CsaV3_6G039180 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G039180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 22512855 .. 22514582 (-)
RNA-Seq Expression	CsaV3_6G039180
Synteny	CsaV3_6G039180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTCAATGTGACCCATTTTTCACTTGATAATAACCCCTTCTTTTTTAATACCCTTTTTCTCACACTGAACACACAACACAAAGCCCCAACAGATCACACACTCCCTCCCTTCTCCTTCCCATTCTCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCCCCTTCTCCTTCTCCTTCTCCCTTGCTTGCTTAGGAGGGTGAAGGTGAGAAAAAATATCAAAAGGTGAGTTTGGGTTGTTAACCTCTCAATTTAGTTCACCTTTGTTATTGTCTCATTAATTATATATATACTTATTGTTACTATATCAATCATCATGATATGTTGTGAGTTCTTTTACTATACCATCACGCGTGTTTAAGAAATGTTGGGTTTAGAATTTGGTGAAAGATGGTCGAGTGAGATTTGTTGTATGGATTGAAACTTAAGGCCGAGTGGTTAGACACTAAGTTGATTGTGAAGTTTGGAGTCAATATGTTGAAGTTAAGAAGTTCTATATTTGAGGTGTAGAGTTTGAAAAATAAAATTATTTGATAAATGTACAAACGCTTCCTAAATGATCACAAGAGAGACGTTTGTGTGTTTAAGAAATTAAAGTATTGGGTTTAAAGTGCAAGTTTAAGAAAATAGTTTATTATATGTTTAGAAATTGGTGCCGGATTGAGTGAGGTTTGTTTACGATTGAAACTTATGAGGTGTTTAGGCTCTAGGTTGAAAATTAAGAAGTTTATGTTTGAGATGTAGAGTTGTTAAGGTAAAATTACTCGATAAACGTAAATACAGTGGATAAAGAGAAGATAAAGTTTTTTGATAAATGTGTAAACTTAACACACAATTACCATTAAAATTCAATTGTTTAACACCGATATACATATAAAAAACAATCAAATAAATTAACAAACACTTAATTTTATTAACTCGATCATAATCGACACAATTTTTTAGTTTTCTTTTGTATGATTATTGTAGTAATGAAATCTGACACGTGCGAGGCATGTCATGTGACCCGATCGATAATGGGTCCACTCATAAATCATATTGGGCCGTTTATATTTCAGCCCATAGAAAACATTATGGGCCGAGCCCAATAATACTATTACTCTATTTTTTTCATTGATGTGATTTATAGTATAGTTTTTCATTTGCATATATCTTCACAGGTTTAATTTCATTTCAATATTTTCTATCCTAATTATACATTTTAATACCAATACTGCCTAATTTATTTCAACAATCATGATACCTAAGTAAATAAAGTTAAACATAACAATTTCACTCGTTTTCCACTCAGGGATGGATCCAAGCAATTCAAAAATCGATCCATCAGGTTCGTTTCAATTTTTTTCAAACTTTTAGATTTATCGTTAGTTTAATATAACCGTTTAGTGAACGATTGAAATATTTGTATAATAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAGGAAATGTGTAATTAATGACCAAAGACTTGAATGTCTCTAGCACATGTTATTTTAATTATTAATAAAGATCCAAATT

mRNA sequence

ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG

Coding sequence (CDS)

ATGGATCCAAGCAATTCAAAAATCGATCCATCAGAGTTTGAGGCGGTGCCTTCGGAGTTGAAAACCTTAGAAAGGGAGCTCGAGGAAAAGATGAAGAAGATGGAAGAAATGAAGAAGAAGATTGAGGGTAAGAAGGTTTGTTTAGAAAAGAAGAAGGATGGTGTGAAGTTTTCAAGGAAAGAAATGGAAGTTTTTAAAGGGTTATGTGGAAAATACAAGAGCTTGAGAAAGGAATACAATGAAGCATGGGAGAAAGAGAGAAGAGAATCCTAG

Protein sequence

MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGKYKSLRKEYNEAWEKERRES*

Homology

[Close]

BLAST of CsaV3_6G039180 vs. NCBI nr
Match: KGN48117.1 (hypothetical protein Csa_003321 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 1.4e-38
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 91
          EMEVFKGLCGKYKSLRKEYNEAWEKERRES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

[Close]

BLAST of CsaV3_6G039180 vs. NCBI nr
Match: KAG7035874.1 (hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 51/90 (56.67%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPS+SKIDPSEF+ V  EL+ L++E+E K KK++EMKK+IE  K+ LE+K    K SR+
Sbjct: 1  MDPSSSKIDPSEFKPVGLELEVLQKEVEAKTKKIKEMKKEIEAIKMWLEEK----KASRE 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 91
          EME  K LC ++ SLRKEY E   K+ RES
Sbjct: 61 EMESLKRLCEEFNSLRKEYYETLGKQTRES 86

[Close]

BLAST of CsaV3_6G039180 vs. NCBI nr
Match: XP_022958532.1 (uncharacterized protein LOC111459736 [Cucurbita moschata])

HSP 1 Score: 65.1 bits (157), Expect = 3.6e-07
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 12  EFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGK 71
           EF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+EME  K LC +
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASREEMESLKRLCEE 222

Query: 72  YKSLRKEYNEAWEKERRES 91
           Y SLRKEY E   K+ RES
Sbjct: 223 YNSLRKEYYETLGKQTRES 237

[Close]

BLAST of CsaV3_6G039180 vs. ExPASy TrEMBL
Match: A0A0A0KIA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.6e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60
          MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK
Sbjct: 1  MDPSNSKIDPSEFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRK 60

Query: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 91
          EMEVFKGLCGKYKSLRKEYNEAWEKERRES
Sbjct: 61 EMEVFKGLCGKYKSLRKEYNEAWEKERRES 90

[Close]

BLAST of CsaV3_6G039180 vs. ExPASy TrEMBL
Match: A0A6J1H234 (uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC111459736 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.8e-07
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 12  EFEAVPSELKTLERELEEKMKKMEEMKKKIEGKKVCLEKKKDGVKFSRKEMEVFKGLCGK 71
           EF+   SEL+ L++E+E K KK++EMKK+IEG K+ LE+K    K SR+EME  K LC +
Sbjct: 163 EFKPAGSELEVLQKEVEAKTKKIKEMKKEIEGIKMWLEEK----KASREEMESLKRLCEE 222

Query: 72  YKSLRKEYNEAWEKERRES 91
           Y SLRKEY E   K+ RES
Sbjct: 223 YNSLRKEYYETLGKQTRES 237

The following BLAST results are available for this feature:

BLAST of CsaV3_6G039180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48117.1	1.4e-38	100.00	hypothetical protein Csa_003321 [Cucumis sativus]	[more]
KAG7035874.1	1.4e-11	56.67	hypothetical protein SDJN02_02673, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022958532.1	3.6e-07	54.43	uncharacterized protein LOC111459736 [Cucurbita moschata]	[more]

BLAST of CsaV3_6G039180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G039180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIA6	6.6e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434370 PE=4 SV=1	[more]
A0A6J1H234	1.8e-07	54.43	uncharacterized protein LOC111459736 OS=Cucurbita moschata OX=3662 GN=LOC1114597...	[more]

BLAST of CsaV3_6G039180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 20..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G039180.1	CsaV3_6G039180.1	mRNA