CsaV3_6G038900 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G038900
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	AvrRpt-cleavage domain-containing protein
Location	chr6: 22304880 .. 22306865 (-)
RNA-Seq Expression	CsaV3_6G038900
Synteny	CsaV3_6G038900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATATTTGAAGTTGTTTGTATTAAGAACAAACATATATATGGTTTTTAATTAGAAGGATGATTTCTCACCTTCGTTTTCCCTTTCTGTTGGAGGTCTCCCACCACCTCCACCTCTCCTCTTTGAGTCCCCATGGCTGCTCGGAAGGAGGTAATTTAATTCTTCTTTTTCCCTCTTCATTCATTTATTTTATTATCATGTAATGATTATCCCATGAGTTTATTTAAATTTTAAATGTTTGAATTCTGGAGTCCAATCTGGGTTCCTTTTTTTCTTTTTATTTCTTATCAAATCTCATTTATGTTAAATAGTATATTTGTAGTAATGTTGTATTGTTATTAAGAAAAAAGAAGCATTTAGAGGATGGTGGTGCTTTAGTTGGTTAATTAAATATGGTGGTTTGGCTTGAAACTATGGGTGTCTTTTTTGTATCCAATAGTTCAAAATTTTAATTACAAGATCTTGAATCTTCTAACATTTTGAGCTAAAAAATTAGAAAGAATTCACTTTGAACGTCCAAAACGATTGCATTTATGAAGGATAATGATTAGGTGCATCTTCGTGCTCCCGATTCTTTACAAGAATAAAGAATAATGTTTTTAGTACTAGTCCAAGTTTTTTTTCCTTTTCTGAAATAGAAATAGGAAAAGTTTTCAGGAAAATTTTTGAATTTCTTATCCTAATTCAAGAGAATCATTGTATTTGATTCTCTTGCATCTGGAACAACTGCTGGCAAAAACAACCATAATGAATAAATAAGAAAGCAATCAAAATCATAAAAATTGGTGATGTGAGGAAGAAAAATATGATGAATCTATTTGAATATGCAACTAAAAGTTTGGTTGGTATATTTGTGTGTTTATGAAGAACAATAGGTGGAGGTCAGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCAGGAGCAAGCAATTATTCTGTTGTATTTACTCAAGCTCGAGCCGATAGAAAACAACAAAAAACTGATTTAACCGAGTTCAAAAAAACCAGCCTAGGGAATGAAAAGGAGTTAATGGAAGCTGTGGATAAACATCATCGCCACCAAAAACATCGCCATCATCGTCATCGCCATCGCCATCACCACCACCACCACCATGACCATGACCATGACCATGAACACCAACACCATCACCACCAACATCATCATCAATCACCACCAGGAGATGACTCTGTTGGCCCGGTAAGTACTTTCACCCATTCTTTTCTAAGTACAAAATATTGAGAAAATGAGGATTTGAGCCTCCGACCTTTAGAGAACAAGTACTTTTTTCATGTCAATTATTATAATGAGTTATGTTTATTTTTTGCCAGCATAAGTTGTACTTCAAATAGATTTTTTTTTTTTTGGGATAACCCTCCCGACAAGCAACAATTGGATGTCAAGAAAAAAAAACTTATAGAATATTAAACCCCATGCAAGTTTAACCACATATTAAATCCATTATCTCTAAGCTCTTTATCAAACCCATGGTCCTCCTCAAAAGCCTAATCAAAACTTTAAACTTAATGAAGAAAACCTAAGTTGAACAAGAATTCAATGTAATATTTGATTACAGAAGCTGAAAAAAATTTGTATAGAAGAAAGTACCTGTTGGATACTAAGGCTGAGGAACAGATTCTGTATCTATTCCTCAATGGGTGATTATTTTTATGCTATTCATGATGGTGGCAACTTCATTTATAGCCTTCTGTGAAGTTGCACTTCCAGTAATTAGAGATTTTCCCGAAGTTTAACCACAGCTGTAACTTTAAAGTAATGCGCGATAATCTTAAAATAACAAGACTACAGTTCTTATCTTACTAAGTTAGTATCTTGTTCTAGCATATAATGGACATAAGCATATTTGTAATAGCATGTACAATAAAAGGCTTTGTAACGATCATTTCAAGATGGATTCTATACTGAGCTAAAAATTTATAGTAAAATAGACAGCAAAAAATCTTATACAGTACAGTATAAGAAACGT

mRNA sequence

ATGGCTGCTCGGAAGGAGAACAATAGGTGGAGGTCAGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCAGGAGCAAGCAATTATTCTGTTGTATTTACTCAAGCTCGAGCCGATAGAAAACAACAAAAAACTGATTTAACCGAGTTCAAAAAAACCAGCCTAGGGAATGAAAAGGAGTTAATGGAAGCTGTGGATAAACATCATCGCCACCAAAAACATCGCCATCATCGTCATCGCCATCGCCATCACCACCACCACCACCATGACCATGACCATGACCATGAACACCAACACCATCACCACCAACATCATCATCAATCACCACCAGGAGATGACTCTGTTGGCCCGGTAAGTACTTTCACCCATTCTTTTCTAAGTACAAAATATTGA

Coding sequence (CDS)

ATGGCTGCTCGGAAGGAGAACAATAGGTGGAGGTCAGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCAGGAGCAAGCAATTATTCTGTTGTATTTACTCAAGCTCGAGCCGATAGAAAACAACAAAAAACTGATTTAACCGAGTTCAAAAAAACCAGCCTAGGGAATGAAAAGGAGTTAATGGAAGCTGTGGATAAACATCATCGCCACCAAAAACATCGCCATCATCGTCATCGCCATCGCCATCACCACCACCACCACCATGACCATGACCATGACCATGAACACCAACACCATCACCACCAACATCATCATCAATCACCACCAGGAGATGACTCTGTTGGCCCGGTAAGTACTTTCACCCATTCTTTTCTAAGTACAAAATATTGA

Protein sequence

MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPVSTFTHSFLSTKY*

Homology

[Close]

BLAST of CsaV3_6G038900 vs. NCBI nr
Match: KAE8647369.1 (hypothetical protein Csa_004264 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 3.7e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60
           MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE
Sbjct: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60

Query: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPVST 120
           LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPVST
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPVST 120

Query: 121 FTHSFLSTKY 131
           FTHSFLSTKY
Sbjct: 121 FTHSFLSTKY 130

[Close]

BLAST of CsaV3_6G038900 vs. NCBI nr
Match: XP_038901151.1 (lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 3.8e-34
Identity = 89/117 (76.07%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60
           MAAR E NRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQ+KTDLTEFK+TSLGNE+E
Sbjct: 1   MAARTEKNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERE 60

Query: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGP 118
           LM A  K HRHQKH HHR      HHHHH+  H H+HQH HH HH   PP DDSV P
Sbjct: 61  LMAATGKCHRHQKHHHHR------HHHHHEQQHQHQHQHRHHHHHRHQPPADDSVVP 111

[Close]

BLAST of CsaV3_6G038900 vs. NCBI nr
Match: XP_038901152.1 (lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 155.2 bits (391), Expect = 3.8e-34
Identity = 89/117 (76.07%), Postives = 94/117 (80.34%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60
           MAAR E NRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQ+KTDLTEFK+TSLGNE+E
Sbjct: 1   MAARTEKNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQRKTDLTEFKRTSLGNERE 60

Query: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGP 118
           LM A  K HRHQKH HHR      HHHHH+  H H+HQH HH HH   PP DDSV P
Sbjct: 61  LMAATGKCHRHQKHHHHR------HHHHHEQQHQHQHQHRHHHHHRHQPPADDSVVP 111

[Close]

BLAST of CsaV3_6G038900 vs. NCBI nr
Match: XP_022152996.1 (lateral signaling target protein 2 homolog [Momordica charantia])

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-23
Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60
           M ARKEN  WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQQKTDLTEFK++SLGNE+E
Sbjct: 1   MDARKENG-WRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERE 60

Query: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPVST 120
           LM A            H+ +HRH H H H+H + H  +HHHHQHHHQ+   DDS+  VST
Sbjct: 61  LMAAAG----------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQA-AADDSIA-VST 107

Query: 121 F 122
           F
Sbjct: 121 F 107

[Close]

BLAST of CsaV3_6G038900 vs. NCBI nr
Match: XP_023512838.1 (dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-20
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 5  KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64
          +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM  
Sbjct: 4  RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65 VDKHHRHQKHRH-HRHRHRHHHHHHHDH 92
           DKH RH +HRH H HRH+HHH  HH H
Sbjct: 64 ADKHDRHHQHRHRHEHRHQHHHQRHHPH 91

[Close]

BLAST of CsaV3_6G038900 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.3e-53
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60
           MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE
Sbjct: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60

Query: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGP 118
           LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGP
Sbjct: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGP 117

[Close]

BLAST of CsaV3_6G038900 vs. ExPASy TrEMBL
Match: A0A6J1DJD7 (lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC111020600 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 8.6e-24
Identity = 81/121 (66.94%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 1   MAARKENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKE 60
           M ARKEN  WRSVPEFGGWDHNAPGASNYSVVFTQARA+RKQQKTDLTEFK++SLGNE+E
Sbjct: 1   MDARKENG-WRSVPEFGGWDHNAPGASNYSVVFTQARANRKQQKTDLTEFKRSSLGNERE 60

Query: 61  LMEAVDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVGPVST 120
           LM A            H+ +HRH H H H+H + H  +HHHHQHHHQ+   DDS+  VST
Sbjct: 61  LMAAAG----------HQQKHRHQHRHRHEHQNQH-RRHHHHQHHHQA-AADDSIA-VST 107

Query: 121 F 122
           F
Sbjct: 121 F 107

[Close]

BLAST of CsaV3_6G038900 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVG 117
            DKH RH +H HHR  HRH HHH           H HH HH Q P     VG
Sbjct: 64  ADKHDRHHQH-HHRREHRHQHHH-----------HRHHPHHGQLPADGAVVG 103

[Close]

BLAST of CsaV3_6G038900 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-20
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVG 117
            DKH RH +H HHR  HRH HHH           H HH HH Q P     VG
Sbjct: 64  ADKHDRHHQH-HHRREHRHQHHH-----------HRHHPHHGQLPADGAVVG 103

[Close]

BLAST of CsaV3_6G038900 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 69/112 (61.61%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 5   KENNRWRSVPEFGGWDHNAPGASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEKELMEA 64
           +  NRW+SVPEFGGWD+N P ASNYSVVF++ARA++KQQKTDLTEFK+ SLGNEKELM  
Sbjct: 4   RTENRWKSVPEFGGWDNNTPDASNYSVVFSRARANKKQQKTDLTEFKRASLGNEKELMAI 63

Query: 65  VDKHHRHQKHRHHRHRHRHHHHHHHDHDHDHEHQHHHHQHHHQSPPGDDSVG 117
            DKH RH +HR HRH HR  HHH             HH HH Q P G   VG
Sbjct: 64  ADKHDRHHQHR-HRHEHRQQHHH-----------QRHHPHHGQLPVGGAVVG 103

[Close]

BLAST of CsaV3_6G038900 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-12
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 0


Query: 1  MAARKENNRWRSVPEFGGWDHNAPG-ASNYSVVFTQARADRKQQKTDLTEFKKTSLGNEK 60
          M  R+EN  W  VP+FGGWD   P  A+NYSVVF++ARA+RKQ K  +   + +SLG+E+
Sbjct: 1  MDKRRENAAWTPVPQFGGWDQKGPNDATNYSVVFSKARANRKQNKAGV---RHSSLGSEQ 60

Query: 61 ELMEAVDKHHRHQKHRH 77
          ELM +V ++H+   HRH
Sbjct: 61 ELMVSVRRNHQQLHHRH 74

The following BLAST results are available for this feature:

BLAST of CsaV3_6G038900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647369.1	3.7e-61	100.00	hypothetical protein Csa_004264 [Cucumis sativus]	[more]
XP_038901151.1	3.8e-34	76.07	lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]	[more]
XP_038901152.1	3.8e-34	76.07	lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]	[more]
XP_022152996.1	1.8e-23	66.94	lateral signaling target protein 2 homolog [Momordica charantia]	[more]
XP_023512838.1	1.1e-20	71.59	dendritic arbor reduction protein 1 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G038900 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G038900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KK09	2.3e-53	100.00	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G43...	[more]
A0A6J1DJD7	8.6e-24	66.94	lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1JCC4	2.0e-20	61.61	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1JEB9	2.0e-20	61.61	dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1FX29	3.4e-20	61.61	dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of CsaV3_6G038900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19473.1	2.0e-12	50.65	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 9..41 e-value: 1.4E-8 score: 33.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..120
None	No IPR available	PANTHER	PTHR33882	PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN	coord: 1..86
None	No IPR available	PANTHER	PTHR33882:SF11	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 1..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G038900.1	CsaV3_6G038900.1	mRNA