPLAEYETIQACLIMPSNED 92
           R+F LA++E +Q C+ +PS+ +
Sbjct: 94  RVFSLAQHEDVQTCMRLPSSNE 115

BLAST of CsaV3_6G039230 vs. ExPASy TrEMBL
Match: A0A6N2L4A3 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS173744 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.4e-04
Identity = 28/68 (41.18%), Postives = 41/68 (60.29%), Query Frame = 0

Query: 24 ISSNISLCRLYFQASSTFKQRLLICYSKRLALLSPCALDITYPLRCRLFPLAEYETIQAC 83
          I   IS+C    +ASS   Q   +C+SKR  LL    LD +YP  CR+F LA++E +Q C
Sbjct: 10 IFCGISICGSDIKASSIIGQPYHLCHSKRQLLLLLGPLDTSYPGHCRVFSLAQHEDVQTC 69

Query: 84 LIMPSNED 92
          + +PS+ +
Sbjct: 70 MRLPSSNE 77

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647376.13.2e-43100.00hypothetical protein Csa_003498, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2LCV66.4e-0537.80Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS173744 PE=4 SV=... [more]
A0A6N2L4A32.4e-0441.18Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS173744 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G039230.1CsaV3_6G039230.1mRNA